Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457531.1

Orthogroup ID

OG0008106

Physical Location & Seq

Genomic Coordinates Reverse (-)

736 .. 1685

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457531.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgatggcctcaactgcttggatgctctttggcatcgagcatgtcttctctgcaaaggctgcaatcgtccgtttactgatctacagttttgggaatgtgggaatcagccttaccatgaacgctgctatgagctacaatgtcagctgtgaaagattgaagccaagggacataacatattataagcttgatgatggtcgaaaactatgtccggaatgtaaagagtctattatcaatactgatagcggacgccgatccatttgccttgaagtacgaaaattttataagaaattaaatgtgaaagtagagaagattccagtgcggttggtcagcagtcaaggcataatcgatgtcttgaaggaggcaaacgatggttctgatccccaattgccggtaataagagctgtctgcttgtgtgaagagcgtactgttaccagcactatttgggggaggccgagccagctttgctcagttaaagaaattttaatctggtacggctttccaagagtactgacagggtcacttctagctcaacagatgatgagtgcatggctaaggcttaatcgttatccaaatttgagccctgaggttgaaaaaggtatctgccgatactttgaaaataggtggttggactactcttctaattctgattcatctataaattgctctgagtttgagaagaagctttgtaaatttcggaaacgcaaaattgaatcagactgtgaagcattactgacagcaaaggaagcggtgcgcaagcatggtctaggaatgacactaggaacaattcggaagacaggaaagtttccatctgtaacgcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

273

Amino Acids

31.04

Weight (kDa)

