Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008106

Physical Location & Seq

Genomic Coordinates Forward (+)

12078791 .. 12080966

Gene Structure 2176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGTTCCATGGCCACCTTTCTTCCGCTCTATCTATCTATATCCTCTTCATTTTCTTAATTTTCAAGCATCTTTACCGAAAGGTTAAGAAATTCCTTGGCGAAATTGTATATTCAGAGAAGATTGATTGGTACCACTTTCTGATGGCATCAAGCACCCAAACAGCCTCTACGTCCATTCCTATAGCTTCTTCATGGGAACATGATGTGTTTTTGAGTTTTAGGGGGAAAGAAACCCGCAAAGGTTTTACAGGCCATCTACATAGAGCATTGAAGGGGAAAAAATCAATCAAAGTTTTCAAGGATGACCTTCAGCTTAAGAGAGGCACAACTATCCCTTTAGAGCTCTTGACTGCAATTGAAGAATCAAGGTTCGCCCTTATTGTCTTCTCACCAGATTACGCCAGTTCGAAATGGTGCTTAGATGAGCTTGTAAAGATTTATGAATGCATGCAAGTAAGGGAGACAATCATCCCGATCTTTTATAATGTGGAACCATCCCACGTAAGACATCAGAGTGGAACTTTTGAAGAAGCCTTCAAGAAGCATGAAAATGGCAGTGAACACAACACAGAAACGGTGCAACGGTGGAGAACAGCTTTGACAAAAGTGGCTGACATGTCTGGGTGGAATTTGGCAGAATATGGGGAAGAGACCAAGTTTATCGACGACATTGTGGACGATCTGTATAACAAACTGGTATGCGCTGGCTGCAACAAGAGGGTTGTTGATGGCGGTCTTAAATGCTTGCGTGCTGTTTGGCATCAAGCATGTCTTCTCTGCAAAGGTTGCAAACGTCCATGTACCAATGGAGACTATGAGGAATATGGGGATCATTCTTACCATAAACGCTGCTATGAGCAACTATGTATGGTATGCATCGTTTGCAAGAAACCTATCAAAGATAATTCAGAAAGTCAAGGTGAGTATAAGGAACATCCATTCTGGCGACAAAGATATTGCCCCTCCCATGCAAAGGATGGTACTCCTAGGTGTTGTAGCTGTGAAAGATTGAAGCCAAGGGACACAACATATTATAAGCTCGATGACGGTCGGAAACTATGTACGGATTGTAAAGAATCCATTATCAATACTGCTAAAGGAGGCCGATCCATTTTCCTTGAAGTACGAAAATTTTATAAGAAATTAAACGTGATAGTAGAGAAGATTCCGGTGCGGTTGGTCAGCAGACAAGTGATAATCGATGTCATGAAGGAGGGAAATGAAGGTTCTGATCGTCAATTGCCGGTAATAAGAGCAGTCTGCTTGTTTGAAAGGAATACTACCAGTGCCATTATGGGGAGGCCGAGCCAGGTTTGGTGTGAAGTTAAAGAAATTTTAATCTGGTACGGCCTTCCTAGAATATTGACAGGGTCACTTCTAGCTCAACAGATGATCGGTGCGTGGTTAAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

472

Amino Acids

54.41

Weight (kDa)

