Rmu_sc0006833.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006833.1
OG0008106
Physical Location & Seq
Reverse (-)
11162 .. 11638
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006833.1_g000002.1.cds

Sequence Viewer

Length: 477 bp
atgtggagcccaccccaatcagtcgggcaaattgatgggcaagaattggtcatccaattgcccaggcagctggtccccacgtgggccccagcaattagtcaggcaatttttcattggtgcattgcccatttgctaacaattgcccaattagtcacccaatcagtgcatgggtgcatctgctctaaaggttatcccaacttgtgccctgagcttgaaaaaggtgctatcatctggtatggccttcctaggatgttgacagggtcacttctagctcaacagatgataagtgcatggctaaggcttaaaggttatcccaacttgtgccctgagcttgaaaaaggtatttaccaatatttggcacataggtggttggagtattctaattctgattcatctagaaaattagctgaggttgagcagaagcttttcatatttaggaaagtaaaaattgagtcagattgtggagaagcattctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.94

Weight (kDa)

7.61

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 355
AcvI CACGTG 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 82, 355
AgsI TTSAA 2 cut(s) 215, 335
AjnI CCWGG 1 cut(s) 62
AleI CACNNNNGTG 1 cut(s) 364
AluBI AGCT 6 cut(s) 70, 211, 272, 331, 407, 424
AluI AGCT 6 cut(s) 70, 211, 272, 331, 407, 424
AoxI GGCC 2 cut(s) 84, 238
ApaI GGGCCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 67
Asp700I GAANNNNTTC 1 cut(s) 425
AspA2I CCTAGG 1 cut(s) 245
AspS9I GGNCC 3 cut(s) 73, 84, 85
AsuHPI GGTGA 1 cut(s) 145
AvaII GGWCC 1 cut(s) 73
AvrII CCTAGG 1 cut(s) 245
BaeGI GKGCMC 3 cut(s) 88, 206, 326
BanII GRGCYC 2 cut(s) 11, 88
BbrPI CACGTG 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 64
BfaI CTAG 3 cut(s) 246, 269, 396
BisI GCNGC 1 cut(s) 68
BlnI CCTAGG 1 cut(s) 245
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 3 cut(s) 73, 84, 85
BmiI GGNNCC 4 cut(s) 8, 75, 86, 87
BmrFI CCNGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 183
Bpu10I CCTNAGC 4 cut(s) 207, 296, 327, 408
BsaAI YACGTR 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 62, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 355
Bse3DI GCAATG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 62, 245
BseGI GGATG 2 cut(s) 51, 255
BseLI CCNNNNNNNGG 2 cut(s) 82, 355
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 3 cut(s) 198, 318, 399
BseSI GKGCMC 3 cut(s) 88, 206, 326
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 88
BshFI GGCC 2 cut(s) 86, 240
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 82, 355
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 2 cut(s) 86, 240
Bsp120I GGGCCC 1 cut(s) 84
Bsp1286I GDGCHC 4 cut(s) 11, 88, 206, 326
BspANI GGCC 2 cut(s) 86, 240
BspCNI CTCAG 3 cut(s) 199, 319, 400
BspLI GGNNCC 4 cut(s) 8, 75, 86, 87
BsrDI GCAATG 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 62, 245
BssT1I CCWWGG 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 64
BstBAI YACGTR 1 cut(s) 81
BstDEI CTNAG 4 cut(s) 207, 296, 327, 408
BstF5I GGATG 2 cut(s) 51, 255
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstSLI GKGCMC 3 cut(s) 88, 206, 326
BstV1I GCAGC 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 70
BsuRI GGCC 2 cut(s) 86, 240
BtsCI GGATG 2 cut(s) 51, 255
BtsIMutI CAGTG 1 cut(s) 168
Cfr13I GGNCC 3 cut(s) 73, 84, 85
CviAII CATG 2 cut(s) 167, 291
DdeI CTNAG 4 cut(s) 207, 296, 327, 408
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 2 cut(s) 11, 88
Eco47I GGWCC 1 cut(s) 73
Eco72I CACGTG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 245
EcoT38I GRGCYC 2 cut(s) 11, 88
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 2 cut(s) 170, 294
FaiI YATR 5 cut(s) 168, 237, 292, 363, 431
FaqI GGGAC 1 cut(s) 59
FatI CATG 2 cut(s) 166, 290
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 2 cut(s) 38, 262
FriOI GRGCYC 2 cut(s) 11, 88
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 3 cut(s) 246, 269, 396
GluI GCNGC 1 cut(s) 68
GsaI CCCAGC 1 cut(s) 92
HaeIII GGCC 2 cut(s) 86, 240
Hin1II CATG 2 cut(s) 170, 294
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 2 cut(s) 389, 452
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 3 cut(s) 388, 457, 476
Hpy188III TCNNGA 1 cut(s) 396
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 120, 166, 174, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 4 cut(s) 207, 296, 327, 408
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 2 cut(s) 170, 294
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 9 cut(s) 49, 56, 76, 86, 102, 217, 219, 243, 339
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 183
MaeI CTAG 3 cut(s) 246, 269, 396
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 151, 261
MfeI CAATTG 2 cut(s) 56, 138
MhlI GDGCHC 4 cut(s) 11, 88, 206, 326
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 425
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 364
MspA1I CMGCKG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 64
MunI CAATTG 2 cut(s) 56, 138
Mva1269I GAATGC 1 cut(s) 470
MvaI CCWGG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 67
NlaIII CATG 2 cut(s) 170, 294
NlaIV GGNNCC 4 cut(s) 8, 75, 86, 87
NmuCI GTSAC 2 cut(s) 151, 261
OliI CACNNNNGTG 1 cut(s) 364
PctI GAATGC 1 cut(s) 470
PdmI GAANNNNTTC 1 cut(s) 425
PfeI GAWTC 1 cut(s) 389
PflFI GACNNNGTC 1 cut(s) 259
PflMI CCANNNNNTGG 1 cut(s) 355
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 1 cut(s) 460
PmaCI CACGTG 1 cut(s) 81
PmlI CACGTG 1 cut(s) 81
PpsI GAGTC 1 cut(s) 460
Ppu21I YACGTR 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 62
PspCI CACGTG 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 4 cut(s) 8, 75, 86, 87
PspOMI GGGCCC 1 cut(s) 84
PspPI GGNCC 3 cut(s) 73, 84, 85
PsyI GACNNNGTC 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 68
Sau96I GGNCC 3 cut(s) 73, 84, 85
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 4 cut(s) 11, 88, 206, 326
SfaNI GCATC 1 cut(s) 183
SinI GGWCC 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 364
SspI AATATT 1 cut(s) 353
SspMI CTAG 3 cut(s) 246, 269, 396
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 245
TaiI ACGT 1 cut(s) 83
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 2 cut(s) 151, 261
TseI GCWGC 1 cut(s) 67
Tsp45I GTSAC 2 cut(s) 151, 261
TspDTI ATGAA 3 cut(s) 101, 381, 418
TspRI CASTG 1 cut(s) 168
Tth111I GACNNNGTC 1 cut(s) 259
Van91I CCANNNNNTGG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 73
XbaI TCTAGA 1 cut(s) 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmaJI CCTAGG 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 425
XspI CTAG 3 cut(s) 246, 269, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.