Rh2DG187000

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
16688531 .. 16695157
6627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG187000.1

Sequence Viewer

Length: 1740 bp
ATGGCGTCTGCTCTCTCCTTCAACTCCATGAACCTCTCTGCAACCGTTTTTTCAAGAACCCATTTCCCGATTCCGATCACCAGAGACTTCCCAGTTGAGTTTTCACCTTACATTCACTGTGACTATAATCTCAGAAGCAGAGCAAAAACAGGGCAGAAGCGGAATTTGACCGAGGTCAGAGCTACGGTGGCGACCAGAGAGAACAACCCAGTTGCATGCAACAGTTCTGATCAGAAGAAGCTTCGGATTTTGGTTGCTGGGGGAGGAATTGGAGGGCTGGTTTTCGCTTTGGCGGCGAAGAAGAAGGGGTTTGAGGTTTTGGTGTTTGAGAAGGATTTGAGTGCTGTGAGAGGTGAGGGACAGTACAGAGGTCCAATTCAGATACAGAGTAATGCCTTGGCTGCTTTGGAAGCTATTGATTTGGATGTGGCTGAGGAGGTTATGAGACTTGGCTGTATTACTGGTGATAGGATCAATGGCCTCGTTGATGGAGTTTCTGGAACTTGGTATGTCAAGTTTGACACATTCACTCCTGCAGCGGAACGGGGGCTTCCGGTTACAAGAGTCATAAGCCGAATGTTATTGCAGCAAATCCTTGCTGGTGCTGTTGGTGATGATATTATTTTTAATGGGAGTAATGTCGTTGATTTTCAGGATCTTGGAAACAAGGTTAATGTTGTGCTTGAGAATGGAGAGTGTTACGAAGGTGATCTTCTGGTTGGAGCTGATGGTATCTGGTCGAAGGTAAGGAAGAACTTATTTGGACTAGAGGAAGCTGTTTACTCGGGTTATACTTGTTATACTGGTATTACAGATTTTGTGCCTGCTGACATTAGTTCTGTTGGGTATCGAGTATTTCTGGGGCACAAACAATACTTCGTTTCTTCAGACGTAGGGGCAGGAAAGATGCAATGGTATGCGTTTCACAAGGAACCAGCTGGTGGTGCTGATGCCCCTAATGGTAAAAAGGAAAGGCTGCTTAAAATATTTGATGGCTGGTGTGATAATGTGATAGATTTGCTACTTGCCACAGAGGAAGATGCAATTCTACGACGCGACATATATGATAGGACCCCAACTTTATCCTGGGGAAAGGGTAATGTGACCTTGCTTGGAGATTCTGTCCATGCTATGCAACCAAATTTAGGTCAAGGGGGATGCATGGCCATTGAGGATGGTTATCAACTTGCATTGGAGCTTGAAAAAGCTATGAAGAAAAGCAGTGAACTGGGAACTCCTCCTGACATTGCTGCTTCTTTAAGAAGCTATGAGACCTCTAGAAAACTGCGGGTTGCCATTATTCACGGAATGGCTAGAATGGCTGCAATTATGGCTTCAACTTACAAGGCTTATCTGGGTGTAGGACTTGGTCCATTATCGTTTTTGACGAAGTTTCGGATACCACATCCAGGAAGAGTTGGTGGGAGAGTTTTTATTGACAAGGCAATGCCCTTGATGCTGAGTTGGGTCTTAGGTGGTAACAGCTCAAAACTTGAAGGAAGACCACCAAGTTGCAGGCTTTCAGACAAAGCTGATGATCAGTTACGAAGTTGGTTTGAGGACGATGATGCACTGGAGCGTGCTATTGATGGAGAGTGGTATCTCATACCTTGTGGACATGAAAATGGTGCTTCGCAACTTATTCATTTAAAAAGAGATGAGAAAACCCCCTGCATAATTGGGAACACCTCAAATGGGGATTGTTCAGTAATATCAGTTCCATTACCCCAGGTGATCTGA
Functional Annotation

Protein Analysis

579

Amino Acids

63.16

Weight (kDa)

