Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006833.1

Orthogroup ID

OG0008106

Physical Location & Seq

Genomic Coordinates Reverse (-)

15598 .. 17310

Gene Structure 1713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006833.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

atggcatcaaatacccaaagagcctctacgtccattcctttagcttcttcatggaaatatgatgtgtttttgagttttagggggaaagaaacccgcaaaaattttacaggtcatctatataaagcattgaaggggaaaagaatcagagttttcaaggatgaccgtgaacttgagacaggctcagctatctctgaagagctctggactgcaatcgaagaatcaaagttcgccattattgtcttctcgcaagattacgccagttcagaatggtgcttaaatgagcttgtaaaaattgttgaatgcatgggagagagggagacaattatccccattttttataatgtggatatatccgatgtaaaacaccaaacaggaacttttgaagaagccttcaacaagcacgaaaatgatggtatacatgacacagtaaaggtgcaagggtggaagactactttgacaacagtttgtgggagagccggccatgttttggaagcatatcagtcagagaccgagttcatcgaaaaagttgtagacaaactgtataacaaactggtatgcgctggctgcaacggaagggctggtgatggcctcaactgcttgggtgctgtttggcatcgagcatgtcttctgactcttctctgcaaaggttgcaaccgtccgtttactgatctagagattcgggaatgtggggatcagcagccttaccatgaacgctgctatgagctagaatatcttgtatgcaatgtttgcaagaaatctatcgaagatggtcaagttgagtacaaggaatatccattctggcgacgaagatattgttcctcccatgaaaatgatgggactcctaggtgttgtagctgtgagagattgaagccaaggggcacaacatattataagcttgatgatggtcgaaaactatgtcaggagtgtaaagagtccattatcaatactggtcaaggacaccggtccatttgccttgaagtacaaaaattttataagaagttaaatgtgaaagtagagaaacttccagtgcggttggtcggcagacaagtcataatcgatgccatgaatgagggaaatgatgattctgatcgccaattgccggtaataagagcagtcggcttgtttgaaaagagtcttaccagcgctattatggggaggccgagccagctttgctgtgaagttaaagaaattttaatctggtactgccttcctagaatattgactgggtcatgctgtgaagttaaagaaattttaatctggtacggccttcctagaatattgactgggtcacttctagctcaacagatgatgagggcatggctaaggcttaattgctgtccgaatatgagccctgaggttgaaaaaggtatcagccgatattttgcgcataggtggttggagaactcttctagttcctattcatctaaattgtctgagtttgaggaaaagctttgtaggaaacgccaaactgagttaggttgtgaagcattactgacagctaagaaagctgtgtgcaagcatggtctaggaatgacacttgaaacaatccgaaatacaggaaagtttccattgtcacgcactgaaataaacagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

531

Amino Acids

60.82

Weight (kDa)

