Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008106

Physical Location & Seq

Genomic Coordinates Forward (+)

23096810 .. 23098438

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGCATCAAGCACCCAAAGAGCCTCTACGTCCATTCGTTTCGCTTCTTTCTGGAAATATGATGCATTTTTGAGCTTCAGAGGGGAAGAAACCCGCAAAAATTTTACAGACCATCTACATAAAGCATTGGTGGGGAAAAGAATCAAAGTTTTCAAGGATGACAAACTTGAGAGAGGCACAACTATCTCTTTAGAGCTCATGACTGCAATCGAAGAATCAAGGTTTGCCATCGTTGTCATATCACAAGATTACGCCAGTTCAAAATGGTGCTTATATGAACTTGTAAAGATTTTTAAATGCATGAAGGAGAGGGAGGCAATAATCCCAATTTTTTATAATGTGGATCCATCCGATGTAAAACACCAAACAGGAACTTTCGGAGATGCCTTTAATAAGCATGTCAAAGATGGTAAATATGACACAGAAAAGGTGCAAGGGTGGAAGAATGCTTTGACAACAGTTGGTCGCATATCTGGCTGGAATTTGGCACTATATCAGTCAGAGACCAAGTTTATCGGAGAAATTGTAGACTCACTGTATAAGAAACTGGTATGCGCTGGCTGCAACAGGAGGGTTGAAGATGGCCTCAACTGCTTGGATGCTCTTTGGCATCGAGCATGTCTTCTCTGCAAAGGTTGCAATCGTCCATTTACTGATCTACAGTTTTGGGAATGTGGGGATCAGCCTTACCATGAAAGCTGCTATGATCTACAATGTCATGTATGCAATGTTTGCAAGAAATCTATCCAAGATAATTCAGATGGCCAAGTTGAGTATATGGAACATCCATTCTGGCTACAAAGATATTGTCCCTCCCATGTAAAGGATGGGACTCCTTGGTGTTGTAGCTGTGAAAGATTGAAGCCAAGGGATATAACATATTATAAGCTTGATGATGGTCGAAAACTATGTCCGGAATGTAAAGAGTCTATTATCAATACTGATAGTGGACGCCGATCCATTTGCCTTGAAGTACGAAAATTTTATAAGAAATTAAATGTGAAAGTAGAGAAGATTCCAGTGCGGTTGGTCAGCAGTCAAGAAATAATCGATGTCTTGAAGGAGGCAAATGATGGTTCTGATCCCCATTTGCCGGTAATAAGAGCAGTCTGCTTGTGTGAAGAGCGTACTGTTACCAGCTCCATTATGAGGAGGCCGAGCCAGCTTTGCTGTGAAGTTAAAGAAATTTTAATCTGGTACGGCCTTCCTAGAATACTGACAGGGTCACTTCTAGCTCAACAGATGGTGAGTGCATGGCTAAGGCTTAGTCGTTGTCCAAATTTGAGCCCGGAGGTAGAAAAAGGTATCTGCCGATATTTTGCAAATAGGTGGTTGGACTACTCTTCTAATTCTGATTCATCTAAAAAGTGGTCTGAGTTTGAGAAGAAGCTTTGTAAATTTCGGAAACGTAAAATTGAACAAGACTGTGAAGCATTACTAACAGCTAAGGAAGCGGTGCGCAAGCATGGTCTAGGAATGACACTCAAAACAATTCGAAAGACAGGAAATTTTCCATCTGTAACGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

510

Amino Acids

58.77

Weight (kDa)