6.07

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 82 - 405 9.3e-11 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 941
AccII CGCG 1 cut(s) 1056
AciI CCGC 4 cut(s) 160, 293, 539, 1288
AclWI GGATC 2 cut(s) 479, 663
AcoI YGGCCR 1 cut(s) 1164
AcsI RAATTY 2 cut(s) 163, 1141
AcuI CTGAAG 1 cut(s) 870
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 4 cut(s) 941, 1145, 1409, 1695
AgsI TTSAA 5 cut(s) 22, 54, 1202, 1338, 1496
AjnI CCWGG 3 cut(s) 1085, 1408, 1728
Alw26I GTCTC 3 cut(s) 78, 439, 1265
AlwI GGATC 2 cut(s) 479, 663
Ama87I CYCGRG 1 cut(s) 784
AoxI GGCC 2 cut(s) 478, 1164
ApeKI GCWGC 6 cut(s) 401, 536, 586, 976, 1250, 1322
ApoI RAATTY 2 cut(s) 163, 1141
AspS9I GGNCC 3 cut(s) 371, 1071, 1370
AsuHPI GGTGA 6 cut(s) 70, 96, 365, 476, 623, 719
AvaI CYCGRG 1 cut(s) 784
AvaII GGWCC 3 cut(s) 371, 1071, 1370
BaeGI GKGCMC 1 cut(s) 867
BalI TGGCCA 1 cut(s) 1166
BbsI GAAGAC 1 cut(s) 1507
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 6 cut(s) 388, 548, 598, 963, 1237, 1309
BccI CCATC 5 cut(s) 482, 722, 986, 1169, 1583
BciT130I CCWGG 3 cut(s) 1087, 1410, 1730
BciVI GTATCC 1 cut(s) 1392
BclI TGATCA 2 cut(s) 229, 1537
BcoDI GTCTC 3 cut(s) 78, 439, 1265
BfaI CTAG 3 cut(s) 767, 1278, 1314
BfmI CTRYAG 1 cut(s) 534
BfuI GTATCC 1 cut(s) 1392
BisI GCNGC 7 cut(s) 294, 402, 537, 587, 977, 1251, 1323
BlsI GCNGC 7 cut(s) 295, 403, 538, 588, 978, 1252, 1324
Bme1390I CCNGG 3 cut(s) 1087, 1410, 1730
Bme18I GGWCC 3 cut(s) 371, 1071, 1370
BmeT110I CYCGRG 1 cut(s) 784
BmgT120I GGNCC 3 cut(s) 371, 1071, 1370
BmiI GGNNCC 2 cut(s) 933, 1073
BmrFI CCNGG 3 cut(s) 1087, 1410, 1730
BmrI ACTGGG 3 cut(s) 86, 203, 1238
BmsI GCATC 6 cut(s) 897, 940, 1030, 1148, 1446, 1558
BmuI ACTGGG 3 cut(s) 86, 203, 1238
BoxI GACNNNNGTC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 1507
BpmI CTGGAG 1 cut(s) 1595
Bpu10I CCTNAGC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 704
BsaBI GATNNNNATC 2 cut(s) 74, 1179
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1265
BsaJI CCNNGG 4 cut(s) 171, 396, 1086, 1728
BsaWI WCCGGW 1 cut(s) 553
BsaXI ACNNNNNCTCC 6 cut(s) 264, 294, 514, 544, 1107, 1137
Bsc4I CCNNNNNNNGG 4 cut(s) 941, 1145, 1409, 1695
Bse1I ACTGG 6 cut(s) 92, 209, 466, 808, 1233, 1578
Bse3DI GCAATG 3 cut(s) 917, 1245, 1452
Bse8I GATNNNNATC 2 cut(s) 74, 1179
BseBI CCWGG 3 cut(s) 1087, 1410, 1730
BseDI CCNNGG 4 cut(s) 171, 396, 1086, 1728
BseGI GGATG 4 cut(s) 430, 1163, 1180, 1405
BseJI GATNNNNATC 2 cut(s) 74, 1179
BseLI CCNNNNNNNGG 4 cut(s) 941, 1145, 1409, 1695
BseMI GCAATG 3 cut(s) 917, 1245, 1452
BseMII CTCAG 3 cut(s) 145, 423, 1451
BseNI ACTGG 6 cut(s) 92, 209, 466, 808, 1233, 1578
BseRI GAGGAG 2 cut(s) 449, 1227
BseSI GKGCMC 1 cut(s) 867
