Rw2G017720

DA1-related 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0008106
Physical Location & Seq
Forward (+)
22008168 .. 22009117
950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017720.1

Sequence Viewer

Length: 822 bp
ATGATGGCCTCAACTGCTTGGATGCTCTTTGGCATCGAGCATGTCTTCTCTGCAAAGGCTGCAATCGTCCGTTTACTGATCTACAGTTTTGGGAATGTGGGAATCAGCCTTACCATGAACGCTGCTATGAGCTACAATGTCAGCTGTGAAAGATTGAAGCCAAGGGACATAACATATTATAAGCTTGATGATGGTCGAAAACTATGTCCGGAATGTAAAGAGTCTATTATCAATACTGATAGCGGACGCCGATCCATTTGCCTTGAAGTACGAAAATTTTATAAGAAATTAAATGTGAAAGTAGAGAAGATTCCAGTGCGGTTGGTCAGCAGTCAAGACATAATCGATGTCTTGAAGGAGGCAAACGATGGTTCTGATCCCCAATTGCCGGTAATAAGAGCTGTCTGCTTGTGTGAAGAGCGTACTGTTACCAGCACTATTTGGGGGAGGCCGAGCCAGCTTTGCTCAGTTAAAGAAATTTTAATCTGGTACGGCTTTCCAAGAGTACTGACAGGGTCACTTCTAGCTCAACAGATGATGAGTGCATGGCTAAGGCTTAATCGTTATCCAAATTTGAGCCCTGAGGTTGAAAAAGGTATCTGCCGATACTTTGAAAATAGGTGGTTGGACTACTCTTCTAATTCTGATTCATCTATAAATTGCTCTGAGTTTGAGAAGAAGCTTTGTAAATTTCGGAAACGCAAAATTGAATCAGACTGTGAAGCATTACTGACAGCAAAGGAAGCGGTGCGCAAGCATGGTCTAGGAATGACACTAGGAACAATTCGGAAGACAGGAAAGTTTCCATCTGTAACGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM

Protein Analysis

273

Amino Acids

31.1

Weight (kDa)