8.86

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	19 - 184	8.3e-51	TIR domain
TIR_2	PF13676	23 - 116	3.7e-13	TIR domain
LIM	PF00412	185 - 235	1.1e-06	LIM domain
DA1-like	PF12315	332 - 500	3.6e-27	Protein DA1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008106)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19960
malus_domestica	MD10G1020800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0111871 RchiOBHm_Chr2g0111901
rosa_laevigata	RLG00000017927 RLG00000017933 RLG00000017934 RLG00000017935
rosa_multiflora	Rmu_co8359603.1_g000001 Rmu_co8457531.1_g000001 Rmu_sc0003656.1_g000003 Rmu_sc0006833.1_g000002 Rmu_sc0006833.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307790
rosa_rugosa	Rorug02G0176500 Rorug02G0176800 Rorug02G0176900
rosa_samantha	Rh2AG229200 Rh2BG241700 Rh2BG242000 Rh2CG233400 Rh2DG237000
rosa_wichuraiana	Rw2G017720 Rw2G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	336, 885, 987
Acc16I	TGCGCA	1 cut(s)	1460
AccI	GTMKAC	1 cut(s)	528
AccIII	TCCGGA	1 cut(s)	913
AciI	CCGC	3 cut(s)	94, 1024, 1454
AclWI	GGATC	5 cut(s)	338, 351, 687, 951, 1076
AcoI	YGGCCR	1 cut(s)	763
AcsI	RAATTY	7 cut(s)	100, 481, 980, 1185, 1279, 1397, 1507
AcuI	CTGAAG	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	952
AfaI	GTAC	3 cut(s)	975, 1129, 1199
AfiI	CCNNNNNNNGG	3 cut(s)	823, 1093, 1149
AgsI	TTSAA	7 cut(s)	154, 261, 578, 862, 971, 1060, 1418
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	5 cut(s)	338, 351, 687, 951, 1076
Aor13HI	TCCGGA	1 cut(s)	913
AoxI	GGCC	4 cut(s)	583, 763, 1154, 1201
ApeKI	GCWGC	2 cut(s)	561, 699
ApoI	RAATTY	7 cut(s)	100, 481, 980, 1185, 1279, 1397, 1507
ArsI	GACNNNNNNTTYG	4 cut(s)	793, 825, 895, 927
AspLEI	GCGC	2 cut(s)	557, 1461
AsuC2I	CCSGG	1 cut(s)	1289
AsuHPI	GGTGA	1 cut(s)	1258
AsuII	TTCGAA	1 cut(s)	1495
BalI	TGGCCA	1 cut(s)	765
BamHI	GGATCC	1 cut(s)	343
BanII	GRGCYC	2 cut(s)	198, 1289
BbsI	GAAGAC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	548, 686
BceAI	ACGGC	1 cut(s)	1216
BcgI	CGANNNNNNTGC	2 cut(s)	945, 979
BcnI	CCSGG	1 cut(s)	1289
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	3 cut(s)	1209, 1232, 1472
BfmI	CTRYAG	1 cut(s)	659
BisI	GCNGC	2 cut(s)	562, 700
BlsI	GCNGC	2 cut(s)	563, 701
Bme1390I	CCNGG	1 cut(s)	1289
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	1289
BmsI	GCATC	5 cut(s)	14, 52, 373, 589, 619
BpiI	GAAGAC	1 cut(s)	614
Bpu10I	CCTNAGC	2 cut(s)	1259, 1446
Bpu14I	TTCGAA	1 cut(s)	1495
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	1289
Bsa29I	ATCGAT	1 cut(s)	1050
BsaHI	GRCGYC	1 cut(s)	952
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	836, 866
BsaWI	WCCGGW	1 cut(s)	913