8.37

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008106)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19960
malus_domestica	MD10G1020800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0111871 RchiOBHm_Chr2g0111901
rosa_laevigata	RLG00000017927 RLG00000017933 RLG00000017934 RLG00000017935
rosa_multiflora	Rmu_co8359603.1_g000001 Rmu_co8457531.1_g000001 Rmu_sc0003656.1_g000003 Rmu_sc0006833.1_g000002 Rmu_sc0006833.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307790
rosa_rugosa	Rorug02G0176500 Rorug02G0176800 Rorug02G0176900
rosa_samantha	Rh2AG229200 Rh2BG241700 Rh2BG242000 Rh2CG233400 Rh2DG237000
rosa_wichuraiana	Rw2G017720 Rw2G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	339, 891, 993
Acc16I	TGCGCA	1 cut(s)	1386
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccI	GTMKAC	2 cut(s)	415, 531
AciI	CCGC	2 cut(s)	94, 1030
AclWI	GGATC	1 cut(s)	699
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	4 cut(s)	100, 986, 1188, 1248
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	4 cut(s)	782, 981, 1202, 1262
AfeI	AGCGCT	1 cut(s)	1144
AfiI	CCNNNNNNNGG	2 cut(s)	487, 1099
AgeI	ACCGGT	1 cut(s)	960
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	3 cut(s)	167, 311, 500
AlwI	GGATC	1 cut(s)	699
Aor51HI	AGCGCT	1 cut(s)	1144
AoxI	GGCC	4 cut(s)	478, 586, 1157, 1264
ApeKI	GCWGC	3 cut(s)	564, 697, 714
ApoI	RAATTY	4 cut(s)	100, 986, 1188, 1248
ArsI	GACNNNNNNTTYG	2 cut(s)	901, 933
AsiGI	ACCGGT	1 cut(s)	960
AspA2I	CCTAGG	1 cut(s)	842
AspLEI	GCGC	3 cut(s)	560, 1145, 1387
AspS9I	GGNCC	1 cut(s)	963
AsuHPI	GGTGA	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	963
AvrII	CCTAGG	1 cut(s)	842
AxyI	CCTNAGG	1 cut(s)	1353
BaeGI	GKGCMC	1 cut(s)	881
BanII	GRGCYC	2 cut(s)	201, 1352
BarI	GAAGNNNNNNTAC	2 cut(s)	1005, 1037
BbsI	GAAGAC	3 cut(s)	232, 452, 617
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	551, 701, 709
BccI	CCATC	5 cut(s)	404, 578, 761, 827, 896
BceAI	ACGGC	1 cut(s)	1279
BcoDI	GTCTC	3 cut(s)	167, 311, 500
BfaI	CTAG	8 cut(s)	671, 725, 843, 1212, 1272, 1295, 1410, 1526
BfoI	RGCGCY	1 cut(s)	1146
BisI	GCNGC	3 cut(s)	565, 698, 715
BlnI	CCTAGG	1 cut(s)	842
BlpI	GCTNAGC	1 cut(s)	181
BlsI	GCNGC	3 cut(s)	566, 699, 716
Bme18I	GGWCC	1 cut(s)	963
BmgT120I	GGNCC	1 cut(s)	963
BmrI	ACTGGG	2 cut(s)	1233, 1293
BmsI	GCATC	3 cut(s)	14, 622, 1048
BmuI	ACTGGG	2 cut(s)	1233, 1293
BoxI	GACNNNNGTC	1 cut(s)	961
BpiI	GAAGAC	3 cut(s)	232, 452, 617
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu10I	CCTNAGC	1 cut(s)	1322
Bpu1102I	GCTNAGC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	1056
BsaBI	GATNNNNATC	1 cut(s)	1086
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	842, 872
BsaWI	WCCGGW	1 cut(s)	960
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 1099