BseXI GCAGC 6 cut(s) 388, 548, 598, 963, 1237, 1309
BseYI CCCAGC 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 1056
BshFI GGCC 2 cut(s) 480, 1166
BsiHKCI CYCGRG 1 cut(s) 784
BsiSI CCGG 1 cut(s) 554
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 4 cut(s) 941, 1145, 1409, 1695
BsmAI GTCTC 3 cut(s) 78, 439, 1265
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 2 cut(s) 480, 1166
Bso31I GGTCTC 1 cut(s) 1265
BsoBI CYCGRG 1 cut(s) 784
Bsp1286I GDGCHC 1 cut(s) 867
Bsp143I GATC 7 cut(s) 75, 229, 471, 655, 709, 1537, 1734
BspACI CCGC 4 cut(s) 160, 293, 539, 1288
BspANI GGCC 2 cut(s) 480, 1166
BspCNI CTCAG 3 cut(s) 144, 424, 1452
BspFNI CGCG 1 cut(s) 1056
BspLI GGNNCC 2 cut(s) 933, 1073
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 2 cut(s) 479, 663
BspTNI GGTCTC 1 cut(s) 1265
BsrDI GCAATG 3 cut(s) 917, 1245, 1452
BsrI ACTGG 6 cut(s) 92, 209, 466, 808, 1233, 1578
BssECI CCNNGG 4 cut(s) 171, 396, 1086, 1728
BssMI GATC 7 cut(s) 75, 229, 471, 655, 709, 1537, 1734
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 3 cut(s) 1087, 1410, 1730
Bst4CI ACNGT 5 cut(s) 46, 119, 187, 224, 363
Bst6I CTCTTC 1 cut(s) 1408
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 4 cut(s) 217, 825, 1517, 1581
BstDEI CTNAG 4 cut(s) 131, 432, 1460, 1471
BstF5I GGATG 4 cut(s) 430, 1163, 1180, 1405
BstFNI CGCG 1 cut(s) 1056
BstKTI GATC 7 cut(s) 78, 232, 474, 658, 712, 1540, 1737
BstMAI GTCTC 3 cut(s) 78, 439, 1265
BstMBI GATC 7 cut(s) 75, 229, 471, 655, 709, 1537, 1734
BstMWI GCNNNNNNNGC 8 cut(s) 188, 293, 401, 410, 944, 1319, 1331, 1456
BstNI CCWGG 3 cut(s) 1087, 1410, 1730
BstNSI RCATGY 1 cut(s) 219
BstPAI GACNNNNGTC 1 cut(s) 173
BstSCI CCNGG 3 cut(s) 1085, 1408, 1728
BstSFI CTRYAG 1 cut(s) 534
BstSLI GKGCMC 1 cut(s) 867
BstUI CGCG 1 cut(s) 1056
BstV1I GCAGC 6 cut(s) 388, 548, 598, 963, 1237, 1309
BstV2I GAAGAC 1 cut(s) 1507
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
BsuI GTATCC 1 cut(s) 1392
BsuRI GGCC 2 cut(s) 480, 1166
BtsCI GGATG 4 cut(s) 430, 1163, 1180, 1405
BtsI GCAGTG 1 cut(s) 1228
BtsIMutI CAGTG 3 cut(s) 115, 1228, 1571
Cac8I GCNNGC 4 cut(s) 217, 825, 1517, 1581
Cfr13I GGNCC 3 cut(s) 371, 1071, 1370
CseI GACGC 1 cut(s) 1062
Csp6I GTAC 1 cut(s) 364
CviAII CATG 5 cut(s) 28, 216, 1127, 1162, 1619
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 4 cut(s) 131, 432, 1460, 1471
DpnI GATC 7 cut(s) 77, 231, 473, 657, 711, 1539, 1736
DpnII GATC 7 cut(s) 75, 229, 471, 655, 709, 1537, 1734
DraI TTTAAA 1 cut(s) 1650
EaeI YGGCCR 1 cut(s) 1164
Eam1104I CTCTTC 1 cut(s) 1408
EarI CTCTTC 1 cut(s) 1408
Eco130I CCWWGG 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 1265
Eco47I GGWCC 3 cut(s) 371, 1071, 1370
Eco57I CTGAAG 1 cut(s) 870
Eco88I CYCGRG 1 cut(s) 784
