Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008106

Physical Location & Seq

Genomic Coordinates Forward (+)

23224187 .. 23230250

Gene Structure 6064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017933

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGACCATGAACTTGAGACAGGCTCAGCTATCTCTAAAAAGCTTTGGACTGCAATCGAAGAATCAAAGTTCGCCATTATTGTCTTCTCGCATTATTACTCCAGTTCAGAATGATGTAAAACACCAAACAAGAACTTTTGAGGAAGCCTTCAACAAGCATGAAAATGATTGCATACATGACACAGTAAAGGTGTTAGAGACCGAGTTCATCGAAAAAGTTGTAGACAAACTGTATAACAAACTAGTATGCAGTGGCTGCAACGGAAGGGTTGGTGATGGCCTCAACTGCTTGGATGCTAAATCTATCCAAGATGGTCAAGTTGAGTACAAGGAATATCCATTCTGGCGACGAAGATATTGTTCTTCCGATGTAAATGATGGGGCTCCTAGGTGTTGTAGCTGTGAAAGATTGAAGCCAAGGGGCACAACATATTATAAGCTCGATGATGGTCGAAAACTATGTCAGGAGTGTATAGAGTCCATTATCAATACTGATCATGGACGCCGATGCATTTGCCTTGAAGTACAAAAATTTTATAAGAAGTTAAATGTGAAAGTAGAGAAAATTCCAGTGCGGTTGGTCGGCAGACAAGTCATAATCGATGCCATGAAGGAGGAAAATGATGATTCTGGTCGCCAATTGCCGGTAATAAGAGCAGTCGGCTTGTTTGAAAAGAGTCTTACCAGCGCTATTATGGGGAGGCCGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

237

Amino Acids

26.96

Weight (kDa)

