Rroxscaffold_4G00307790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008106
Physical Location & Seq
Forward (+)
29274642 .. 29286166
11525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307790.1

Sequence Viewer

Length: 279 bp
ATGGCTGCATCCATACATAGTTTGATACCTATCAGAAACGCCACGGGTTTGCGGATTTTTCCGAATCCGGTGAGAGCTCCGTTCAACGGTTTGATTGGAGGAGGGGCTTGGGATGGACCGGCTGTTGTGGTGGTGGGTGAACCCAGTACAGTGTGGAGCCCACCCAAATCAGTTGGGCAAAATGTTGGGCAAGAATCAGTCATTGAACTGCCCAGGCAGGTGGTCCCCACTCGAGTCCCACCAATTGGTCAGACAATTAATAGGCGGTGCATTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.73

Weight (kDa)

10.56

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 208
Acc36I ACCTGC 1 cut(s) 208
AccB7I CCANNNNNTGG 1 cut(s) 245
AciI CCGC 2 cut(s) 52, 265
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 2 cut(s) 86, 245
AgsI TTSAA 2 cut(s) 85, 206
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw21I GWGCWC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 5
AseI ATTAAT 1 cut(s) 258
AspS9I GGNCC 2 cut(s) 116, 223
AsuHPI GGTGA 2 cut(s) 82, 149
AvaI CYCGRG 1 cut(s) 231
AvaII GGWCC 2 cut(s) 116, 223
BanII GRGCYC 2 cut(s) 79, 161
Bbv12I GWGCWC 1 cut(s) 79
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 214
BfuAI ACCTGC 1 cut(s) 208
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 2 cut(s) 116, 223
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 2 cut(s) 116, 223
BmiI GGNNCC 2 cut(s) 158, 225
BmrFI CCNGG 1 cut(s) 214
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 17
BmuI ACTGGG 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 42, 212
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 245
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 2 cut(s) 42, 212
BseGI GGATG 2 cut(s) 8, 118
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 2 cut(s) 86, 245
BseNI ACTGG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 2 cut(s) 68, 119
BslFI GGGAC 2 cut(s) 209, 221
BslI CCNNNNNNNGG 2 cut(s) 86, 245
BsmFI GGGAC 2 cut(s) 209, 221
BsoBI CYCGRG 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 79, 161
BspACI CCGC 2 cut(s) 52, 265
BspLI GGNNCC 2 cut(s) 158, 225
BspMI ACCTGC 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 144
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 42, 212
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 89, 151
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 2 cut(s) 8, 118
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 42
BtsCI GGATG 2 cut(s) 8, 118
BtsIMutI CAGTG 1 cut(s) 156
BveI ACCTGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 2 cut(s) 116, 223
Csp6I GTAC 1 cut(s) 147
CviJI RGCY 5 cut(s) 5, 77, 107, 122, 159
CviKI_1 RGCY 5 cut(s) 5, 77, 107, 122, 159
CviQI GTAC 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 77
Eco24I GRGCYC 2 cut(s) 79, 161
Eco47I GGWCC 2 cut(s) 116, 223
Eco53kI GAGCTC 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 212
EcoT38I GRGCYC 2 cut(s) 79, 161
FaiI YATR 2 cut(s) 14, 18
FaqI GGGAC 2 cut(s) 209, 221
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 2 cut(s) 79, 161
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HapII CCGG 2 cut(s) 68, 119
HinfI GANTC 3 cut(s) 64, 194, 234
HpaII CCGG 2 cut(s) 68, 119
HphI GGTGA 2 cut(s) 82, 149
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 3 cut(s) 35, 63, 252
Hpy8I GTNNAC 1 cut(s) 140
HpyCH4III ACNGT 2 cut(s) 89, 151
HpyCH4V TGCA 2 cut(s) 8, 270
LmnI GCTCC 2 cut(s) 82, 156
LpnPI CCDG 6 cut(s) 81, 132, 157, 199, 203, 226
LweI GCATC 1 cut(s) 17
MfeI CAATTG 1 cut(s) 243
MhlI GDGCHC 2 cut(s) 79, 161
MluCI AATT 2 cut(s) 243, 255
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 2 cut(s) 92, 95
MseI TTAA 1 cut(s) 258
MspI CCGG 2 cut(s) 68, 119
MspR9I CCNGG 1 cut(s) 214
MunI CAATTG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 214
NlaIV GGNNCC 2 cut(s) 158, 225
PaeR7I CTCGAG 1 cut(s) 231
PaqCI CACCTGC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 64, 194
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 2 cut(s) 158, 225
PspPI GGNCC 2 cut(s) 116, 223
PspXI VCTCGAGB 1 cut(s) 231
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SacI GAGCTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 116, 223
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 214
SduI GDGCHC 2 cut(s) 79, 161
SetI ASST 3 cut(s) 31, 79, 222
SfaNI GCATC 1 cut(s) 17
Sfr274I CTCGAG 1 cut(s) 231
SinI GGWCC 2 cut(s) 116, 223
SlaI CTCGAG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 2 cut(s) 243, 255
SsiI CCGC 2 cut(s) 52, 265
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 212
TaaI ACNGT 2 cut(s) 89, 151
TaqI TCGA 1 cut(s) 232
TasI AATT 2 cut(s) 243, 255
TatI WGTACW 1 cut(s) 146
TfiI GAWTC 2 cut(s) 64, 194
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 156
TseI GCWGC 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 1 cut(s) 156
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 116, 223
VspI ATTAAT 1 cut(s) 258
XhoI CTCGAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.