Bse118I	RCCGGY	3 cut(s)	476, 960, 1099
Bse1I	ACTGG	6 cut(s)	258, 555, 952, 1025, 1228, 1288
Bse21I	CCTNAGG	1 cut(s)	1353
Bse3DI	GCAATG	1 cut(s)	748
Bse8I	GATNNNNATC	1 cut(s)	1086
BseCI	ATCGAT	1 cut(s)	1056
BseDI	CCNNGG	2 cut(s)	842, 872
BseGI	GGATG	1 cut(s)	163
BseJI	GATNNNNATC	1 cut(s)	1086
BseLI	CCNNNNNNNGG	2 cut(s)	487, 1099
BseMI	GCAATG	1 cut(s)	748
BseMII	CTCAG	4 cut(s)	195, 1344, 1425, 1461
BseNI	ACTGG	6 cut(s)	258, 555, 952, 1025, 1228, 1288
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	3 cut(s)	551, 701, 709
BshFI	GGCC	4 cut(s)	480, 588, 1159, 1266
BshTI	ACCGGT	1 cut(s)	960
BshVI	ATCGAT	1 cut(s)	1056
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	3 cut(s)	477, 961, 1100
BslFI	GGGAC	1 cut(s)	850
BslI	CCNNNNNNNGG	2 cut(s)	487, 1099
BsmAI	GTCTC	3 cut(s)	167, 311, 500
BsmFI	GGGAC	1 cut(s)	850
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	4 cut(s)	480, 588, 1159, 1266
Bso31I	GGTCTC	1 cut(s)	500
Bsp1286I	GDGCHC	3 cut(s)	201, 881, 1352
Bsp143I	GATC	3 cut(s)	667, 691, 1087
Bsp1720I	GCTNAGC	1 cut(s)	181
BspACI	CCGC	2 cut(s)	94, 1030
BspANI	GGCC	4 cut(s)	480, 588, 1159, 1266
BspCNI	CTCAG	4 cut(s)	194, 1345, 1426, 1462
BspDI	ATCGAT	1 cut(s)	1056
BspPI	GGATC	1 cut(s)	699
BspQI	GCTCTTC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	748
BsrFI	RCCGGY	3 cut(s)	476, 960, 1099
BsrI	ACTGG	6 cut(s)	258, 555, 952, 1025, 1228, 1288
BssAI	RCCGGY	3 cut(s)	476, 960, 1099
BssECI	CCNNGG	2 cut(s)	842, 872
BssMI	GATC	3 cut(s)	667, 691, 1087
BssNAI	GTATAC	1 cut(s)	416
BssT1I	CCWWGG	2 cut(s)	842, 872
Bst1107I	GTATAC	1 cut(s)	416
Bst4CI	ACNGT	5 cut(s)	164, 427, 463, 540, 656
Bst6I	CTCTTC	3 cut(s)	189, 639, 1411
BstAPI	GCANNNNNTGC	2 cut(s)	648, 747
BstC8I	GCNNGC	4 cut(s)	478, 562, 1166, 1517
BstDEI	CTNAG	6 cut(s)	181, 1322, 1353, 1434, 1470, 1500
BstF5I	GGATG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	1146
BstHHI	GCGC	3 cut(s)	560, 1145, 1387
BstKTI	GATC	3 cut(s)	670, 694, 1090
BstMAI	GTCTC	3 cut(s)	167, 311, 500
BstMBI	GATC	3 cut(s)	667, 691, 1087
BstMWI	GCNNNNNNNGC	7 cut(s)	564, 594, 648, 747, 1165, 1170, 1505
BstNSI	RCATGY	1 cut(s)	624
BstPAI	GACNNNNGTC	1 cut(s)	961
BstSLI	GKGCMC	1 cut(s)	881
BstV1I	GCAGC	3 cut(s)	551, 701, 709
BstV2I	GAAGAC	3 cut(s)	232, 452, 617
BstZ17I	GTATAC	1 cut(s)	416
Bsu15I	ATCGAT	1 cut(s)	1056
Bsu36I	CCTNAGG	1 cut(s)	1353
BsuRI	GGCC	4 cut(s)	480, 588, 1159, 1266
BsuTUI	ATCGAT	1 cut(s)	1056
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	1032, 1578
Cac8I	GCNNGC	4 cut(s)	478, 562, 1166, 1517
CfoI	GCGC	3 cut(s)	560, 1145, 1387
Cfr10I	RCCGGY	3 cut(s)	476, 960, 1099
Cfr13I	GGNCC	1 cut(s)	963
ClaI	ATCGAT	1 cut(s)	1056
Csp6I	GTAC	4 cut(s)	781, 980, 1201, 1261
CspAI	ACCGGT	1 cut(s)	960
CviQI	GTAC	4 cut(s)	781, 980, 1201, 1261
DdeI	CTNAG	6 cut(s)	181, 1322, 1353, 1434, 1470, 1500