8.78

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008106)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19960
malus_domestica	MD10G1020800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0111871 RchiOBHm_Chr2g0111901
rosa_laevigata	RLG00000017927 RLG00000017933 RLG00000017934 RLG00000017935
rosa_multiflora	Rmu_co8359603.1_g000001 Rmu_co8457531.1_g000001 Rmu_sc0003656.1_g000003 Rmu_sc0006833.1_g000002 Rmu_sc0006833.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307790
rosa_rugosa	Rorug02G0176500 Rorug02G0176800 Rorug02G0176900
rosa_samantha	Rh2AG229200 Rh2BG241700 Rh2BG242000 Rh2CG233400 Rh2DG237000
rosa_wichuraiana	Rw2G017720 Rw2G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	435, 537
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	1 cut(s)	574
AcsI	RAATTY	2 cut(s)	530, 564
AcyI	GRCGYC	1 cut(s)	502
AfaI	GTAC	2 cut(s)	326, 525
AfeI	AGCGCT	1 cut(s)	688
AfiI	CCNNNNNNNGG	1 cut(s)	643
AgsI	TTSAA	4 cut(s)	151, 412, 521, 671
AhlI	ACTAGT	1 cut(s)	241
AluBI	AGCT	5 cut(s)	28, 42, 399, 439, 708
AluI	AGCT	5 cut(s)	28, 42, 399, 439, 708
Alw26I	GTCTC	2 cut(s)	10, 191
AlwNI	CAGNNNCTG	1 cut(s)	255
Aor51HI	AGCGCT	1 cut(s)	688
AoxI	GGCC	2 cut(s)	277, 701
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	2 cut(s)	530, 564
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
AspA2I	CCTAGG	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	689
AsuHPI	GGTGA	1 cut(s)	284
AvrII	CCTAGG	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	4 cut(s)	269, 305, 371, 440
BcgI	CGANNNNNNTGC	2 cut(s)	495, 529
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	2 cut(s)	10, 191
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	3 cut(s)	242, 387, 709
BfoI	RGCGCY	1 cut(s)	690
BisI	GCNGC	1 cut(s)	256
BlnI	CCTAGG	1 cut(s)	386
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	384
BmsI	GCATC	3 cut(s)	283, 497, 592
BpiI	GAAGAC	1 cut(s)	75
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpmI	CTGGAG	1 cut(s)	84
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	502
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse118I	RCCGGY	1 cut(s)	643
Bse1I	ACTGG	2 cut(s)	101, 569
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	386, 416
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	101, 569
BseSI	GKGCMC	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	242
BshFI	GGCC	2 cut(s)	279, 703
BshVI	ATCGAT	1 cut(s)	600
BsiSI	CCGG	1 cut(s)	644
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	2 cut(s)	10, 191
BsnI	GGCC	2 cut(s)	279, 703
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	385, 425
Bsp143I	GATC	1 cut(s)	493
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	574
BspANI	GGCC	2 cut(s)	279, 703
BspCNI	CTCAG	1 cut(s)	37
BspDI	ATCGAT	1 cut(s)	600
BspLI	GGNNCC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	643
BsrI	ACTGG	2 cut(s)	101, 569
BssAI	RCCGGY	1 cut(s)	643
BssECI	CCNNGG	2 cut(s)	386, 416
BssMI	GATC	1 cut(s)	493
BssNI	GRCGYC	1 cut(s)	502
BssT1I	CCWWGG	2 cut(s)	386, 416
Bst4CI	ACNGT	2 cut(s)	184, 231
BstACI	GRCGYC	1 cut(s)	502
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	2 cut(s)	10, 191
BstMBI	GATC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 285
BstSLI	GKGCMC	1 cut(s)	425
BstV1I	GCAGC	1 cut(s)	242
BstV2I	GAAGAC	1 cut(s)	75
Bsu15I	ATCGAT	1 cut(s)	600
BsuRI	GGCC	2 cut(s)	279, 703
BsuTUI	ATCGAT	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	2 cut(s)	256, 576
CaiI	CAGNNNCTG	1 cut(s)	255
CfoI	GCGC	1 cut(s)	689
Cfr10I	RCCGGY	1 cut(s)	643
ClaI	ATCGAT	1 cut(s)	600
CseI	GACGC	1 cut(s)	510
Csp6I	GTAC	2 cut(s)	325, 524
CviAII	CATG	5 cut(s)	7, 158, 176, 497, 607
CviQI	GTAC	2 cut(s)	325, 524
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
Eco130I	CCWWGG	2 cut(s)	386, 416
Eco24I	GRGCYC	1 cut(s)	385
Eco31I	GGTCTC	1 cut(s)	191
Eco47III	AGCGCT	1 cut(s)	688
EcoT14I	CCWWGG	2 cut(s)	386, 416
EcoT22I	ATGCAT	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	385
ErhI	CCWWGG	2 cut(s)	386, 416
FaeI	CATG	5 cut(s)	10, 161, 179, 500, 610
FatI	CATG	5 cut(s)	6, 157, 175, 496, 606
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	1 cut(s)	256
FspBI	CTAG	3 cut(s)	242, 387, 709
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	279, 703
HapII	CCGG	1 cut(s)	644
HgaI	GACGC	1 cut(s)	510
HhaI	GCGC	1 cut(s)	689
Hin1I	GRCGYC	1 cut(s)	502
Hin1II	CATG	5 cut(s)	10, 161, 179, 500, 610
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	4 cut(s)	61, 476, 626, 676
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	108, 367
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	3 cut(s)	157, 258, 604
HpyCH4III	ACNGT	2 cut(s)	184, 231
HpyCH4V	TGCA	5 cut(s)	52, 171, 249, 258, 510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 285
HpyF3I	CTNAG	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	502
Hsp92II	CATG	5 cut(s)	10, 161, 179, 500, 610
HspAI	GCGC	1 cut(s)	687
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	1 cut(s)	493
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	8 cut(s)	5, 114, 328, 449, 582, 615, 657, 697
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	3 cut(s)	283, 497, 592
MaeI	CTAG	3 cut(s)	242, 387, 709
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	4 cut(s)	70, 75, 354, 363
MfeI	CAATTG	1 cut(s)	638
MhlI	GDGCHC	2 cut(s)	385, 425
MluCI	AATT	3 cut(s)	530, 564, 638
MlyI	GAGTC	2 cut(s)	485, 685
MnlI	CCTC	4 cut(s)	133, 290, 607, 693
Mph1103I	ATGCAT	1 cut(s)	512
MseI	TTAA	1 cut(s)	545
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	1 cut(s)	644
MunI	CAATTG	1 cut(s)	638
MwoI	GCNNNNNNNGC	2 cut(s)	255, 285
NdeII	GATC	1 cut(s)	493
NlaIII	CATG	5 cut(s)	10, 161, 179, 500, 610
NlaIV	GGNNCC	1 cut(s)	384
NsiI	ATGCAT	1 cut(s)	512
PfeI	GAWTC	2 cut(s)	61, 626
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	2 cut(s)	484, 684
PpsI	GAGTC	2 cut(s)	484, 684
PsiI	TTATAA	2 cut(s)	435, 537
PspN4I	GGNNCC	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	255
RsaI	GTAC	2 cut(s)	326, 525
RsaNI	GTAC	2 cut(s)	325, 524
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	1 cut(s)	493
SchI	GAGTC	2 cut(s)	485, 685
SduI	GDGCHC	2 cut(s)	385, 425
SetI	ASST	7 cut(s)	30, 44, 192, 392, 401, 441, 710
SfaNI	GCATC	3 cut(s)	283, 497, 592
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SpeI	ACTAGT	1 cut(s)	241
Sse9I	AATT	3 cut(s)	530, 564, 638
SsiI	CCGC	1 cut(s)	574
SspMI	CTAG	3 cut(s)	242, 387, 709
StyI	CCWWGG	2 cut(s)	386, 416
TaaI	ACNGT	2 cut(s)	184, 231
TaqI	TCGA	5 cut(s)	56, 210, 441, 451, 600
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	3 cut(s)	530, 564, 638
TatI	WGTACW	2 cut(s)	324, 523
TfiI	GAWTC	2 cut(s)	61, 626
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	2 cut(s)	256, 576
TseI	GCWGC	1 cut(s)	255
TspDTI	ATGAA	4 cut(s)	23, 174, 196, 623
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	2 cut(s)	256, 576
XapI	RAATTY	2 cut(s)	530, 564
XcmI	CCANNNNNNNNNTGG	1 cut(s)	691
XmaJI	CCTAGG	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	3 cut(s)	242, 387, 709
Zsp2I	ATGCAT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.