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	3 cut(s)	823, 1093, 1149
Bse118I	RCCGGY	1 cut(s)	1093
Bse1I	ACTGG	3 cut(s)	255, 552, 1019
Bse3DI	GCAATG	1 cut(s)	733
BseAI	TCCGGA	1 cut(s)	913
BseCI	ATCGAT	1 cut(s)	1050
BseDI	CCNNGG	2 cut(s)	836, 866
BseGI	GGATG	5 cut(s)	163, 347, 604, 784, 832
BseLI	CCNNNNNNNGG	3 cut(s)	823, 1093, 1149
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	1 cut(s)	1365
BseNI	ACTGG	3 cut(s)	255, 552, 1019
BseRI	GAGGAG	1 cut(s)	1165
BseXI	GCAGC	2 cut(s)	548, 686
BshFI	GGCC	4 cut(s)	585, 765, 1156, 1203
BshVI	ATCGAT	1 cut(s)	1050
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	914, 1094, 1289
BslFI	GGGAC	2 cut(s)	795, 844
BslI	CCNNNNNNNGG	3 cut(s)	823, 1093, 1149
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	2 cut(s)	795, 844
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	4 cut(s)	585, 765, 1156, 1203
Bso31I	GGTCTC	1 cut(s)	497
Bsp119I	TTCGAA	1 cut(s)	1495
Bsp1286I	GDGCHC	2 cut(s)	198, 1289
Bsp13I	TCCGGA	1 cut(s)	913
Bsp143I	GATC	6 cut(s)	343, 655, 679, 706, 956, 1081
BspACI	CCGC	3 cut(s)	94, 1024, 1454
BspANI	GGCC	4 cut(s)	585, 765, 1156, 1203
BspCNI	CTCAG	1 cut(s)	1366
BspDI	ATCGAT	1 cut(s)	1050
BspEI	TCCGGA	1 cut(s)	913
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	345
BspPI	GGATC	5 cut(s)	338, 351, 687, 951, 1076
BspQI	GCTCTTC	1 cut(s)	1116
BspT104I	TTCGAA	1 cut(s)	1495
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	733
BsrFI	RCCGGY	1 cut(s)	1093
BsrI	ACTGG	3 cut(s)	255, 552, 1019
BssAI	RCCGGY	1 cut(s)	1093
BssECI	CCNNGG	2 cut(s)	836, 866
BssMI	GATC	6 cut(s)	343, 655, 679, 706, 956, 1081
BssNI	GRCGYC	1 cut(s)	952
BssT1I	CCWWGG	2 cut(s)	836, 866
Bst4CI	ACNGT	5 cut(s)	460, 537, 663, 1132, 1427
Bst6I	CTCTTC	2 cut(s)	1116, 1348
BstACI	GRCGYC	1 cut(s)	952
BstAPI	GCANNNNNTGC	2 cut(s)	636, 732
BstBI	TTCGAA	1 cut(s)	1495
BstC8I	GCNNGC	3 cut(s)	559, 1163, 1463
BstDEI	CTNAG	4 cut(s)	1259, 1265, 1374, 1446
BstF5I	GGATG	5 cut(s)	163, 347, 604, 784, 832
BstHHI	GCGC	2 cut(s)	557, 1461
BstKTI	GATC	6 cut(s)	346, 658, 682, 709, 959, 1084
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	6 cut(s)	343, 655, 679, 706, 956, 1081
BstMWI	GCNNNNNNNGC	8 cut(s)	474, 561, 591, 636, 732, 1162, 1167, 1451
BstNSI	RCATGY	2 cut(s)	401, 621
BstSCI	CCNGG	1 cut(s)	1287
BstSFI	CTRYAG	1 cut(s)	659
BstV1I	GCAGC	2 cut(s)	548, 686
BstV2I	GAAGAC	1 cut(s)	614
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	1050
BsuRI	GGCC	4 cut(s)	585, 765, 1156, 1203
BsuTUI	ATCGAT	1 cut(s)	1050
BtsCI	GGATG	5 cut(s)	163, 347, 604, 784, 832
BtsIMutI	CAGTG	3 cut(s)	533, 1026, 1525
Cac8I	GCNNGC	3 cut(s)	559, 1163, 1463
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	2 cut(s)	557, 1461
Cfr10I	RCCGGY	1 cut(s)	1093