EcoO109I RGGNCCY 1 cut(s) 1071
EcoRII CCWGG 3 cut(s) 1085, 1408, 1728
EcoT14I CCWWGG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 1163
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 5 cut(s) 31, 219, 1130, 1165, 1622
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 1 cut(s) 372
FatI CATG 5 cut(s) 27, 215, 1126, 1161, 1618
FauI CCCGC 1 cut(s) 1281
FbaI TGATCA 2 cut(s) 229, 1537
Fnu4HI GCNGC 7 cut(s) 294, 402, 537, 587, 977, 1251, 1323
FokI GGATG 4 cut(s) 437, 1170, 1187, 1392
Fsp4HI GCNGC 7 cut(s) 294, 402, 537, 587, 977, 1251, 1323
FspBI CTAG 3 cut(s) 767, 1278, 1314
GluI GCNGC 7 cut(s) 294, 402, 537, 587, 977, 1251, 1323
GsaI CCCAGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 1595
HaeIII GGCC 2 cut(s) 480, 1166
HapII CCGG 1 cut(s) 554
HgaI GACGC 1 cut(s) 1062
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 31, 219, 1130, 1165, 1622
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 3 cut(s) 70, 564, 1118
HpaII CCGG 1 cut(s) 554
HphI GGTGA 6 cut(s) 70, 96, 365, 476, 623, 719
Hpy166II GTNNAC 3 cut(s) 781, 1226, 1616
Hpy188III TCNNGA 6 cut(s) 54, 67, 498, 653, 1241, 1278
Hpy8I GTNNAC 3 cut(s) 781, 1226, 1616
Hpy99I CGWCG 1 cut(s) 1056
HpyAV CCTTC 6 cut(s) 28, 298, 325, 698, 736, 1490
HpyCH4III ACNGT 5 cut(s) 46, 119, 187, 224, 363
HpyCH4IV ACGT 1 cut(s) 891
HpyF10VI GCNNNNNNNGC 8 cut(s) 188, 293, 401, 410, 944, 1319, 1331, 1456
HpyF3I CTNAG 4 cut(s) 131, 432, 1460, 1471
HpySE526I ACGT 1 cut(s) 891
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 31, 219, 1130, 1165, 1622
Ksp22I TGATCA 2 cut(s) 229, 1537
Kzo9I GATC 7 cut(s) 75, 229, 471, 655, 709, 1537, 1734
LmnI GCTCC 3 cut(s) 722, 1195, 1576
Lsp1109I GCAGC 6 cut(s) 388, 548, 598, 963, 1237, 1309
LweI GCATC 6 cut(s) 897, 940, 1030, 1148, 1446, 1558
MaeI CTAG 3 cut(s) 767, 1278, 1314
MaeII ACGT 1 cut(s) 891
MaeIII GTNAC 6 cut(s) 119, 556, 698, 1102, 1478, 1542
MalI GATC 7 cut(s) 77, 231, 473, 657, 711, 1539, 1736
MboI GATC 7 cut(s) 75, 229, 471, 655, 709, 1537, 1734
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 1 cut(s) 867
MlsI TGGCCA 1 cut(s) 1166
MluCI AATT 7 cut(s) 163, 267, 375, 1044, 1141, 1326, 1677
MluNI TGGCCA 1 cut(s) 1166
MlyI GAGTC 1 cut(s) 573
MmeI TCCRAC 1 cut(s) 700
Mox20I TGGCCA 1 cut(s) 1166
Mph1103I ATGCAT 1 cut(s) 1163
MscI TGGCCA 1 cut(s) 1166
MseI TTAA 5 cut(s) 627, 672, 981, 1259, 1649
MslI CAYNNNNRTG 1 cut(s) 1623
Msp20I TGGCCA 1 cut(s) 1166
MspA1I CMGCKG 2 cut(s) 539, 938
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 3 cut(s) 1087, 1410, 1730
MvaI CCWGG 3 cut(s) 1087, 1410, 1730
MvnI CGCG 1 cut(s) 1056
MwoI GCNNNNNNNGC 8 cut(s) 188, 293, 401, 410, 944, 1319, 1331, 1456
NdeII GATC 7 cut(s) 75, 229, 471, 655, 709, 1537, 1734
