Rh7CG337400

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002983
Physical Location & Seq
Forward (+)
37674108 .. 37678135
4028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG337400.1

Sequence Viewer

Length: 840 bp
ATGATGAGTTTGAATCAGAATTTTGTGCCTGCTGACATTAGTTCTATAGGGTATCGAGTATTTCTAGGACACAAACAATACTTCTTTTCTTCAGACGTAGGTGCAGGAAAGATGCAATGGTATGCATTTCACAAGGAACCAGCTAGTGGTGCTGATGCCCACAATGGTAAAAAGGAAAGGACCCCAACTTTATCCTGGGGAAAGGGTAATGTGATCTTGCTTGGAGATTCTGTCCATGGTATGCAGCCAAATTTGGGTCAAGAGGGATGCATGGCCATTGAGGATGGTTATCAACTTGCATTGGAGCTCGAAAAAGCTTTGAAGAAAAGCAGTGAAATGGGAACTCCTCCTGACATTGCTGCTTCTTTAAGAAGCTATGAGACATCTAGAAAGCTGCGGGCTTATCTGGGTGTAGGACTTGGTCCATTATTGTTTTTGACGAAGTCTAGGATACCACATCCAGGAAGAGTTGGTGGGAGAGTTTTTGTTGACAAGGCAATGCCCTTGATGCTGAGTTGGGTCTTAGGTGGTAACAGATTTGGTCTAAGCTTCAAAAAGTACAACTACTTGAAATTTGAGCAATCTTCTGGAGATCCTGCCCGTGTTCAAGTGTTGTATGATCGGGCTATTGCTGAGTTTCCTATAGCCAGTCATCTGTGGCTTGATTATACTTCCTATTTGGACAAAACTTTGAAGGTTGGCAGAATTATAAGCAACGTTTATTCTAGGGCCGTAAAGAATTGCCCCTGGGTTGGAGAACTTTGGTTCAGATATTTGCTTTCCTTGGAGCGTGGCCATGCTTCTGAGAAAGAGATTGCAGCTGTATGTTTCAAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
FAD_binding_3 FHA NAD_binding_8

Protein Analysis

279

Amino Acids

31.15

Weight (kDa)

9.36

Isoelectric Point (pI)