9.27

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 97 - 264 2.6e-25 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 180, 282
Acc16I TGCGCA 1 cut(s) 752
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 3 cut(s) 243, 319, 746
AclWI GGATC 2 cut(s) 246, 371
AcsI RAATTY 4 cut(s) 275, 477, 571, 689
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 4 cut(s) 270, 424, 491, 507
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 6 cut(s) 157, 266, 355, 590, 614, 710
AluBI AGCT 7 cut(s) 132, 144, 184, 401, 460, 527, 682
AluI AGCT 7 cut(s) 132, 144, 184, 401, 460, 527, 682
AlwI GGATC 2 cut(s) 246, 371
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 2 cut(s) 6, 449
ApeKI GCWGC 2 cut(s) 59, 122
ApoI RAATTY 4 cut(s) 275, 477, 571, 689
ArsI GACNNNNNNTTYG 2 cut(s) 190, 222
AspLEI GCGC 1 cut(s) 753
AxyI CCTNAGG 1 cut(s) 582
BanII GRGCYC 1 cut(s) 581
BbsI GAAGAC 2 cut(s) 37, 797
BbvI GCAGC 2 cut(s) 46, 109
BccI CCATC 3 cut(s) 185, 362, 814
BceAI ACGGC 1 cut(s) 508
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BfaI CTAG 3 cut(s) 524, 764, 776
BfmI CTRYAG 1 cut(s) 82
BisI GCNGC 2 cut(s) 60, 123
BlsI GCNGC 2 cut(s) 61, 124
BmcAI AGTACT 1 cut(s) 507
BmsI GCATC 2 cut(s) 12, 42
BpiI GAAGAC 2 cut(s) 37, 797
Bpu10I CCTNAGC 1 cut(s) 551
Bsa29I ATCGAT 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 314
Bse21I CCTNAGG 1 cut(s) 582
BseAI TCCGGA 1 cut(s) 208
BseCI ATCGAT 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMII CTCAG 3 cut(s) 480, 573, 657
BseNI ACTGG 1 cut(s) 314
BseXI GCAGC 2 cut(s) 46, 109
BshFI GGCC 2 cut(s) 8, 451
BshVI ATCGAT 1 cut(s) 345
BsiSI CCGG 2 cut(s) 209, 389
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 388
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 2 cut(s) 8, 451
Bsp1286I GDGCHC 1 cut(s) 581
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 3 cut(s) 78, 251, 376
BspACI CCGC 3 cut(s) 243, 319, 746
BspANI GGCC 2 cut(s) 8, 451
BspCNI CTCAG 3 cut(s) 479, 574, 658
BspDI ATCGAT 1 cut(s) 345
BspEI TCCGGA 1 cut(s) 208
BspPI GGATC 2 cut(s) 246, 371
BspQI GCTCTTC 1 cut(s) 411
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 3 cut(s) 78, 251, 376
BssNI GRCGYC 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 161
Bst4CI ACNGT 3 cut(s) 86, 427, 719
Bst6I CTCTTC 2 cut(s) 411, 640
BstACI GRCGYC 1 cut(s) 247
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 458, 755
BstDEI CTNAG 4 cut(s) 466, 551, 582, 666
BstF5I GGATG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 753
BstKTI GATC 3 cut(s) 81, 254, 379
BstMBI GATC 3 cut(s) 78, 251, 376
BstMWI GCNNNNNNNGC 5 cut(s) 14, 59, 457, 462, 743
BstNSI RCATGY 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 46, 109
BstV2I GAAGAC 2 cut(s) 37, 797
Bsu15I ATCGAT 1 cut(s) 345
Bsu36I CCTNAGG 1 cut(s) 582
BsuRI GGCC 2 cut(s) 8, 451
BsuTUI ATCGAT 1 cut(s) 345
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 321, 817
Cac8I GCNNGC 2 cut(s) 458, 755
CfoI GCGC 1 cut(s) 753
Cfr10I RCCGGY 1 cut(s) 388
ClaI ATCGAT 1 cut(s) 345
CseI GACGC 1 cut(s) 255
Csp6I GTAC 4 cut(s) 269, 423, 490, 506
CviAII CATG 4 cut(s) 41, 115, 546, 758
CviQI GTAC 4 cut(s) 269, 423, 490, 506
DdeI CTNAG 4 cut(s) 466, 551, 582, 666
DpnI GATC 3 cut(s) 80, 253, 378
DpnII GATC 3 cut(s) 78, 251, 376
Eam1104I CTCTTC 2 cut(s) 411, 640
EarI CTCTTC 2 cut(s) 411, 640
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 581
Eco81I CCTNAGG 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 4 cut(s) 44, 118, 549, 761