8.91

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	67 - 232	1.4e-50	TIR domain
TIR_2	PF13676	69 - 165	1.8e-13	TIR domain
LIM	PF00412	234 - 287	3.8e-06	LIM domain
DA1-like	PF12315	385 - 470	1.9e-11	Protein DA1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008106)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19960
malus_domestica	MD10G1020800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0111871 RchiOBHm_Chr2g0111901
rosa_laevigata	RLG00000017927 RLG00000017933 RLG00000017934 RLG00000017935
rosa_multiflora	Rmu_co8359603.1_g000001 Rmu_co8457531.1_g000001 Rmu_sc0003656.1_g000003 Rmu_sc0006833.1_g000002 Rmu_sc0006833.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307790
rosa_rugosa	Rorug02G0176500 Rorug02G0176800 Rorug02G0176900
rosa_samantha	Rh2AG229200 Rh2BG241700 Rh2BG242000 Rh2CG233400 Rh2DG237000
rosa_wichuraiana	Rw2G017720 Rw2G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	483, 1035, 1137
Acc65I	GGTACC	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	26
AciI	CCGC	4 cut(s)	24, 235, 732, 1174
AclWI	GGATC	2 cut(s)	837, 1101
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	4 cut(s)	89, 628, 1130, 1332
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	6 cut(s)	131, 802, 982, 1063, 1125, 1346
AfiI	CCNNNNNNNGG	2 cut(s)	973, 1296
AflII	CTTAAG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	9 cut(s)	64, 271, 298, 359, 527, 538, 1012, 1121, 1271
AjnI	CCWGG	1 cut(s)	1308
AluBI	AGCT	8 cut(s)	185, 313, 343, 427, 596, 999, 1039, 1382
AluI	AGCT	8 cut(s)	185, 313, 343, 427, 596, 999, 1039, 1382
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	3 cut(s)	455, 644, 804
AlwI	GGATC	2 cut(s)	837, 1101
AoxI	GGCC	5 cut(s)	10, 250, 1102, 1301, 1348
ApeKI	GCWGC	2 cut(s)	708, 849
ApoI	RAATTY	4 cut(s)	89, 628, 1130, 1332
Asp718I	GGTACC	1 cut(s)	129
AspA2I	CCTAGG	1 cut(s)	986
AspLEI	GCGC	1 cut(s)	704
AsuHPI	GGTGA	2 cut(s)	381, 932
AsuII	TTCGAA	1 cut(s)	407
AvrII	CCTAGG	1 cut(s)	986
BalI	TGGCCA	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	345
BbsI	GAAGAC	2 cut(s)	376, 764
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	695, 836
BccI	CCATC	5 cut(s)	136, 261, 502, 722, 971
BceAI	ACGGC	1 cut(s)	1363
BciT130I	CCWGG	1 cut(s)	1310
BcoDI	GTCTC	3 cut(s)	455, 644, 804
BfaI	CTAG	3 cut(s)	987, 1356, 1379
BfmI	CTRYAG	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	2 cut(s)	709, 850
BlnI	CCTAGG	1 cut(s)	986
BlsI	GCNGC	2 cut(s)	710, 851
Bme1390I	CCNGG	1 cut(s)	1310
BmiI	GGNNCC	2 cut(s)	131, 492
BmrFI	CCNGG	1 cut(s)	1310
BmsI	GCATC	4 cut(s)	76, 155, 769, 885
BpiI	GAAGAC	2 cut(s)	376, 764
Bpu14I	TTCGAA	1 cut(s)	407
Bsa29I	ATCGAT	1 cut(s)	1200
BsaAI	YACGTR	1 cut(s)	502
