Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008106

Physical Location & Seq

Genomic Coordinates Reverse (-)

16231050 .. 16232136

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0176500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATATTGACATGCTTAAATCATCATCAGCTGGTCATGATCTCCATCATCCTCATCACCACATGGACATGATGACAATGATGATGCAGCAGAGTCCTGAGTTCTACCATAACACTCCTCCCACATTTTCTGAGATAGATTTCACTTGGGGATCATCAATTACCCCCAACAACATTGGAACCATAGTACCACAACCCATGTTCCATAACCCAACTTCACCCTCACAATCACAGCCCACATTGCTAAATCCAAACCCTTCATCCTCCTCGGTCTCATTCCTTAGCGGTGCTAATCCAATCCATTCCAATCCAATCAAACAGGCCGCGGCTGCTGCTGGTGCACTGTCAATCCCCGGTACTAATTCATATGAAAAGCGAAGCTCAATGGCTGCAATGAGGGAGATGATCTTTAGGATTGCGGCAATGCAGCCGATTCAGATAGACCCCGAAGCAGTGAAGCCGCCGAAGAGGAGGAATGTGAAGATTTCGAAAGATCCACAGAGCGTGGCAGCGAGGCATAGGAGGGAGAGGATCAGCGAGAGGATTAGGATCCTGCAGAGGCTTGTTCCGGGTGGGACTAAAATGGACACGGCTTCGATGCTAGACGAGGCTATACATTATGTGAAGTTCTTGAAGAAGCAGGTGCAGACTTTGGAAAGAGCTGGAGCTGATAGACCAGTTGGTGTTGGTTTCATGGGGCCTCAGTTGGGGAATGTGAATTACTCAGCTGGGTCTATGCAAATGCTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

250

Amino Acids

27.64

Weight (kDa)

