Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002983

Physical Location & Seq

Genomic Coordinates Forward (+)

36267346 .. 36269272

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG320600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTGTCTTTGCTGCCACTGAATCGGATGATGAGTTTGAATCAGAATTTTGTGCCTGCTGACATTAGTTCTATAGGGTATCGAGTATTTCTAGGACACAAACAATACTTCTTTTCTTCAGACGTAGGTGCAGGAAAGATGCAATGGTATGCATTTCACAAGGAACCAGCTAGTGGTGCTGATGCCCACAATGGTAAAAAGGAAAGGACCCCAACTTTATCCTGGGGAAAGGGTAATGTGATCTTGCTTGGAGATTCTGTCCATGGTATGCAGCCAAATTTGGGTCAAGAGGGATGCATGGCCATTGAGGATGGTTATCAACTTGCATTGGAGCTCGAAAAAGCTTTGAAGAAAAGCAGTGAAATGGGAACTCCTCCTGACATTGCTGCTTCTTTAAGAAGCTATGAGACATCTAGAAAGCTGCGGGTTGCCATTATTCATGGAATGGCTAGAATGTCTGCAATTATGGCTTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FAD_binding_3 FHA NAD_binding_8

Protein Analysis

159

Amino Acids

17.41

Weight (kDa)

9.04

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67030 AT5G67030
fragaria_vesca	FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080
malus_domestica	MD02G1172400.v1.1 MD15G1284500.v1.1
prunus_persica	Prupe.7G133100_v2.0.a1 Prupe.7G133100_v2.0.a1
pyrus_communis	pycom02g13890 pycom15g24720
rosa_chinensis	RchiOBHm_Chr2g0105701 RchiOBHm_Chr2g0138261 RchiOBHm_Chr5g0062971 RchiOBHm_Chr5g0062981
rosa_laevigata	RLG00000006425 RLG00000017450
rosa_multiflora	Rmu_sc0001051.1_g000057
rosa_roxburghii	Rroxscaffold_2G00137970 Rroxscaffold_2G00137980
rosa_rugosa	Rorug02G0129300 Rorug02G0129400 Rorug02G0129500 Rorug02G0129600
rosa_samantha	Rh2AG181000 Rh2BG190100 Rh2CG185200 Rh2DG187000 Rh4DG142500 Rh7AG320600 Rh7AG325500 Rh7BG187500 Rh7CG337400 Rh7CG342700
rosa_wichuraiana	Rw2G014150 Rw2G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	173
AciI	CCGC	1 cut(s)	424
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	46, 277
AcuI	CTGAAG	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	173, 281
AgsI	TTSAA	3 cut(s)	40, 349, 474
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	5 cut(s)	170, 334, 344, 402, 421
AluI	AGCT	5 cut(s)	170, 334, 344, 402, 421
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	401
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	4 cut(s)	13, 271, 386, 421
ApoI	RAATTY	2 cut(s)	46, 277
AspS9I	GGNCC	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	3 cut(s)	283, 373, 408
BccI	CCATC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	4 cut(s)	92, 171, 414, 450
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	4 cut(s)	14, 272, 387, 422
BlsI	GCNGC	4 cut(s)	15, 273, 388, 423
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	2 cut(s)	165, 209
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	3 cut(s)	129, 172, 284
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	222, 262
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 281
Bse3DI	GCAATG	2 cut(s)	149, 381
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	2 cut(s)	222, 262
BseGI	GGATG	3 cut(s)	33, 299, 316
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	173, 281
BseMI	GCAATG	2 cut(s)	149, 381
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	3 cut(s)	283, 373, 408
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	336
BslI	CCNNNNNNNGG	2 cut(s)	173, 281
BsmAI	GTCTC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	240
Bsp19I	CCATGG	1 cut(s)	262
BspACI	CCGC	1 cut(s)	424
BspANI	GGCC	1 cut(s)	302
BspLI	GGNNCC	2 cut(s)	165, 209
BsrDI	GCAATG	2 cut(s)	149, 381
BssECI	CCNNGG	2 cut(s)	222, 262
BssMI	GATC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	3 cut(s)	33, 299, 316
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 467