NlaIII CATG 5 cut(s) 31, 219, 1130, 1165, 1622
NlaIV GGNNCC 2 cut(s) 933, 1073
NmuCI GTSAC 2 cut(s) 119, 1102
NsiI ATGCAT 1 cut(s) 1163
NspI RCATGY 1 cut(s) 219
PaeI GCATGC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 1385
PfeI GAWTC 2 cut(s) 70, 1118
PflFI GACNNNGTC 1 cut(s) 1368
PflMI CCANNNNNTGG 1 cut(s) 941
PfoI TCCNGGA 1 cut(s) 1408
PkrI GCNGC 7 cut(s) 295, 403, 538, 588, 978, 1252, 1324
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
PpuMI RGGWCCY 1 cut(s) 1071
PshAI GACNNNNGTC 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 1071
Psp6I CCWGG 3 cut(s) 1085, 1408, 1728
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 3 cut(s) 1085, 1408, 1728
PspN4I GGNNCC 2 cut(s) 933, 1073
PspPI GGNCC 3 cut(s) 371, 1071, 1370
PspPPI RGGWCCY 1 cut(s) 1071
PsrI GAACNNNNNNTAC 2 cut(s) 1701, 1733
PstI CTGCAG 1 cut(s) 538
PsuI RGATCY 1 cut(s) 655
PsyI GACNNNGTC 1 cut(s) 1368
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 1623
SaqAI TTAA 5 cut(s) 627, 672, 981, 1259, 1649
SatI GCNGC 7 cut(s) 294, 402, 537, 587, 977, 1251, 1323
Sau3AI GATC 7 cut(s) 75, 229, 471, 655, 709, 1537, 1734
Sau96I GGNCC 3 cut(s) 371, 1071, 1370
SchI GAGTC 1 cut(s) 573
ScrFI CCNGG 3 cut(s) 1087, 1410, 1730
SduI GDGCHC 1 cut(s) 867
SfaNI GCATC 6 cut(s) 897, 940, 1030, 1148, 1446, 1558
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 3 cut(s) 371, 1071, 1370
SmiMI CAYNNNNRTG 1 cut(s) 1623
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
SphI GCATGC 1 cut(s) 219
Sse9I AATT 7 cut(s) 163, 267, 375, 1044, 1141, 1326, 1677
SsiI CCGC 4 cut(s) 160, 293, 539, 1288
SspI AATATT 1 cut(s) 987
SspMI CTAG 3 cut(s) 767, 1278, 1314
StyD4I CCNGG 3 cut(s) 1085, 1408, 1728
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 5 cut(s) 46, 119, 187, 224, 363
TaiI ACGT 1 cut(s) 894
TaqI TCGA 2 cut(s) 740, 850
TaqII GACCGA 1 cut(s) 185
TasI AATT 7 cut(s) 163, 267, 375, 1044, 1141, 1326, 1677
TatI WGTACW 1 cut(s) 363
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 70, 1118
Tru1I TTAA 5 cut(s) 627, 672, 981, 1259, 1649
Tru9I TTAA 5 cut(s) 627, 672, 981, 1259, 1649
TscAI CASTG 3 cut(s) 122, 1228, 1578
TseFI GTSAC 2 cut(s) 119, 1102
TseI GCWGC 6 cut(s) 401, 536, 586, 976, 1250, 1322
Tsp45I GTSAC 2 cut(s) 119, 1102
TspDTI ATGAA 4 cut(s) 44, 1226, 1634, 1635
TspGWI ACGGA 1 cut(s) 1320
TspRI CASTG 3 cut(s) 122, 1228, 1578
Tth111I GACNNNGTC 1 cut(s) 1368
Van91I CCANNNNNTGG 1 cut(s) 941
VpaK11BI GGWCC 3 cut(s) 371, 1071, 1370
XapI RAATTY 2 cut(s) 163, 1141
XbaI TCTAGA 1 cut(s) 1277
XceI RCATGY 1 cut(s) 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 1083
XspI CTAG 3 cut(s) 767, 1278, 1314
Zsp2I ATGCAT 1 cut(s) 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.