DpnI	GATC	3 cut(s)	669, 693, 1089
DpnII	GATC	3 cut(s)	667, 691, 1087
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	3 cut(s)	189, 639, 1411
EarI	CTCTTC	3 cut(s)	189, 639, 1411
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	842, 872
Eco24I	GRGCYC	2 cut(s)	201, 1352
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	963
Eco47III	AGCGCT	1 cut(s)	1144
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	213
Eco81I	CCTNAGG	1 cut(s)	1353
EcoICRI	GAGCTC	1 cut(s)	199
EcoT14I	CCWWGG	2 cut(s)	842, 872
EcoT22I	ATGCAT	1 cut(s)	305
EcoT38I	GRGCYC	2 cut(s)	201, 1352
ErhI	CCWWGG	2 cut(s)	842, 872
FaqI	GGGAC	1 cut(s)	850
FauI	CCCGC	1 cut(s)	101
FblI	GTMKAC	2 cut(s)	415, 531
Fnu4HI	GCNGC	3 cut(s)	565, 698, 715
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	2 cut(s)	201, 1352
Fsp4HI	GCNGC	3 cut(s)	565, 698, 715
FspBI	CTAG	8 cut(s)	671, 725, 843, 1212, 1272, 1295, 1410, 1526
FspI	TGCGCA	1 cut(s)	1386
GlaI	GCGC	3 cut(s)	559, 1144, 1386
GluI	GCNGC	3 cut(s)	565, 698, 715
HaeII	RGCGCY	1 cut(s)	1146
HaeIII	GGCC	4 cut(s)	480, 588, 1159, 1266
HapII	CCGG	3 cut(s)	477, 961, 1100
HhaI	GCGC	3 cut(s)	560, 1145, 1387
Hin6I	GCGC	3 cut(s)	558, 1143, 1385
HinP1I	GCGC	3 cut(s)	558, 1143, 1385
HindIII	AAGCTT	2 cut(s)	893, 1448
HinfI	GANTC	8 cut(s)	141, 218, 631, 676, 838, 932, 1082, 1132
HpaII	CCGG	3 cut(s)	477, 961, 1100
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	4 cut(s)	167, 416, 532, 663
Hpy188III	TCNNGA	4 cut(s)	202, 671, 680, 920
Hpy8I	GTNNAC	4 cut(s)	167, 416, 532, 663
Hpy99I	CGWCG	1 cut(s)	807
HpyAV	CCTTC	5 cut(s)	124, 400, 567, 1217, 1277
HpyCH4III	ACNGT	5 cut(s)	164, 427, 463, 540, 656
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	9 cut(s)	209, 303, 436, 567, 642, 651, 741, 750, 1515
HpyF10VI	GCNNNNNNNGC	7 cut(s)	564, 594, 648, 747, 1165, 1170, 1505
HpyF3I	CTNAG	6 cut(s)	181, 1322, 1353, 1434, 1470, 1500
HpySE526I	ACGT	1 cut(s)	29
HspAI	GCGC	3 cut(s)	558, 1143, 1385
KroI	GCCGGC	1 cut(s)	476
KroNI	GCCGGC	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	667, 691, 1087
LguI	GCTCTTC	1 cut(s)	189
Lsp1109I	GCAGC	3 cut(s)	551, 701, 709
LweI	GCATC	3 cut(s)	14, 622, 1048
MaeI	CTAG	8 cut(s)	671, 725, 843, 1212, 1272, 1295, 1410, 1526
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	1287, 1572
MalI	GATC	3 cut(s)	669, 693, 1089
MboI	GATC	3 cut(s)	667, 691, 1087
MfeI	CAATTG	1 cut(s)	1094
MhlI	GDGCHC	3 cut(s)	201, 881, 1352
MluCI	AATT	9 cut(s)	100, 291, 321, 986, 1094, 1188, 1248, 1330, 1427
MlyI	GAGTC	4 cut(s)	625, 832, 941, 1141
MmeI	TCCRAC	1 cut(s)	1377
MnlI	CCTC	9 cut(s)	34, 306, 599, 829, 1063, 1149, 1305, 1348, 1435
Mph1103I	ATGCAT	1 cut(s)	305
MroNI	GCCGGC	1 cut(s)	476
MseI	TTAA	7 cut(s)	275, 1001, 1182, 1193, 1242, 1253, 1329
MslI	CAYNNNNRTG	2 cut(s)	405, 828
MspI	CCGG	3 cut(s)	477, 961, 1100