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	283, 373, 408
BsuRI	GGCC	1 cut(s)	302
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	33, 299, 316
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	17, 364
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	207
CviAII	CATG	3 cut(s)	263, 298, 440
CviJI	RGCY	9 cut(s)	170, 274, 302, 334, 344, 402, 421, 449, 470
CviKI_1	RGCY	9 cut(s)	170, 274, 302, 334, 344, 402, 421, 449, 470
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
EaeI	YGGCCR	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	102
EcoICRI	GAGCTC	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	262
EcoT22I	ATGCAT	2 cut(s)	154, 299
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	3 cut(s)	266, 301, 443
FaiI	YATR	8 cut(s)	74, 150, 264, 269, 299, 405, 441, 467
FatI	CATG	3 cut(s)	262, 297, 439
FauI	CCCGC	1 cut(s)	417
Fnu4HI	GCNGC	4 cut(s)	14, 272, 387, 422
FokI	GGATG	3 cut(s)	40, 306, 323
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	4 cut(s)	14, 272, 387, 422
FspBI	CTAG	4 cut(s)	92, 171, 414, 450
GluI	GCNGC	4 cut(s)	14, 272, 387, 422
HaeIII	GGCC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	266, 301, 443
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	3 cut(s)	22, 40, 254
Hpy188I	TCNGA	3 cut(s)	27, 45, 121
Hpy188III	TCNNGA	3 cut(s)	287, 377, 414
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	7 cut(s)	131, 142, 152, 271, 297, 326, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 467
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	266, 301, 443
Kzo9I	GATC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	6 cut(s)	69, 117, 180, 208, 235, 390
Lsp1109I	GCAGC	3 cut(s)	283, 373, 408
LweI	GCATC	3 cut(s)	129, 172, 284
MaeI	CTAG	4 cut(s)	92, 171, 414, 450
MaeII	ACGT	1 cut(s)	123
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	2 cut(s)	108, 361
MhlI	GDGCHC	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	3 cut(s)	46, 277, 462
MluNI	TGGCCA	1 cut(s)	302
MnlI	CCTC	3 cut(s)	283, 301, 384
Mox20I	TGGCCA	1 cut(s)	302
Mph1103I	ATGCAT	2 cut(s)	154, 299
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	2 cut(s)	395, 478
Msp20I	TGGCCA	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	176, 467
NcoI	CCATGG	1 cut(s)	262
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	3 cut(s)	266, 301, 443
NlaIV	GGNNCC	2 cut(s)	165, 209
NsiI	ATGCAT	2 cut(s)	154, 299
PfeI	GAWTC	3 cut(s)	22, 40, 254
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	15, 273, 388, 423
PpuMI	RGGWCCY	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	165, 209
PspPI	GGNCC	1 cut(s)	207
PspPPI	RGGWCCY	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	395, 478
SatI	GCNGC	4 cut(s)	14, 272, 387, 422
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	7 cut(s)	126, 130, 172, 336, 346, 404, 423
SfaNI	GCATC	3 cut(s)	129, 172, 284
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	207
Sse9I	AATT	3 cut(s)	46, 277, 462
SsiI	CCGC	1 cut(s)	424
SspMI	CTAG	4 cut(s)	92, 171, 414, 450
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	262
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	82, 336
TasI	AATT	3 cut(s)	46, 277, 462
TfiI	GAWTC	3 cut(s)	22, 40, 254
Tru1I	TTAA	2 cut(s)	395, 478
Tru9I	TTAA	2 cut(s)	395, 478
TscAI	CASTG	2 cut(s)	24, 364
TseI	GCWGC	4 cut(s)	13, 271, 386, 421
TspDTI	ATGAA	1 cut(s)	428
TspRI	CASTG	2 cut(s)	24, 364
Van91I	CCANNNNNTGG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	2 cut(s)	46, 277
XbaI	TCTAGA	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	219
XspI	CTAG	4 cut(s)	92, 171, 414, 450
Zsp2I	ATGCAT	2 cut(s)	154, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.