RchiOBHm_Chr2g0111871

DA1-related 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008106
Physical Location & Seq
Forward (+)
23617706 .. 23618362
657 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48542

Sequence Viewer

Length: 657 bp
ATGGTCAAGTTGAGTACAAGGAATATCCATTCTGGCGACGAAGATATTGTATCCTCCCATGTAGATGATGGGACTCCTAGGTGTTGTAGCTGTGAAAGATTGAAGCCAAGGGGCACAACATATTATAAGCTCGATGATGGTCGAAAACTATGCCAGGAGTGTATAGAGTCCATTATCAATACTGATCATGGACGCCGATCCATTTGCCTTGAAGTACAAAATTTTTATAAGAAGTTAAATGTGAAAGTAGAGAAAATTCCAGTGCGGTTGGTCGGCAGACAAGTCATAATCGATGCCATGAAGGAGGGAAATGATGATTCTGATCGCCAATTGCCGGTAATAAGAGCAGTCGGGTTGTTTGAAAAGAGTCTTACCAGCGCTTTTATGGGGAGGCCAAGCCAGCTTTGCTATGAAGTTAAAGAAATTTTAATCTGGTACGGCCTTCCTAGAATATTGACTGGGTCACTTCTAGCTCAACAGATGATGAGGGCATGGCTAAGGCTAAATAGCCTAAATTGCTGTCCGAATATGAGCCCTGAGGTTGAAAAAGGTATCTGCGGATATTTTGCACATAGGTGGTTGGAGTACTCTTCTAGTTCCTATTCATCTAAAAAATTGTCTGAGTTTGAGGAGAAGCTTTGTAGGAAACGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM

Protein Analysis

218

Amino Acids

25.05

Weight (kDa)