MunI	CAATTG	1 cut(s)	1094
Mva1269I	GAATGC	1 cut(s)	305
MwoI	GCNNNNNNNGC	7 cut(s)	564, 594, 648, 747, 1165, 1170, 1505
NaeI	GCCGGC	1 cut(s)	478
NdeII	GATC	3 cut(s)	667, 691, 1087
NgoMIV	GCCGGC	1 cut(s)	476
NmeAIII	GCCGAG	1 cut(s)	1185
NmuCI	GTSAC	2 cut(s)	1287, 1572
NsbI	TGCGCA	1 cut(s)	1386
NsiI	ATGCAT	1 cut(s)	305
NspI	RCATGY	1 cut(s)	624
PciSI	GCTCTTC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	478
PfeI	GAWTC	4 cut(s)	141, 218, 676, 1082
PflFI	GACNNNGTC	2 cut(s)	1225, 1285
PflMI	CCANNNNNTGG	1 cut(s)	487
PinAI	ACCGGT	1 cut(s)	960
PkrI	GCNGC	3 cut(s)	566, 699, 716
PleI	GAGTC	4 cut(s)	625, 832, 940, 1140
PpsI	GAGTC	4 cut(s)	625, 832, 940, 1140
PshAI	GACNNNNGTC	1 cut(s)	961
PsiI	TTATAA	3 cut(s)	339, 891, 993
Psp124BI	GAGCTC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	963
PsyI	GACNNNGTC	2 cut(s)	1225, 1285
RsaI	GTAC	4 cut(s)	782, 981, 1202, 1262
RsaNI	GTAC	4 cut(s)	781, 980, 1201, 1261
RseI	CAYNNNNRTG	2 cut(s)	405, 828
SacI	GAGCTC	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	7 cut(s)	275, 1001, 1182, 1193, 1242, 1253, 1329
SatI	GCNGC	3 cut(s)	565, 698, 715
Sau3AI	GATC	3 cut(s)	667, 691, 1087
Sau96I	GGNCC	1 cut(s)	963
SchI	GAGTC	4 cut(s)	625, 832, 941, 1141
SduI	GDGCHC	3 cut(s)	201, 881, 1352
SfaNI	GCATC	3 cut(s)	14, 622, 1048
SinI	GGWCC	1 cut(s)	963
SmiMI	CAYNNNNRTG	2 cut(s)	405, 828
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	9 cut(s)	100, 291, 321, 986, 1094, 1188, 1248, 1330, 1427
SsiI	CCGC	2 cut(s)	94, 1030
SspI	AATATT	2 cut(s)	1218, 1278
SspMI	CTAG	8 cut(s)	671, 725, 843, 1212, 1272, 1295, 1410, 1526
SstI	GAGCTC	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	842, 872
TaaI	ACNGT	5 cut(s)	164, 427, 463, 540, 656
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	6 cut(s)	213, 519, 616, 762, 907, 1056
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	9 cut(s)	100, 291, 321, 986, 1094, 1188, 1248, 1330, 1427
TatI	WGTACW	2 cut(s)	780, 979
TfiI	GAWTC	4 cut(s)	141, 218, 676, 1082
Tru1I	TTAA	7 cut(s)	275, 1001, 1182, 1193, 1242, 1253, 1329
Tru9I	TTAA	7 cut(s)	275, 1001, 1182, 1193, 1242, 1253, 1329
TscAI	CASTG	2 cut(s)	1032, 1585
TseFI	GTSAC	2 cut(s)	1287, 1572
TseI	GCWGC	3 cut(s)	564, 697, 714
Tsp45I	GTSAC	2 cut(s)	1287, 1572
TspDTI	ATGAA	6 cut(s)	39, 505, 723, 840, 1079, 1410
TspGWI	ACGGA	2 cut(s)	585, 648
TspRI	CASTG	2 cut(s)	1032, 1585
Tth111I	GACNNNGTC	2 cut(s)	1225, 1285
Van91I	CCANNNNNTGG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	963
XapI	RAATTY	4 cut(s)	100, 986, 1188, 1248
XbaI	TCTAGA	1 cut(s)	670
XceI	RCATGY	1 cut(s)	624
XcmI	CCANNNNNNNNNTGG	2 cut(s)	830, 1147
XmaJI	CCTAGG	1 cut(s)	842
XmiI	GTMKAC	2 cut(s)	415, 531
XspI	CTAG	8 cut(s)	671, 725, 843, 1212, 1272, 1295, 1410, 1526
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.