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	4 cut(s)	7, 94, 986, 1016
BsaWI	WCCGGW	1 cut(s)	1168
Bsc4I	CCNNNNNNNGG	2 cut(s)	973, 1296
Bse118I	RCCGGY	1 cut(s)	1243
Bse1I	ACTGG	3 cut(s)	402, 699, 1284
BseBI	CCWGG	1 cut(s)	1310
BseCI	ATCGAT	1 cut(s)	1200
BseDI	CCNNGG	4 cut(s)	7, 94, 986, 1016
BseGI	GGATG	5 cut(s)	307, 468, 494, 934, 982
BseLI	CCNNNNNNNGG	2 cut(s)	973, 1296
BseNI	ACTGG	3 cut(s)	402, 699, 1284
BseXI	GCAGC	2 cut(s)	695, 836
Bsh1285I	CGRYCG	1 cut(s)	1051
BshFI	GGCC	5 cut(s)	12, 252, 1104, 1303, 1350
BshNI	GGYRCC	1 cut(s)	129
BshVI	ATCGAT	1 cut(s)	1200
BsiEI	CGRYCG	1 cut(s)	1051
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	1169, 1244
BslFI	GGGAC	1 cut(s)	1034
BslI	CCNNNNNNNGG	2 cut(s)	973, 1296
BsmAI	GTCTC	3 cut(s)	455, 644, 804
BsmFI	GGGAC	1 cut(s)	1034
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	5 cut(s)	12, 252, 1104, 1303, 1350
Bso31I	GGTCTC	1 cut(s)	644
Bsp119I	TTCGAA	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	6 cut(s)	474, 679, 829, 1106, 1231, 1392
Bsp19I	CCATGG	1 cut(s)	7
BspACI	CCGC	4 cut(s)	24, 235, 732, 1174
BspANI	GGCC	5 cut(s)	12, 252, 1104, 1303, 1350
BspDI	ATCGAT	1 cut(s)	1200
BspHI	TCATGA	1 cut(s)	1206
BspLI	GGNNCC	2 cut(s)	131, 492
BspPI	GGATC	2 cut(s)	837, 1101
BspT104I	TTCGAA	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	129
BspTI	CTTAAG	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	644
BsrBI	CCGCTC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	1243
BsrI	ACTGG	3 cut(s)	402, 699, 1284
BssAI	RCCGGY	1 cut(s)	1243
BssECI	CCNNGG	4 cut(s)	7, 94, 986, 1016
BssMI	GATC	6 cut(s)	474, 679, 829, 1106, 1231, 1392
BssT1I	CCWWGG	4 cut(s)	7, 94, 986, 1016
Bst2UI	CCWGG	1 cut(s)	1310
Bst4CI	ACNGT	3 cut(s)	577, 585, 1049
Bst6I	CTCTTC	2 cut(s)	50, 642
BstAFI	CTTAAG	1 cut(s)	314
BstAPI	GCANNNNNTGC	2 cut(s)	786, 882
BstBAI	YACGTR	1 cut(s)	502
BstBI	TTCGAA	1 cut(s)	407
BstC8I	GCNNGC	4 cut(s)	449, 706, 746, 750
BstDEI	CTNAG	1 cut(s)	418
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	5 cut(s)	307, 468, 494, 934, 982
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	6 cut(s)	477, 682, 832, 1109, 1234, 1395
BstMAI	GTCTC	3 cut(s)	455, 644, 804
BstMBI	GATC	6 cut(s)	474, 679, 829, 1106, 1231, 1392
BstMCI	CGRYCG	1 cut(s)	1051
BstMWI	GCNNNNNNNGC	3 cut(s)	708, 786, 882
BstNI	CCWGG	1 cut(s)	1310
BstNSI	RCATGY	3 cut(s)	451, 619, 771
BstSCI	CCNGG	1 cut(s)	1308
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	695, 836
BstV2I	GAAGAC	2 cut(s)	376, 764
Bsu15I	ATCGAT	1 cut(s)	1200
BsuRI	GGCC	5 cut(s)	12, 252, 1104, 1303, 1350
BsuTUI	ATCGAT	1 cut(s)	1200
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	5 cut(s)	307, 468, 494, 934, 982