9.81

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	171 - 212	3.5e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	173 - 216	5.9e-12	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008106)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19960
malus_domestica	MD10G1020800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0111871 RchiOBHm_Chr2g0111901
rosa_laevigata	RLG00000017927 RLG00000017933 RLG00000017934 RLG00000017935
rosa_multiflora	Rmu_co8359603.1_g000001 Rmu_co8457531.1_g000001 Rmu_sc0003656.1_g000003 Rmu_sc0006833.1_g000002 Rmu_sc0006833.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307790
rosa_rugosa	Rorug02G0176500 Rorug02G0176800 Rorug02G0176900
rosa_samantha	Rh2AG229200 Rh2BG241700 Rh2BG242000 Rh2CG233400 Rh2DG237000
rosa_wichuraiana	Rw2G017720 Rw2G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
Acc36I	ACCTGC	1 cut(s)	631
AccII	CGCG	1 cut(s)	326
AciI	CCGC	5 cut(s)	285, 324, 326, 419, 461
AclWI	GGATC	5 cut(s)	160, 488, 539, 544, 557
AfaI	GTAC	2 cut(s)	189, 358
AfiI	CCNNNNNNNGG	1 cut(s)	707
AgsI	TTSAA	1 cut(s)	634
AluBI	AGCT	5 cut(s)	32, 381, 662, 668, 728
AluI	AGCT	5 cut(s)	32, 381, 662, 668, 728
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	1 cut(s)	277
Alw44I	GTGCAC	1 cut(s)	339
AlwI	GGATC	5 cut(s)	160, 488, 539, 544, 557
AoxI	GGCC	2 cut(s)	321, 698
ApaLI	GTGCAC	1 cut(s)	339
ApeKI	GCWGC	6 cut(s)	88, 329, 332, 389, 427, 509
AspS9I	GGNCC	1 cut(s)	698
AsuC2I	CCSGG	2 cut(s)	354, 570
AsuHPI	GGTGA	2 cut(s)	50, 210
AsuII	TTCGAA	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BamHI	GGATCC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	6 cut(s)	100, 316, 319, 376, 439, 521
BccI	CCATC	1 cut(s)	54
BceAI	ACGGC	1 cut(s)	606
BcnI	CCSGG	2 cut(s)	354, 570
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	631
Bme1390I	CCNGG	2 cut(s)	354, 570
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	3 cut(s)	181, 551, 699
BmrFI	CCNGG	2 cut(s)	354, 570
BmsI	GCATC	2 cut(s)	75, 588
BpmI	CTGGAG	1 cut(s)	684
Bpu10I	CCTNAGC	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	488
BpuMI	CCSGG	2 cut(s)	354, 570
BsaBI	GATNNNNATC	2 cut(s)	45, 548
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	3 cut(s)	267, 324, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse1I	ACTGG	1 cut(s)	677
Bse3DI	GCAATG	3 cut(s)	239, 399, 429
Bse8I	GATNNNNATC	2 cut(s)	45, 548
BseDI	CCNNGG	3 cut(s)	267, 324, 352
BseGI	GGATG	2 cut(s)	49, 260
BseJI	GATNNNNATC	2 cut(s)	45, 548
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMI	GCAATG	3 cut(s)	239, 399, 429
BseMII	CTCAG	4 cut(s)	90, 123, 716, 738
BseNI	ACTGG	1 cut(s)	677
BseRI	GAGGAG	3 cut(s)	108, 256, 484
BseSI	GKGCMC	1 cut(s)	343
BseXI	GCAGC	6 cut(s)	100, 316, 319, 376, 439, 521
BseYI	CCCAGC	1 cut(s)	728
BsgI	GTGCAG	1 cut(s)	665
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	2 cut(s)	323, 700
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	354, 569
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	323, 700
Bso31I	GGTCTC	1 cut(s)	277
Bsp119I	TTCGAA	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	6 cut(s)	40, 152, 405, 493, 531, 549
BspACI	CCGC	5 cut(s)	285, 324, 326, 419, 461
BspANI	GGCC	2 cut(s)	323, 700
BspCNI	CTCAG	4 cut(s)	91, 124, 715, 737
BspFNI	CGCG	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	181, 551, 699
BspMAI	CTGCAG	1 cut(s)	558
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	5 cut(s)	160, 488, 539, 544, 557
BspT104I	TTCGAA	1 cut(s)	488
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	3 cut(s)	239, 399, 429
BsrI	ACTGG	1 cut(s)	677
BssECI	CCNNGG	3 cut(s)	267, 324, 352
BssMI	GATC	6 cut(s)	40, 152, 405, 493, 531, 549
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	488
BstDEI	CTNAG	6 cut(s)	99, 132, 281, 702, 724, 746
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	49, 260
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	6 cut(s)	43, 155, 408, 496, 534, 552
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	6 cut(s)	40, 152, 405, 493, 531, 549
BstMWI	GCNNNNNNNGC	4 cut(s)	241, 329, 332, 338
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	352, 568
