Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003656.1

Orthogroup ID

OG0008106

Physical Location & Seq

Genomic Coordinates Reverse (-)

9852 .. 10199

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003656.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgaagaagggaaatgatggttctgatcgccaattgccggtaataagaacaatatgcttgtttgaagagcatactgttaccagtgttattacagggaggtcacttctagctcaacagatgatgagggcatggctaaggcttaattgctgttcgaatatgagcccaaaggttgaaaaaggtatctgccgatattttgcagataggtggttggagtattctatttccgattcatctaaaaaattgtctgtgtttgagaagaagctttgtaggaaacgggaaactgagttagattgtgaagcattactgacagctaagaaagctgtgtacaacagtgcaagcatggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

115

Amino Acids

13.19

Weight (kDa)

9.25

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008106)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19960
malus_domestica	MD10G1020800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0111871 RchiOBHm_Chr2g0111901
rosa_laevigata	RLG00000017927 RLG00000017933 RLG00000017934 RLG00000017935
rosa_multiflora	Rmu_co8359603.1_g000001 Rmu_co8457531.1_g000001 Rmu_sc0003656.1_g000003 Rmu_sc0006833.1_g000002 Rmu_sc0006833.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307790
rosa_rugosa	Rorug02G0176500 Rorug02G0176800 Rorug02G0176900
rosa_samantha	Rh2AG229200 Rh2BG241700 Rh2BG242000 Rh2CG233400 Rh2DG237000
rosa_wichuraiana	Rw2G017720 Rw2G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	65, 173
AluBI	AGCT	4 cut(s)	110, 262, 311, 320
AluI	AGCT	4 cut(s)	110, 262, 311, 320
AsuII	TTCGAA	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	164
BccI	CCATC	1 cut(s)	11
BfaI	CTAG	2 cut(s)	107, 346
Bpu10I	CCTNAGC	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	274
BspQI	GCTCTTC	1 cut(s)	60
BspT104I	TTCGAA	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	37
BssMI	GATC	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	76, 332
Bst6I	CTCTTC	1 cut(s)	60
BstAUI	TGTACA	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	3 cut(s)	134, 282, 312
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BtsIMutI	CAGTG	2 cut(s)	88, 337
Cac8I	GCNNGC	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	129, 340
CviJI	RGCY	7 cut(s)	110, 133, 139, 162, 262, 311, 320
CviKI_1	RGCY	7 cut(s)	110, 133, 139, 162, 262, 311, 320
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	3 cut(s)	134, 282, 312
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	164
FaeI	CATG	2 cut(s)	132, 343
FaiI	YATR	5 cut(s)	55, 72, 130, 158, 341
FatI	CATG	2 cut(s)	128, 339
FriOI	GRGCYC	1 cut(s)	164
FspBI	CTAG	2 cut(s)	107, 346
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	2 cut(s)	132, 343
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	25, 226
Hpy8I	GTNNAC	1 cut(s)	325
HpyCH4III	ACNGT	2 cut(s)	76, 332
HpyCH4V	TGCA	2 cut(s)	197, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	3 cut(s)	134, 282, 312
Hsp92II	CATG	2 cut(s)	132, 343
Kzo9I	GATC	1 cut(s)	25
LguI	GCTCTTC	1 cut(s)	60
LpnPI	CCDG	3 cut(s)	51, 78, 94
MaeI	CTAG	2 cut(s)	107, 346
MaeIII	GTNAC	2 cut(s)	76, 99
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	3 cut(s)	16, 77, 268
MfeI	CAATTG	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	3 cut(s)	32, 142, 239
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	2 cut(s)	90, 117
MseI	TTAA	1 cut(s)	141
MspI	CCGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	132, 343
NmuCI	GTSAC	1 cut(s)	99
NspV	TTCGAA	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	227
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	8 cut(s)	101, 112, 171, 181, 206, 264, 313, 322
SfuI	TTCGAA	1 cut(s)	152
SgeI	CNNG	7 cut(s)	50, 70, 93, 105, 119, 141, 287
Sse9I	AATT	3 cut(s)	32, 142, 239
SspMI	CTAG	2 cut(s)	107, 346
TaaI	ACNGT	2 cut(s)	76, 332
TaqI	TCGA	1 cut(s)	152
TasI	AATT	3 cut(s)	32, 142, 239
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	2 cut(s)	88, 337
TseFI	GTSAC	1 cut(s)	99
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	2 cut(s)	17, 219
TspRI	CASTG	2 cut(s)	88, 337
XspI	CTAG	2 cut(s)	107, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.