Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002983

Physical Location & Seq

Genomic Coordinates Forward (+)

75985841 .. 75986953

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGCAATGGTATGCATTTCACAAGGAACCAGCTGGTGGTGCTGATGCCCCTAATGGTAAAAACCAGCGTCTGCTTAAAATATTTGATGGCTGGTGTGATAATGTGATAGATTTGCTACTGGCCACAGAGGAAGATGCAATTCTACGACGCGACATGGTATGGCAAAGGACCCCAACTTTATCCTGGGGAAAGGGTAATGTGACCTTGCTTGGAGATTCTTTGTCCATGCTATGCAACCAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FAD_binding_3 FHA NAD_binding_8

Protein Analysis

81

Amino Acids

9.15

Weight (kDa)

5.11

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67030 AT5G67030
fragaria_vesca	FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080
malus_domestica	MD02G1172400.v1.1 MD15G1284500.v1.1
prunus_persica	Prupe.7G133100_v2.0.a1 Prupe.7G133100_v2.0.a1
pyrus_communis	pycom02g13890 pycom15g24720
rosa_chinensis	RchiOBHm_Chr2g0105701 RchiOBHm_Chr2g0138261 RchiOBHm_Chr5g0062971 RchiOBHm_Chr5g0062981
rosa_laevigata	RLG00000006425 RLG00000017450
rosa_multiflora	Rmu_sc0001051.1_g000057
rosa_roxburghii	Rroxscaffold_2G00137970 Rroxscaffold_2G00137980
rosa_rugosa	Rorug02G0129300 Rorug02G0129400 Rorug02G0129500 Rorug02G0129600
rosa_samantha	Rh2AG181000 Rh2BG190100 Rh2CG185200 Rh2DG187000 Rh4DG142500 Rh7AG320600 Rh7AG325500 Rh7BG187500 Rh7CG337400 Rh7CG342700
rosa_wichuraiana	Rw2G014150 Rw2G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	35
AccII	CGCG	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	70
AoxI	GGCC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	122
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	27, 170
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	2 cut(s)	34, 124
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	35
BsnI	GGCC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	122
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	27, 170
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BstUI	CGCG	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	122
CaiI	CAGNNNCTG	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	168
CseI	GACGC	2 cut(s)	56, 156
CviAII	CATG	2 cut(s)	154, 226
CviJI	RGCY	3 cut(s)	32, 90, 122
CviKI_1	RGCY	3 cut(s)	32, 90, 122
EaeI	YGGCCR	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	16
FaeI	CATG	2 cut(s)	157, 229
FaiI	YATR	5 cut(s)	12, 155, 160, 227, 232
FatI	CATG	2 cut(s)	153, 225
HaeIII	GGCC	1 cut(s)	122
HgaI	GACGC	2 cut(s)	56, 156
Hin1II	CATG	2 cut(s)	157, 229
HinfI	GANTC	1 cut(s)	215
Hpy99I	CGWCG	1 cut(s)	150
HpyCH4V	TGCA	4 cut(s)	4, 14, 137, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	157, 229
LpnPI	CCDG	7 cut(s)	18, 42, 76, 77, 104, 169, 196
LweI	GCATC	2 cut(s)	34, 124
MaeIII	GTNAC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	143
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	2 cut(s)	138, 240
MluNI	TGGCCA	1 cut(s)	122
MnlI	CCTC	1 cut(s)	121
Mox20I	TGGCCA	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	1 cut(s)	75
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	157, 229
NlaIV	GGNNCC	2 cut(s)	27, 170
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	215
PflMI	CCANNNNNTGG	1 cut(s)	35
PpuMI	RGGWCCY	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	27, 170
PspPI	GGNCC	1 cut(s)	168
PspPPI	RGGWCCY	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	2 cut(s)	34, 206
SfaNI	GCATC	2 cut(s)	34, 124
SinI	GGWCC	1 cut(s)	168
Sse9I	AATT	2 cut(s)	138, 240
SspI	AATATT	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	182
TasI	AATT	2 cut(s)	138, 240
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.