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	562, 1291
Cac8I	GCNNGC	4 cut(s)	449, 706, 746, 750
CciI	TCATGA	1 cut(s)	1206
CfoI	GCGC	1 cut(s)	704
Cfr10I	RCCGGY	1 cut(s)	1243
ClaI	ATCGAT	1 cut(s)	1200
Csp6I	GTAC	6 cut(s)	130, 801, 981, 1062, 1124, 1345
CviQI	GTAC	6 cut(s)	130, 801, 981, 1062, 1124, 1345
DdeI	CTNAG	1 cut(s)	418
DpnI	GATC	6 cut(s)	476, 681, 831, 1108, 1233, 1394
DpnII	GATC	6 cut(s)	474, 679, 829, 1106, 1231, 1392
EaeI	YGGCCR	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	50, 642
EarI	CTCTTC	2 cut(s)	50, 642
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	4 cut(s)	7, 94, 986, 1016
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	644
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	1308
EcoT14I	CCWWGG	4 cut(s)	7, 94, 986, 1016
EcoT22I	ATGCAT	2 cut(s)	449, 878
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	4 cut(s)	7, 94, 986, 1016
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FaqI	GGGAC	1 cut(s)	1034
FauI	CCCGC	1 cut(s)	242
Fnu4HI	GCNGC	2 cut(s)	709, 850
FokI	GGATG	5 cut(s)	314, 455, 481, 921, 989
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	709, 850
FspBI	CTAG	3 cut(s)	987, 1356, 1379
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	2 cut(s)	709, 850
HaeIII	GGCC	5 cut(s)	12, 252, 1104, 1303, 1350
HapII	CCGG	2 cut(s)	1169, 1244
HhaI	GCGC	1 cut(s)	704
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HinfI	GANTC	3 cut(s)	362, 1076, 1165
HpaII	CCGG	2 cut(s)	1169, 1244
HphI	GGTGA	2 cut(s)	381, 932
Hpy166II	GTNNAC	2 cut(s)	560, 676
Hpy188I	TCNGA	6 cut(s)	115, 141, 513, 910, 1053, 1231
Hpy188III	TCNNGA	4 cut(s)	346, 472, 538, 1207
Hpy8I	GTNNAC	2 cut(s)	560, 676
Hpy99I	CGWCG	1 cut(s)	668
HpyAV	CCTTC	6 cut(s)	265, 317, 544, 1204, 1217, 1361
HpyCH4III	ACNGT	3 cut(s)	577, 585, 1049
HpyCH4IV	ACGT	4 cut(s)	170, 501, 793, 1149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	708, 786, 882
HpyF3I	CTNAG	1 cut(s)	418
HpySE526I	ACGT	4 cut(s)	170, 501, 793, 1149
HspAI	GCGC	1 cut(s)	702
KpnI	GGTACC	1 cut(s)	133
Kzo9I	GATC	6 cut(s)	474, 679, 829, 1106, 1231, 1392
Lsp1109I	GCAGC	2 cut(s)	695, 836
LweI	GCATC	4 cut(s)	76, 155, 769, 885
MaeI	CTAG	3 cut(s)	987, 1356, 1379
MaeII	ACGT	4 cut(s)	170, 501, 793, 1149
MaeIII	GTNAC	1 cut(s)	1371
MalI	GATC	6 cut(s)	476, 681, 831, 1108, 1233, 1394
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	6 cut(s)	474, 679, 829, 1106, 1231, 1392
MfeI	CAATTG	2 cut(s)	354, 1238
MhlI	GDGCHC	1 cut(s)	345
MlsI	TGGCCA	1 cut(s)	12
MluNI	TGGCCA	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	1031
MnlI	CCTC	9 cut(s)	53, 175, 314, 711, 811, 973, 1094, 1207, 1293
Mox20I	TGGCCA	1 cut(s)	12
Mph1103I	ATGCAT	2 cut(s)	449, 878