29.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAT_PRP39_C PF23241 188 - 246 3.2e-09 PRP39 C-terminal HAT repeat
HAT_PRP39_N PF23240 193 - 263 8.5e-06 PRP39 N-terminal HAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 710
AccB7I CCANNNNNTGG 1 cut(s) 146
AciI CCGC 1 cut(s) 397
AclI AACGTT 1 cut(s) 717
AclWI GGATC 1 cut(s) 587
AcoI YGGCCR 2 cut(s) 273, 793
AcsI RAATTY 3 cut(s) 19, 250, 572
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 560
AfiI CCNNNNNNNGG 4 cut(s) 146, 254, 461, 752
AgsI TTSAA 7 cut(s) 13, 322, 553, 571, 608, 694, 832
AjnI CCWGG 3 cut(s) 194, 460, 746
AluBI AGCT 7 cut(s) 143, 307, 317, 375, 394, 549, 821
AluI AGCT 7 cut(s) 143, 307, 317, 375, 394, 549, 821
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 1 cut(s) 587
AoxI GGCC 3 cut(s) 273, 729, 793
ApeKI GCWGC 4 cut(s) 244, 359, 394, 818
ApoI RAATTY 3 cut(s) 19, 250, 572
AspS9I GGNCC 3 cut(s) 180, 422, 729
AvaII GGWCC 2 cut(s) 180, 422
BalI TGGCCA 2 cut(s) 275, 795
BanII GRGCYC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 4 cut(s) 256, 346, 381, 830
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 716
BciT130I CCWGG 3 cut(s) 196, 462, 748
BciVI GTATCC 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 5 cut(s) 65, 144, 387, 447, 726
BfmI CTRYAG 2 cut(s) 45, 642
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 4 cut(s) 245, 360, 395, 819
BlsI GCNGC 4 cut(s) 246, 361, 396, 820
Bme1390I CCNGG 3 cut(s) 196, 462, 748
Bme18I GGWCC 2 cut(s) 180, 422
BmgT120I GGNCC 3 cut(s) 180, 422, 729
BmiI GGNNCC 2 cut(s) 138, 182
BmrFI CCNGG 3 cut(s) 196, 462, 748
BmsI GCATC 4 cut(s) 102, 145, 257, 498
BpmI CTGGAG 1 cut(s) 609
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 5 cut(s) 195, 235, 746, 747, 783
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 254, 461, 752
Bse1I ACTGG 1 cut(s) 648
Bse3DI GCAATG 3 cut(s) 122, 354, 504
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 3 cut(s) 196, 462, 748
BseDI CCNNGG 5 cut(s) 195, 235, 746, 747, 783
BseGI GGATG 3 cut(s) 272, 289, 457
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 4 cut(s) 146, 254, 461, 752
BseMI GCAATG 3 cut(s) 122, 354, 504
BseMII CTCAG 3 cut(s) 503, 624, 795
BseNI ACTGG 1 cut(s) 648
BseRI GAGGAG 1 cut(s) 336
BseXI GCAGC 4 cut(s) 256, 346, 381, 830
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 3 cut(s) 275, 731, 795
BsiHKAI GWGCWC 1 cut(s) 309
BslI CCNNNNNNNGG 4 cut(s) 146, 254, 461, 752
BsmAI GTCTC 1 cut(s) 374
BsnI GGCC 3 cut(s) 275, 731, 795
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 3 cut(s) 213, 592, 619
Bsp19I CCATGG 1 cut(s) 235
BspACI CCGC 1 cut(s) 397
BspANI GGCC 3 cut(s) 275, 731, 795
BspCNI CTCAG 3 cut(s) 504, 625, 796
BspLI GGNNCC 2 cut(s) 138, 182
BspPI GGATC 1 cut(s) 587
BsrDI GCAATG 3 cut(s) 122, 354, 504
BsrI ACTGG 1 cut(s) 648
BssECI CCNNGG 5 cut(s) 195, 235, 746, 747, 783
BssMI GATC 3 cut(s) 213, 592, 619
BssT1I CCWWGG 2 cut(s) 235, 783
Bst2UI CCWGG 3 cut(s) 196, 462, 748
Bst6I CTCTTC 1 cut(s) 460
BstC8I GCNNGC 2 cut(s) 30, 399
BstDEI CTNAG 5 cut(s) 512, 523, 545, 633, 804
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 3 cut(s) 272, 289, 457
BstKTI GATC 3 cut(s) 216, 595, 622
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 3 cut(s) 213, 592, 619
BstMWI GCNNNNNNNGC 2 cut(s) 149, 508
BstNI CCWGG 3 cut(s) 196, 462, 748
BstSCI CCNGG 3 cut(s) 194, 460, 746
BstSFI CTRYAG 2 cut(s) 45, 642
BstV1I GCAGC 4 cut(s) 256, 346, 381, 830
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 3 cut(s) 275, 731, 795
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 3 cut(s) 272, 289, 457
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 2 cut(s) 30, 399
Cfr13I GGNCC 3 cut(s) 180, 422, 729
Csp6I GTAC 1 cut(s) 559
CviAII CATG 3 cut(s) 236, 271, 797
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 5 cut(s) 512, 523, 545, 633, 804
DpnI GATC 3 cut(s) 215, 594, 621
DpnII GATC 3 cut(s) 213, 592, 619
EaeI YGGCCR 2 cut(s) 273, 793
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 2 cut(s) 235, 783
Eco24I GRGCYC 1 cut(s) 309