9.33

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008106)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19960
malus_domestica	MD10G1020800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0111871 RchiOBHm_Chr2g0111901
rosa_laevigata	RLG00000017927 RLG00000017933 RLG00000017934 RLG00000017935
rosa_multiflora	Rmu_co8359603.1_g000001 Rmu_co8457531.1_g000001 Rmu_sc0003656.1_g000003 Rmu_sc0006833.1_g000002 Rmu_sc0006833.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307790
rosa_rugosa	Rorug02G0176500 Rorug02G0176800 Rorug02G0176900
rosa_samantha	Rh2AG229200 Rh2BG241700 Rh2BG242000 Rh2CG233400 Rh2DG237000
rosa_wichuraiana	Rw2G017720 Rw2G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	180, 282
Acc16I	TGCGCA	1 cut(s)	752
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	3 cut(s)	243, 319, 746
AclWI	GGATC	2 cut(s)	246, 371
AcsI	RAATTY	4 cut(s)	275, 477, 571, 689
AcyI	GRCGYC	1 cut(s)	247
AfaI	GTAC	4 cut(s)	270, 424, 491, 507
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	6 cut(s)	157, 266, 355, 590, 614, 710
AluBI	AGCT	7 cut(s)	132, 144, 184, 401, 460, 527, 682
AluI	AGCT	7 cut(s)	132, 144, 184, 401, 460, 527, 682
AlwI	GGATC	2 cut(s)	246, 371
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	2 cut(s)	6, 449
ApeKI	GCWGC	2 cut(s)	59, 122
ApoI	RAATTY	4 cut(s)	275, 477, 571, 689
ArsI	GACNNNNNNTTYG	2 cut(s)	190, 222
AspLEI	GCGC	1 cut(s)	753
AxyI	CCTNAGG	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	581
BbsI	GAAGAC	2 cut(s)	37, 797
BbvI	GCAGC	2 cut(s)	46, 109
BccI	CCATC	3 cut(s)	185, 362, 814
BceAI	ACGGC	1 cut(s)	508
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BfaI	CTAG	3 cut(s)	524, 764, 776
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	2 cut(s)	60, 123
BlsI	GCNGC	2 cut(s)	61, 124
BmcAI	AGTACT	1 cut(s)	507
BmsI	GCATC	2 cut(s)	12, 42
BpiI	GAAGAC	2 cut(s)	37, 797
Bpu10I	CCTNAGC	1 cut(s)	551
Bsa29I	ATCGAT	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	314
Bse21I	CCTNAGG	1 cut(s)	582
BseAI	TCCGGA	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMII	CTCAG	3 cut(s)	480, 573, 657
BseNI	ACTGG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	46, 109
BshFI	GGCC	2 cut(s)	8, 451
BshVI	ATCGAT	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	209, 389
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	8, 451
Bsp1286I	GDGCHC	1 cut(s)	581
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	78, 251, 376
BspACI	CCGC	3 cut(s)	243, 319, 746
BspANI	GGCC	2 cut(s)	8, 451
BspCNI	CTCAG	3 cut(s)	479, 574, 658
BspDI	ATCGAT	1 cut(s)	345
BspEI	TCCGGA	1 cut(s)	208
BspPI	GGATC	2 cut(s)	246, 371
BspQI	GCTCTTC	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	3 cut(s)	78, 251, 376
BssNI	GRCGYC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	161
Bst4CI	ACNGT	3 cut(s)	86, 427, 719
Bst6I	CTCTTC	2 cut(s)	411, 640
BstACI	GRCGYC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	458, 755
BstDEI	CTNAG	4 cut(s)	466, 551, 582, 666
BstF5I	GGATG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	753
BstKTI	GATC	3 cut(s)	81, 254, 379
BstMBI	GATC	3 cut(s)	78, 251, 376
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 59, 336, 457, 462, 743
BstNSI	RCATGY	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	46, 109
BstV2I	GAAGAC	2 cut(s)	37, 797
Bsu15I	ATCGAT	1 cut(s)	345
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	8, 451
BsuTUI	ATCGAT	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	321, 817
Cac8I	GCNNGC	2 cut(s)	458, 755
CfoI	GCGC	1 cut(s)	753
Cfr10I	RCCGGY	1 cut(s)	388
ClaI	ATCGAT	1 cut(s)	345
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	4 cut(s)	269, 423, 490, 506
CviAII	CATG	4 cut(s)	41, 115, 546, 758
CviQI	GTAC	4 cut(s)	269, 423, 490, 506
DdeI	CTNAG	4 cut(s)	466, 551, 582, 666
DpnI	GATC	3 cut(s)	80, 253, 378
DpnII	GATC	3 cut(s)	78, 251, 376
Eam1104I	CTCTTC	2 cut(s)	411, 640
EarI	CTCTTC	2 cut(s)	411, 640
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	581
Eco81I	CCTNAGG	1 cut(s)	582
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	581
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	4 cut(s)	44, 118, 549, 761
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	4 cut(s)	40, 114, 545, 757
Fnu4HI	GCNGC	2 cut(s)	60, 123
FokI	GGATG	1 cut(s)	34
FriOI	GRGCYC	1 cut(s)	581
Fsp4HI	GCNGC	2 cut(s)	60, 123
FspBI	CTAG	3 cut(s)	524, 764, 776
FspI	TGCGCA	1 cut(s)	752
GlaI	GCGC	1 cut(s)	752
GluI	GCNGC	2 cut(s)	60, 123
HaeIII	GGCC	2 cut(s)	8, 451
HapII	CCGG	2 cut(s)	209, 389
HgaI	GACGC	1 cut(s)	255
HhaI	GCGC	1 cut(s)	753
Hin1I	GRCGYC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	44, 118, 549, 761
Hin6I	GCGC	1 cut(s)	751
HinP1I	GCGC	1 cut(s)	751
HindIII	AAGCTT	2 cut(s)	182, 680
HinfI	GANTC	5 cut(s)	102, 221, 310, 647, 710
HpaII	CCGG	2 cut(s)	209, 389
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	6 cut(s)	376, 646, 667, 696, 715, 789
Hpy188III	TCNNGA	2 cut(s)	209, 352
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	3 cut(s)	86, 427, 719
HpyCH4V	TGCA	3 cut(s)	53, 62, 545
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 59, 336, 457, 462, 743
HpyF3I	CTNAG	4 cut(s)	466, 551, 582, 666
Hsp92I	GRCGYC	1 cut(s)	247
Hsp92II	CATG	4 cut(s)	44, 118, 549, 761
HspAI	GCGC	1 cut(s)	751
Kpn2I	TCCGGA	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	78, 251, 376
LguI	GCTCTTC	1 cut(s)	411
LpnPI	CCDG	9 cut(s)	222, 327, 402, 445, 470, 472, 498, 594, 780
Lsp1109I	GCAGC	2 cut(s)	46, 109
LweI	GCATC	2 cut(s)	12, 42
MaeI	CTAG	3 cut(s)	524, 764, 776
MaeIII	GTNAC	3 cut(s)	427, 516, 811
MalI	GATC	3 cut(s)	80, 253, 378
MboI	GATC	3 cut(s)	78, 251, 376
MboII	GAAGA	6 cut(s)	37, 319, 428, 627, 688, 802
MfeI	CAATTG	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	581
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	606
MnlI	CCTC	4 cut(s)	19, 352, 441, 577
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	4 cut(s)	290, 471, 482, 558
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	2 cut(s)	209, 389
MunI	CAATTG	1 cut(s)	383
MwoI	GCNNNNNNNGC	6 cut(s)	14, 59, 336, 457, 462, 743
NdeII	GATC	3 cut(s)	78, 251, 376
NlaIII	CATG	4 cut(s)	44, 118, 549, 761
NmeAIII	GCCGAG	1 cut(s)	477
NmuCI	GTSAC	1 cut(s)	516
NsbI	TGCGCA	1 cut(s)	752
NspI	RCATGY	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	102, 310, 647, 710
PflFI	GACNNNGTC	1 cut(s)	514
PkrI	GCNGC	2 cut(s)	61, 124
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PsiI	TTATAA	2 cut(s)	180, 282
PsyI	GACNNNGTC	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	144
RsaI	GTAC	4 cut(s)	270, 424, 491, 507
RsaNI	GTAC	4 cut(s)	269, 423, 490, 506
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	290, 471, 482, 558
SatI	GCNGC	2 cut(s)	60, 123
Sau3AI	GATC	3 cut(s)	78, 251, 376
ScaI	AGTACT	1 cut(s)	507
SchI	GAGTC	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	581
SfaNI	GCATC	2 cut(s)	12, 42
SfcI	CTRYAG	1 cut(s)	82
SsiI	CCGC	3 cut(s)	243, 319, 746
SspMI	CTAG	3 cut(s)	524, 764, 776
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	3 cut(s)	86, 427, 719
TaqI	TCGA	3 cut(s)	36, 196, 345
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	4 cut(s)	102, 310, 647, 710
Tru1I	TTAA	4 cut(s)	290, 471, 482, 558
Tru9I	TTAA	4 cut(s)	290, 471, 482, 558
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	2 cut(s)	59, 122
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	2 cut(s)	131, 639
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	321
Tth111I	GACNNNGTC	1 cut(s)	514
XapI	RAATTY	4 cut(s)	275, 477, 571, 689
XceI	RCATGY	1 cut(s)	44
XspI	CTAG	3 cut(s)	524, 764, 776
ZrmI	AGTACT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.