FaqI GGGAC 1 cut(s) 179
FatI CATG 4 cut(s) 40, 114, 545, 757
Fnu4HI GCNGC 2 cut(s) 60, 123
FokI GGATG 1 cut(s) 34
FriOI GRGCYC 1 cut(s) 581
Fsp4HI GCNGC 2 cut(s) 60, 123
FspBI CTAG 3 cut(s) 524, 764, 776
FspI TGCGCA 1 cut(s) 752
GlaI GCGC 1 cut(s) 752
GluI GCNGC 2 cut(s) 60, 123
HaeIII GGCC 2 cut(s) 8, 451
HapII CCGG 2 cut(s) 209, 389
HgaI GACGC 1 cut(s) 255
HhaI GCGC 1 cut(s) 753
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 4 cut(s) 44, 118, 549, 761
Hin6I GCGC 1 cut(s) 751
HinP1I GCGC 1 cut(s) 751
HindIII AAGCTT 2 cut(s) 182, 680
HinfI GANTC 5 cut(s) 102, 221, 310, 647, 710
HpaII CCGG 2 cut(s) 209, 389
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 6 cut(s) 376, 646, 667, 696, 715, 789
Hpy188III TCNNGA 3 cut(s) 209, 335, 352
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 3 cut(s) 86, 427, 719
HpyCH4V TGCA 3 cut(s) 53, 62, 545
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 59, 457, 462, 743
HpyF3I CTNAG 4 cut(s) 466, 551, 582, 666
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 4 cut(s) 44, 118, 549, 761
HspAI GCGC 1 cut(s) 751
Kpn2I TCCGGA 1 cut(s) 208
Kzo9I GATC 3 cut(s) 78, 251, 376
LguI GCTCTTC 1 cut(s) 411
LpnPI CCDG 9 cut(s) 222, 327, 402, 445, 470, 472, 498, 594, 780
Lsp1109I GCAGC 2 cut(s) 46, 109
LweI GCATC 2 cut(s) 12, 42
MaeI CTAG 3 cut(s) 524, 764, 776
MaeIII GTNAC 3 cut(s) 427, 516, 811
MalI GATC 3 cut(s) 80, 253, 378
MboI GATC 3 cut(s) 78, 251, 376
MboII GAAGA 6 cut(s) 37, 319, 428, 627, 688, 802
MfeI CAATTG 1 cut(s) 383
MhlI GDGCHC 1 cut(s) 581
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 606
MnlI CCTC 4 cut(s) 19, 352, 441, 577
MroI TCCGGA 1 cut(s) 208
MseI TTAA 4 cut(s) 290, 471, 482, 558
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 2 cut(s) 209, 389
MunI CAATTG 1 cut(s) 383
MwoI GCNNNNNNNGC 5 cut(s) 14, 59, 457, 462, 743
NdeII GATC 3 cut(s) 78, 251, 376
NlaIII CATG 4 cut(s) 44, 118, 549, 761
NmeAIII GCCGAG 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 516
NsbI TGCGCA 1 cut(s) 752
NspI RCATGY 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 411
PfeI GAWTC 4 cut(s) 102, 310, 647, 710
PflFI GACNNNGTC 1 cut(s) 514
PkrI GCNGC 2 cut(s) 61, 124
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PsiI TTATAA 2 cut(s) 180, 282
PsyI GACNNNGTC 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 144
RsaI GTAC 4 cut(s) 270, 424, 491, 507
RsaNI GTAC 4 cut(s) 269, 423, 490, 506
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 4 cut(s) 290, 471, 482, 558
SatI GCNGC 2 cut(s) 60, 123
Sau3AI GATC 3 cut(s) 78, 251, 376
ScaI AGTACT 1 cut(s) 507
SchI GAGTC 1 cut(s) 230
SduI GDGCHC 1 cut(s) 581
SfaNI GCATC 2 cut(s) 12, 42
SfcI CTRYAG 1 cut(s) 82
SsiI CCGC 3 cut(s) 243, 319, 746
SspMI CTAG 3 cut(s) 524, 764, 776
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 3 cut(s) 86, 427, 719
TaqI TCGA 3 cut(s) 36, 196, 345
TatI WGTACW 1 cut(s) 505
TfiI GAWTC 4 cut(s) 102, 310, 647, 710
Tru1I TTAA 4 cut(s) 290, 471, 482, 558
Tru9I TTAA 4 cut(s) 290, 471, 482, 558
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 1 cut(s) 516
TseI GCWGC 2 cut(s) 59, 122
Tsp45I GTSAC 1 cut(s) 516
TspDTI ATGAA 2 cut(s) 131, 639
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 1 cut(s) 321
Tth111I GACNNNGTC 1 cut(s) 514
XapI RAATTY 4 cut(s) 275, 477, 571, 689
XceI RCATGY 1 cut(s) 44
XspI CTAG 3 cut(s) 524, 764, 776
ZrmI AGTACT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.