MscI	TGGCCA	1 cut(s)	12
MseI	TTAA	9 cut(s)	56, 84, 315, 738, 1145, 1326, 1337, 1406, 1414
MslI	CAYNNNNRTG	2 cut(s)	513, 549
Msp20I	TGGCCA	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	2 cut(s)	1169, 1244
MspR9I	CCNGG	1 cut(s)	1310
MunI	CAATTG	2 cut(s)	354, 1238
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	1310
MwoI	GCNNNNNNNGC	3 cut(s)	708, 786, 882
NcoI	CCATGG	1 cut(s)	7
NdeII	GATC	6 cut(s)	474, 679, 829, 1106, 1231, 1392
NlaIV	GGNNCC	2 cut(s)	131, 492
NmeAIII	GCCGAG	1 cut(s)	1329
NmuCI	GTSAC	1 cut(s)	1371
NsiI	ATGCAT	2 cut(s)	449, 878
NspI	RCATGY	3 cut(s)	451, 619, 771
NspV	TTCGAA	1 cut(s)	407
PaeI	GCATGC	1 cut(s)	451
PagI	TCATGA	1 cut(s)	1206
PciI	ACATGT	1 cut(s)	615
PctI	GAATGC	1 cut(s)	449
PfeI	GAWTC	3 cut(s)	362, 1076, 1165
PflFI	GACNNNGTC	1 cut(s)	1369
PkrI	GCNGC	2 cut(s)	710, 851
Ppu21I	YACGTR	1 cut(s)	502
PscI	ACATGT	1 cut(s)	615
PsiI	TTATAA	3 cut(s)	483, 1035, 1137
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	1308
PspGI	CCWGG	1 cut(s)	1308
PspN4I	GGNNCC	2 cut(s)	131, 492
PsyI	GACNNNGTC	1 cut(s)	1369
RsaI	GTAC	6 cut(s)	131, 802, 982, 1063, 1125, 1346
RsaNI	GTAC	6 cut(s)	130, 801, 981, 1062, 1124, 1345
RseI	CAYNNNNRTG	2 cut(s)	513, 549
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	9 cut(s)	56, 84, 315, 738, 1145, 1326, 1337, 1406, 1414
SatI	GCNGC	2 cut(s)	709, 850
Sau3AI	GATC	6 cut(s)	474, 679, 829, 1106, 1231, 1392
ScrFI	CCNGG	1 cut(s)	1310
SduI	GDGCHC	1 cut(s)	345
SfaNI	GCATC	4 cut(s)	76, 155, 769, 885
SfcI	CTRYAG	1 cut(s)	180
SfuI	TTCGAA	1 cut(s)	407
SmiMI	CAYNNNNRTG	2 cut(s)	513, 549
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SphI	GCATGC	1 cut(s)	451
SsiI	CCGC	4 cut(s)	24, 235, 732, 1174
SspI	AATATT	1 cut(s)	1362
SspMI	CTAG	3 cut(s)	987, 1356, 1379
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	1308
StyI	CCWWGG	4 cut(s)	7, 94, 986, 1016
TaaI	ACNGT	3 cut(s)	577, 585, 1049
TaiI	ACGT	4 cut(s)	173, 504, 796, 1152
TaqI	TCGA	4 cut(s)	407, 663, 1041, 1200
TfiI	GAWTC	3 cut(s)	362, 1076, 1165
Tru1I	TTAA	9 cut(s)	56, 84, 315, 738, 1145, 1326, 1337, 1406, 1414
Tru9I	TTAA	9 cut(s)	56, 84, 315, 738, 1145, 1326, 1337, 1406, 1414
TscAI	CASTG	2 cut(s)	562, 1291
TseFI	GTSAC	1 cut(s)	1371
TseI	GCWGC	2 cut(s)	708, 849
Tsp45I	GTSAC	1 cut(s)	1371
TspDTI	ATGAA	6 cut(s)	37, 180, 456, 561, 1223, 1236
TspGWI	ACGGA	1 cut(s)	1079
TspRI	CASTG	2 cut(s)	562, 1291
Tth111I	GACNNNGTC	1 cut(s)	1369
Vha464I	CTTAAG	1 cut(s)	314
XapI	RAATTY	4 cut(s)	89, 628, 1130, 1332
XceI	RCATGY	3 cut(s)	451, 619, 771
XcmI	CCANNNNNNNNNTGG	2 cut(s)	974, 1291
XmaJI	CCTAGG	1 cut(s)	986
XspI	CTAG	3 cut(s)	987, 1356, 1379
Zsp2I	ATGCAT	2 cut(s)	449, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.