Eco47I GGWCC 2 cut(s) 180, 422
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 180
EcoRII CCWGG 3 cut(s) 194, 460, 746
EcoT14I CCWWGG 2 cut(s) 235, 783
EcoT22I ATGCAT 2 cut(s) 127, 272
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 2 cut(s) 235, 783
FaeI CATG 3 cut(s) 239, 274, 800
FatI CATG 3 cut(s) 235, 270, 796
FauI CCCGC 1 cut(s) 390
Fnu4HI GCNGC 4 cut(s) 245, 360, 395, 819
FokI GGATG 3 cut(s) 279, 296, 444
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 4 cut(s) 245, 360, 395, 819
FspBI CTAG 5 cut(s) 65, 144, 387, 447, 726
GluI GCNGC 4 cut(s) 245, 360, 395, 819
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 3 cut(s) 275, 731, 795
Hin1II CATG 3 cut(s) 239, 274, 800
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 2 cut(s) 315, 547
HinfI GANTC 2 cut(s) 13, 227
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 4 cut(s) 18, 94, 770, 805
Hpy188III TCNNGA 4 cut(s) 260, 350, 387, 588
Hpy8I GTNNAC 1 cut(s) 490
HpyAV CCTTC 1 cut(s) 688
HpyCH4IV ACGT 2 cut(s) 96, 717
HpyCH4V TGCA 7 cut(s) 104, 115, 125, 244, 270, 299, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 508
HpyF3I CTNAG 5 cut(s) 512, 523, 545, 633, 804
HpySE526I ACGT 2 cut(s) 96, 717
Hsp92II CATG 3 cut(s) 239, 274, 800
Kzo9I GATC 3 cut(s) 213, 592, 619
LmnI GCTCC 2 cut(s) 304, 787
Lsp1109I GCAGC 4 cut(s) 256, 346, 381, 830
LweI GCATC 4 cut(s) 102, 145, 257, 498
MaeI CTAG 5 cut(s) 65, 144, 387, 447, 726
MaeII ACGT 2 cut(s) 96, 717
MaeIII GTNAC 1 cut(s) 530
MalI GATC 3 cut(s) 215, 594, 621
MboI GATC 3 cut(s) 213, 592, 619
MboII GAAGA 4 cut(s) 81, 334, 477, 576
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 1 cut(s) 309
MlsI TGGCCA 2 cut(s) 275, 795
MluCI AATT 5 cut(s) 19, 250, 572, 705, 739
MluNI TGGCCA 2 cut(s) 275, 795
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 3 cut(s) 256, 274, 357
Mox20I TGGCCA 2 cut(s) 275, 795
Mph1103I ATGCAT 2 cut(s) 127, 272
MscI TGGCCA 2 cut(s) 275, 795
MseI TTAA 2 cut(s) 368, 838
Msp20I TGGCCA 2 cut(s) 275, 795
MspA1I CMGCKG 1 cut(s) 821
MspR9I CCNGG 3 cut(s) 196, 462, 748
MvaI CCWGG 3 cut(s) 196, 462, 748
MwoI GCNNNNNNNGC 2 cut(s) 149, 508
NcoI CCATGG 1 cut(s) 235
NdeII GATC 3 cut(s) 213, 592, 619
NlaIII CATG 3 cut(s) 239, 274, 800
NlaIV GGNNCC 2 cut(s) 138, 182
NsiI ATGCAT 2 cut(s) 127, 272
PasI CCCWGGG 1 cut(s) 747
PfeI GAWTC 2 cut(s) 13, 227
PflFI GACNNNGTC 2 cut(s) 420, 442
PflMI CCANNNNNTGG 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 460
PkrI GCNGC 4 cut(s) 246, 361, 396, 820
PpuMI RGGWCCY 1 cut(s) 180
PsiI TTATAA 1 cut(s) 710
Psp124BI GAGCTC 1 cut(s) 309
Psp1406I AACGTT 1 cut(s) 717
Psp5II RGGWCCY 1 cut(s) 180
Psp6I CCWGG 3 cut(s) 194, 460, 746
PspGI CCWGG 3 cut(s) 194, 460, 746
PspN4I GGNNCC 2 cut(s) 138, 182
PspPI GGNCC 3 cut(s) 180, 422, 729
PspPPI RGGWCCY 1 cut(s) 180
PsuI RGATCY 1 cut(s) 592
PsyI GACNNNGTC 2 cut(s) 420, 442
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 368, 838
SatI GCNGC 4 cut(s) 245, 360, 395, 819
Sau3AI GATC 3 cut(s) 213, 592, 619
Sau96I GGNCC 3 cut(s) 180, 422, 729
ScrFI CCNGG 3 cut(s) 196, 462, 748
SduI GDGCHC 1 cut(s) 309
SfaNI GCATC 4 cut(s) 102, 145, 257, 498
SfcI CTRYAG 2 cut(s) 45, 642
SinI GGWCC 2 cut(s) 180, 422
Sse9I AATT 5 cut(s) 19, 250, 572, 705, 739
SsiI CCGC 1 cut(s) 397
SspMI CTAG 5 cut(s) 65, 144, 387, 447, 726
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 3 cut(s) 194, 460, 746
StyI CCWWGG 2 cut(s) 235, 783
TaiI ACGT 2 cut(s) 99, 720
TaqI TCGA 2 cut(s) 55, 309
TasI AATT 5 cut(s) 19, 250, 572, 705, 739
TatI WGTACW 1 cut(s) 558
TfiI GAWTC 2 cut(s) 13, 227
Tru1I TTAA 2 cut(s) 368, 838
Tru9I TTAA 2 cut(s) 368, 838
TscAI CASTG 1 cut(s) 337
TseI GCWGC 4 cut(s) 244, 359, 394, 818
TspRI CASTG 1 cut(s) 337
Tth111I GACNNNGTC 2 cut(s) 420, 442
Van91I CCANNNNNTGG 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 180, 422
XapI RAATTY 3 cut(s) 19, 250, 572
XbaI TCTAGA 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
XspI CTAG 5 cut(s) 65, 144, 387, 447, 726
Zsp2I ATGCAT 2 cut(s) 127, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.