ClaI	ATCGAT	1 cut(s)	1050
CseI	GACGC	1 cut(s)	960
Csp6I	GTAC	3 cut(s)	974, 1128, 1198
CviAII	CATG	9 cut(s)	199, 301, 398, 618, 692, 719, 818, 1254, 1466
CviQI	GTAC	3 cut(s)	974, 1128, 1198
DdeI	CTNAG	4 cut(s)	1259, 1265, 1374, 1446
DpnI	GATC	6 cut(s)	345, 657, 681, 708, 958, 1083
DpnII	GATC	6 cut(s)	343, 655, 679, 706, 956, 1081
DraI	TTTAAA	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	763
Eam1104I	CTCTTC	2 cut(s)	1116, 1348
EarI	CTCTTC	2 cut(s)	1116, 1348
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	836, 866
Eco24I	GRGCYC	2 cut(s)	198, 1289
Eco31I	GGTCTC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	836, 866
EcoT22I	ATGCAT	2 cut(s)	67, 302
EcoT38I	GRGCYC	2 cut(s)	198, 1289
ErhI	CCWWGG	2 cut(s)	836, 866
FaeI	CATG	9 cut(s)	202, 304, 401, 621, 695, 722, 821, 1257, 1469
FaqI	GGGAC	2 cut(s)	795, 844
FatI	CATG	9 cut(s)	198, 300, 397, 617, 691, 718, 817, 1253, 1465
FauI	CCCGC	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	562, 700
FokI	GGATG	5 cut(s)	170, 334, 611, 771, 839
FriOI	GRGCYC	2 cut(s)	198, 1289
Fsp4HI	GCNGC	2 cut(s)	562, 700
FspBI	CTAG	3 cut(s)	1209, 1232, 1472
FspI	TGCGCA	1 cut(s)	1460
GlaI	GCGC	2 cut(s)	556, 1460
GluI	GCNGC	2 cut(s)	562, 700
HaeIII	GGCC	4 cut(s)	585, 765, 1156, 1203
HapII	CCGG	3 cut(s)	914, 1094, 1289
HgaI	GACGC	1 cut(s)	960
HhaI	GCGC	2 cut(s)	557, 1461
Hin1I	GRCGYC	1 cut(s)	952
Hin1II	CATG	9 cut(s)	202, 304, 401, 621, 695, 722, 821, 1257, 1469
Hin6I	GCGC	2 cut(s)	555, 1459
HinP1I	GCGC	2 cut(s)	555, 1459
HindIII	AAGCTT	2 cut(s)	887, 1388
HinfI	GANTC	7 cut(s)	141, 215, 530, 832, 926, 1015, 1355
HpaII	CCGG	3 cut(s)	914, 1094, 1289
HphI	GGTGA	1 cut(s)	1258
Hpy166II	GTNNAC	2 cut(s)	529, 950
Hpy188III	TCNNGA	5 cut(s)	52, 199, 914, 1040, 1057
Hpy8I	GTNNAC	2 cut(s)	529, 950
HpyAV	CCTTC	3 cut(s)	298, 1054, 1214
HpyCH4III	ACNGT	5 cut(s)	460, 537, 663, 1132, 1427
HpyCH4IV	ACGT	2 cut(s)	29, 1408
HpyF10VI	GCNNNNNNNGC	8 cut(s)	474, 561, 591, 636, 732, 1162, 1167, 1451
HpyF3I	CTNAG	4 cut(s)	1259, 1265, 1374, 1446
HpySE526I	ACGT	2 cut(s)	29, 1408
Hsp92I	GRCGYC	1 cut(s)	952
Hsp92II	CATG	9 cut(s)	202, 304, 401, 621, 695, 722, 821, 1257, 1469
HspAI	GCGC	2 cut(s)	555, 1459
Kpn2I	TCCGGA	1 cut(s)	913
Kzo9I	GATC	6 cut(s)	343, 655, 679, 706, 956, 1081
LguI	GCTCTTC	1 cut(s)	1116
LmnI	GCTCC	1 cut(s)	1145
Lsp1109I	GCAGC	2 cut(s)	548, 686
LweI	GCATC	5 cut(s)	14, 52, 373, 589, 619
MaeI	CTAG	3 cut(s)	1209, 1232, 1472
MaeII	ACGT	2 cut(s)	29, 1408
MaeIII	GTNAC	3 cut(s)	1132, 1224, 1519
MalI	GATC	6 cut(s)	345, 657, 681, 708, 958, 1083
MboI	GATC	6 cut(s)	343, 655, 679, 706, 956, 1081
MboII	GAAGA	9 cut(s)	98, 224, 454, 590, 614, 1024, 1133, 1335, 1396