BstSFI	CTRYAG	1 cut(s)	554
BstSLI	GKGCMC	1 cut(s)	343
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	6 cut(s)	100, 316, 319, 376, 439, 521
BstX2I	RGATCY	2 cut(s)	493, 549
BstYI	RGATCY	2 cut(s)	493, 549
BsuRI	GGCC	2 cut(s)	323, 700
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	49, 260
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	341, 459
BveI	ACCTGC	1 cut(s)	631
CciI	TCATGA	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	698
Cfr42I	CCGCGG	1 cut(s)	327
Csp6I	GTAC	2 cut(s)	188, 357
CviAII	CATG	6 cut(s)	13, 38, 64, 70, 199, 694
CviQI	GTAC	2 cut(s)	188, 357
DdeI	CTNAG	6 cut(s)	99, 132, 281, 702, 724, 746
DpnI	GATC	6 cut(s)	42, 154, 407, 495, 533, 551
DpnII	GATC	6 cut(s)	40, 152, 405, 493, 531, 549
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco31I	GGTCTC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	698
FaeI	CATG	6 cut(s)	16, 41, 67, 73, 202, 697
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	6 cut(s)	12, 37, 63, 69, 198, 693
FauNDI	CATATG	1 cut(s)	367
FokI	GGATG	2 cut(s)	36, 247
FspBI	CTAG	1 cut(s)	602
GsaI	CCCAGC	1 cut(s)	732
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	2 cut(s)	323, 700
HapII	CCGG	2 cut(s)	354, 569
Hin1II	CATG	6 cut(s)	16, 41, 67, 73, 202, 697
HinfI	GANTC	2 cut(s)	94, 433
HpaII	CCGG	2 cut(s)	354, 569
HphI	GGTGA	2 cut(s)	50, 210
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	2 cut(s)	133, 438
Hpy188III	TCNNGA	3 cut(s)	38, 98, 631
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4V	TGCA	7 cut(s)	88, 341, 392, 427, 556, 646, 739
HpyF10VI	GCNNNNNNNGC	4 cut(s)	241, 329, 332, 338
HpyF3I	CTNAG	6 cut(s)	99, 132, 281, 702, 724, 746
Hsp92II	CATG	6 cut(s)	16, 41, 67, 73, 202, 697
KspI	CCGCGG	1 cut(s)	327
Kzo9I	GATC	6 cut(s)	40, 152, 405, 493, 531, 549
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	6 cut(s)	100, 316, 319, 376, 439, 521
LweI	GCATC	2 cut(s)	75, 588
MaeI	CTAG	1 cut(s)	602
MalI	GATC	6 cut(s)	42, 154, 407, 495, 533, 551
MboI	GATC	6 cut(s)	40, 152, 405, 493, 531, 549
MboII	GAAGA	3 cut(s)	478, 493, 646
MflI	RGATCY	2 cut(s)	493, 549
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	3 cut(s)	159, 361, 718
MlyI	GAGTC	1 cut(s)	103
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	3 cut(s)	32, 326, 728
MspI	CCGG	2 cut(s)	354, 569
MspR9I	CCNGG	2 cut(s)	354, 570
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	4 cut(s)	241, 329, 332, 338
NciI	CCSGG	2 cut(s)	354, 570
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	6 cut(s)	40, 152, 405, 493, 531, 549
NlaIII	CATG	6 cut(s)	16, 41, 67, 73, 202, 697
NlaIV	GGNNCC	3 cut(s)	181, 551, 699
NspI	RCATGY	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	488
PagI	TCATGA	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	433
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	728
PspN4I	GGNNCC	3 cut(s)	181, 551, 699
PspPI	GGNCC	1 cut(s)	698
PstI	CTGCAG	1 cut(s)	558
PsuI	RGATCY	2 cut(s)	493, 549
PvuII	CAGCTG	2 cut(s)	32, 728
RsaI	GTAC	2 cut(s)	189, 358
RsaNI	GTAC	2 cut(s)	188, 357
RseI	CAYNNNNRTG	1 cut(s)	68
SacII	CCGCGG	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	18
Sau3AI	GATC	6 cut(s)	40, 152, 405, 493, 531, 549
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	2 cut(s)	354, 570
SduI	GDGCHC	1 cut(s)	343
SetI	ASST	6 cut(s)	34, 383, 645, 664, 670, 730
SfaNI	GCATC	2 cut(s)	75, 588
SfcI	CTRYAG	1 cut(s)	554
Sfr303I	CCGCGG	1 cut(s)	327
SfuI	TTCGAA	1 cut(s)	488
SgrBI	CCGCGG	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	159, 361, 718
SsiI	CCGC	5 cut(s)	285, 324, 326, 419, 461
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	2 cut(s)	352, 568
TaaI	ACNGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	488, 596
TaqII	GACCGA	1 cut(s)	259
TasI	AATT	3 cut(s)	159, 361, 718
TauI	GCSGC	4 cut(s)	326, 329, 422, 463
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	2 cut(s)	348, 459
TseI	GCWGC	6 cut(s)	88, 329, 332, 389, 427, 509
TspDTI	ATGAA	4 cut(s)	249, 354, 384, 682
TspRI	CASTG	2 cut(s)	348, 459
VneI	GTGCAC	1 cut(s)	339
XceI	RCATGY	1 cut(s)	16
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.