RchiOBHm_Chr2g0111901

DA1-related 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008106
Physical Location & Seq
Forward (+)
23635312 .. 23635575
264 bp
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UTR
Exon/CDS
Intron
PRQ48544

Sequence Viewer

Length: 165 bp
ATGTTGACAGGGTCACTTCTAGCTCAACAGATGATAAGTGCATGGCTAAGGCTTAAAGGTTATCCCAACTTTTGCCCTGAGCTTGAAAAAGGTATCTGCCAATATTTGGCACATAGGTGGTTGGAGACTTGGAGTATTCTAATTCTGATTCATCTAGAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM NB-ARC UIM

Protein Analysis

54

Amino Acids

6.34

Weight (kDa)

6.7

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 1 - 44 3.5e-15 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 86
AleI CACNNNNGTG 1 cut(s) 115
AluBI AGCT 2 cut(s) 23, 82
AluI AGCT 2 cut(s) 23, 82
Alw26I GTCTC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 20, 155
Bpu10I CCTNAGC 2 cut(s) 47, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 70
BstDEI CTNAG 2 cut(s) 47, 78
BstMAI GTCTC 1 cut(s) 119
CviAII CATG 1 cut(s) 42
CviJI RGCY 4 cut(s) 23, 46, 52, 82
CviKI_1 RGCY 4 cut(s) 23, 46, 52, 82
DdeI CTNAG 2 cut(s) 47, 78
FaeI CATG 1 cut(s) 45
FaiI YATR 2 cut(s) 43, 114
FatI CATG 1 cut(s) 41
FspBI CTAG 2 cut(s) 20, 155
Hin1II CATG 1 cut(s) 45
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 47, 78
Hsp92II CATG 1 cut(s) 45
LpnPI CCDG 1 cut(s) 90
MaeI CTAG 2 cut(s) 20, 155
MaeIII GTNAC 1 cut(s) 12
MluCI AATT 2 cut(s) 141, 160
MmeI TCCRAC 1 cut(s) 102
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 115
NlaIII CATG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 12
OliI CACNNNNGTG 1 cut(s) 115
PfeI GAWTC 1 cut(s) 148
PflFI GACNNNGTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 115
SaqAI TTAA 1 cut(s) 54
SetI ASST 5 cut(s) 25, 61, 84, 94, 119
SgeI CNNG 6 cut(s) 21, 32, 54, 89, 95, 141
SmiMI CAYNNNNRTG 1 cut(s) 115
Sse9I AATT 2 cut(s) 141, 160
SspI AATATT 1 cut(s) 104
SspMI CTAG 2 cut(s) 20, 155
TasI AATT 2 cut(s) 141, 160
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 140
Tth111I GACNNNGTC 1 cut(s) 10
Van91I CCANNNNNTGG 1 cut(s) 106
XbaI TCTAGA 1 cut(s) 154
XspI CTAG 2 cut(s) 20, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.