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	198, 1289
MlsI	TGGCCA	1 cut(s)	765
MluNI	TGGCCA	1 cut(s)	765
MlyI	GAGTC	3 cut(s)	524, 826, 935
MmeI	TCCRAC	1 cut(s)	1314
Mox20I	TGGCCA	1 cut(s)	765
Mph1103I	ATGCAT	2 cut(s)	67, 302
MroI	TCCGGA	1 cut(s)	913
MscI	TGGCCA	1 cut(s)	765
MseI	TTAA	5 cut(s)	294, 390, 995, 1179, 1190
Msp20I	TGGCCA	1 cut(s)	765
MspI	CCGG	3 cut(s)	914, 1094, 1289
MspR9I	CCNGG	1 cut(s)	1289
Mva1269I	GAATGC	1 cut(s)	451
MwoI	GCNNNNNNNGC	8 cut(s)	474, 561, 591, 636, 732, 1162, 1167, 1451
NciI	CCSGG	1 cut(s)	1289
NdeII	GATC	6 cut(s)	343, 655, 679, 706, 956, 1081
NlaIII	CATG	9 cut(s)	202, 304, 401, 621, 695, 722, 821, 1257, 1469
NlaIV	GGNNCC	1 cut(s)	345
NmeAIII	GCCGAG	1 cut(s)	1182
NmuCI	GTSAC	1 cut(s)	1224
NsbI	TGCGCA	1 cut(s)	1460
NsiI	ATGCAT	2 cut(s)	67, 302
NspI	RCATGY	2 cut(s)	401, 621
NspV	TTCGAA	1 cut(s)	1495
PagI	TCATGA	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	1116
PctI	GAATGC	1 cut(s)	451
PfeI	GAWTC	4 cut(s)	141, 215, 1015, 1355
PflFI	GACNNNGTC	1 cut(s)	1222
PkrI	GCNGC	2 cut(s)	563, 701
PleI	GAGTC	3 cut(s)	524, 826, 934
PpsI	GAGTC	3 cut(s)	524, 826, 934
PsiI	TTATAA	3 cut(s)	336, 885, 987
Psp124BI	GAGCTC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	343
PsyI	GACNNNGTC	1 cut(s)	1222
RsaI	GTAC	3 cut(s)	975, 1129, 1199
RsaNI	GTAC	3 cut(s)	974, 1128, 1198
SacI	GAGCTC	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	1116
SaqAI	TTAA	5 cut(s)	294, 390, 995, 1179, 1190
SatI	GCNGC	2 cut(s)	562, 700
Sau3AI	GATC	6 cut(s)	343, 655, 679, 706, 956, 1081
SchI	GAGTC	3 cut(s)	524, 826, 935
ScrFI	CCNGG	1 cut(s)	1289
SduI	GDGCHC	2 cut(s)	198, 1289
SfaNI	GCATC	5 cut(s)	14, 52, 373, 589, 619
SfcI	CTRYAG	1 cut(s)	659
SfuI	TTCGAA	1 cut(s)	1495
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SsiI	CCGC	3 cut(s)	94, 1024, 1454
SspMI	CTAG	3 cut(s)	1209, 1232, 1472
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	1287
StyI	CCWWGG	2 cut(s)	836, 866
TaaI	ACNGT	5 cut(s)	460, 537, 663, 1132, 1427
TaiI	ACGT	2 cut(s)	32, 1411
TaqI	TCGA	5 cut(s)	210, 613, 901, 1050, 1495
TfiI	GAWTC	4 cut(s)	141, 215, 1015, 1355
Tru1I	TTAA	5 cut(s)	294, 390, 995, 1179, 1190
Tru9I	TTAA	5 cut(s)	294, 390, 995, 1179, 1190
TscAI	CASTG	2 cut(s)	540, 1026
TseFI	GTSAC	1 cut(s)	1224
TseI	GCWGC	2 cut(s)	561, 699
Tsp45I	GTSAC	1 cut(s)	1224
TspDTI	ATGAA	4 cut(s)	291, 317, 708, 1347
TspRI	CASTG	2 cut(s)	540, 1026
Tth111I	GACNNNGTC	1 cut(s)	1222
XapI	RAATTY	7 cut(s)	100, 481, 980, 1185, 1279, 1397, 1507
XceI	RCATGY	2 cut(s)	401, 621
XcmI	CCANNNNNNNNNTGG	1 cut(s)	824
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	3 cut(s)	1209, 1232, 1472
Zsp2I	ATGCAT	2 cut(s)	67, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.