8.84

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 79 - 204 1.1e-22 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 126, 228
AciI CCGC 2 cut(s) 265, 558
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 3 cut(s) 220, 255, 423
AcyI GRCGYC 1 cut(s) 193
AfaI GTAC 4 cut(s) 16, 216, 437, 587
AfeI AGCGCT 1 cut(s) 379
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 4 cut(s) 103, 212, 362, 545
AjnI CCWGG 1 cut(s) 153
AleI CACNNNNGTG 1 cut(s) 574
AluBI AGCT 5 cut(s) 90, 130, 403, 473, 637
AluI AGCT 5 cut(s) 90, 130, 403, 473, 637
AlwI GGATC 1 cut(s) 192
Aor51HI AGCGCT 1 cut(s) 379
AoxI GGCC 2 cut(s) 392, 439
ApoI RAATTY 3 cut(s) 220, 255, 423
AspA2I CCTAGG 1 cut(s) 77
AspLEI GCGC 1 cut(s) 380
AvrII CCTAGG 1 cut(s) 77
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 536
BccI CCATC 2 cut(s) 62, 131
BceAI ACGGC 1 cut(s) 454
BcgI CGANNNNNNTGC 4 cut(s) 132, 166, 186, 220
BciT130I CCWGG 1 cut(s) 155
BciVI GTATCC 1 cut(s) 61
BclI TGATCA 1 cut(s) 184
BfaI CTAG 4 cut(s) 78, 447, 470, 594
BfoI RGCGCY 1 cut(s) 381
BfuI GTATCC 1 cut(s) 61
BlnI CCTAGG 1 cut(s) 77
BmcAI AGTACT 1 cut(s) 587
Bme1390I CCNGG 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 155
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 1 cut(s) 283
BmuI ACTGGG 1 cut(s) 468
Bpu10I CCTNAGC 1 cut(s) 497
Bsa29I ATCGAT 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 2 cut(s) 260, 463
Bse21I CCTNAGG 1 cut(s) 537
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 1 cut(s) 155
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 77, 107
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 2 cut(s) 528, 612
BseNI ACTGG 2 cut(s) 260, 463
BseRI GAGGAG 1 cut(s) 644
BseSI GKGCMC 1 cut(s) 116
BshFI GGCC 2 cut(s) 394, 441
BshVI ATCGAT 1 cut(s) 291
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 2 cut(s) 394, 441
Bsp1286I GDGCHC 2 cut(s) 116, 536
Bsp143I GATC 3 cut(s) 184, 197, 322
BspACI CCGC 2 cut(s) 265, 558
BspANI GGCC 2 cut(s) 394, 441
BspCNI CTCAG 2 cut(s) 529, 613
BspDI ATCGAT 1 cut(s) 291
BspPI GGATC 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 2 cut(s) 260, 463
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 2 cut(s) 77, 107
BssMI GATC 3 cut(s) 184, 197, 322
BssNI GRCGYC 1 cut(s) 193
BssT1I CCWWGG 2 cut(s) 77, 107
Bst2UI CCWGG 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 595
BstACI GRCGYC 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 3 cut(s) 497, 537, 621
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 3 cut(s) 187, 200, 325
BstMBI GATC 3 cut(s) 184, 197, 322
BstMWI GCNNNNNNNGC 3 cut(s) 400, 405, 516
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 116
Bsu15I ATCGAT 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 537
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 2 cut(s) 394, 441
BsuTUI ATCGAT 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 401
CfoI GCGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 334
ClaI ATCGAT 1 cut(s) 291
CseI GACGC 1 cut(s) 201
Csp6I GTAC 4 cut(s) 15, 215, 436, 586
CviAII CATG 4 cut(s) 59, 188, 298, 492
CviQI GTAC 4 cut(s) 15, 215, 436, 586
DdeI CTNAG 3 cut(s) 497, 537, 621
DpnI GATC 3 cut(s) 186, 199, 324
DpnII GATC 3 cut(s) 184, 197, 322
Eam1104I CTCTTC 1 cut(s) 595
EarI CTCTTC 1 cut(s) 595
Eco130I CCWWGG 2 cut(s) 77, 107
Eco24I GRGCYC 1 cut(s) 536
Eco47III AGCGCT 1 cut(s) 379
Eco81I CCTNAGG 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 2 cut(s) 77, 107
EcoT38I GRGCYC 1 cut(s) 536
ErhI CCWWGG 2 cut(s) 77, 107
FaeI CATG 4 cut(s) 62, 191, 301, 495
FaqI GGGAC 1 cut(s) 85
FatI CATG 4 cut(s) 58, 187, 297, 491
FbaI TGATCA 1 cut(s) 184
FriOI GRGCYC 1 cut(s) 536
FspBI CTAG 4 cut(s) 78, 447, 470, 594
GlaI GCGC 1 cut(s) 379
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 2 cut(s) 394, 441
HapII CCGG 1 cut(s) 335
HgaI GACGC 1 cut(s) 201
HhaI GCGC 1 cut(s) 380
Hin1I GRCGYC 1 cut(s) 193
Hin1II CATG 4 cut(s) 62, 191, 301, 495
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 4 cut(s) 73, 167, 317, 367
HpaII CCGG 1 cut(s) 335
Hpy188I TCNGA 3 cut(s) 322, 525, 622
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 295, 452
HpyCH4V TGCA 1 cut(s) 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 400, 405, 516
HpyF3I CTNAG 3 cut(s) 497, 537, 621
Hsp92I GRCGYC 1 cut(s) 193
Hsp92II CATG 4 cut(s) 62, 191, 301, 495
HspAI GCGC 1 cut(s) 378
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 3 cut(s) 184, 197, 322
LweI GCATC 1 cut(s) 283
MaeI CTAG 4 cut(s) 78, 447, 470, 594
MaeIII GTNAC 1 cut(s) 462
MalI GATC 3 cut(s) 186, 199, 324
MboI GATC 3 cut(s) 184, 197, 322
MboII GAAGA 2 cut(s) 53, 582
MfeI CAATTG 1 cut(s) 329
MhlI GDGCHC 2 cut(s) 116, 536
MluCI AATT 6 cut(s) 220, 255, 329, 423, 514, 614
MlyI GAGTC 3 cut(s) 67, 176, 376
MmeI TCCRAC 1 cut(s) 561
MnlI CCTC 6 cut(s) 64, 298, 384, 480, 532, 622
MseI TTAA 3 cut(s) 236, 417, 428
MslI CAYNNNNRTG 2 cut(s) 63, 574
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 155
MunI CAATTG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 3 cut(s) 400, 405, 516
NdeII GATC 3 cut(s) 184, 197, 322
NlaIII CATG 4 cut(s) 62, 191, 301, 495
NmuCI GTSAC 1 cut(s) 462
OliI CACNNNNGTG 1 cut(s) 574
PfeI GAWTC 1 cut(s) 317
PflFI GACNNNGTC 1 cut(s) 460
PleI GAGTC 3 cut(s) 67, 175, 375
PpsI GAGTC 3 cut(s) 67, 175, 375
PsiI TTATAA 2 cut(s) 126, 228
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PsyI GACNNNGTC 1 cut(s) 460
RsaI GTAC 4 cut(s) 16, 216, 437, 587
RsaNI GTAC 4 cut(s) 15, 215, 436, 586
RseI CAYNNNNRTG 2 cut(s) 63, 574
SaqAI TTAA 3 cut(s) 236, 417, 428
Sau3AI GATC 3 cut(s) 184, 197, 322
ScaI AGTACT 1 cut(s) 587
SchI GAGTC 3 cut(s) 67, 176, 376
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 2 cut(s) 116, 536
SetI ASST 9 cut(s) 83, 92, 132, 405, 475, 543, 553, 578, 639
SfaNI GCATC 1 cut(s) 283
SmiMI CAYNNNNRTG 2 cut(s) 63, 574
Sse9I AATT 6 cut(s) 220, 255, 329, 423, 514, 614
SsiI CCGC 2 cut(s) 265, 558
SspI AATATT 1 cut(s) 453
SspMI CTAG 4 cut(s) 78, 447, 470, 594
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 2 cut(s) 77, 107
TaqI TCGA 3 cut(s) 132, 142, 291
TasI AATT 6 cut(s) 220, 255, 329, 423, 514, 614
TatI WGTACW 3 cut(s) 14, 214, 585
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 3 cut(s) 236, 417, 428
Tru9I TTAA 3 cut(s) 236, 417, 428
TscAI CASTG 1 cut(s) 267
TseFI GTSAC 1 cut(s) 462
Tsp45I GTSAC 1 cut(s) 462
TspDTI ATGAA 3 cut(s) 314, 426, 594
TspRI CASTG 1 cut(s) 267
Tth111I GACNNNGTC 1 cut(s) 460
XapI RAATTY 3 cut(s) 220, 255, 423
XcmI CCANNNNNNNNNTGG 2 cut(s) 65, 382
XmaJI CCTAGG 1 cut(s) 77
XspI CTAG 4 cut(s) 78, 447, 470, 594
ZrmI AGTACT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.