RLG00000017935

DA1-related 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008106
Physical Location & Seq
Forward (+)
23234152 .. 23235264
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017935

Sequence Viewer

Length: 525 bp
ATGTTGACAGGGTCACTTCTAGCTCAACAGATGATAAGTGCATGGCTAAGGCTTAAAGGTTATCCCAACTTGTGCCCTGAGCTTGAAAAAGGTATCTGCCAATATCTGGCACATAGGTGGTTGGAGTATTCTAATTCTGATTCATCTAGAAAATTGGCTGAGGTTGAGCAGAAGCTTTTCATATTTAGGAAAGGGAAAAAAATGAATCAGATTGTGGAGAAGCATTCTGACAGCAAAGGAATCGGTGCACAGGCATGGTCTACGTATGACACGCAAAACAATTTGAAAGACAGGAAAGTTTCCATCTGTGAATTGCTTGGAGATGAGTTACTTGTGATTGGGCTGATTGTTTGCTTCATAGATGTTCTTACTGCTGAAATTGGTGTATGTTTTCTTGGACCAACTTTTGCTCCAAACAAGGTTGGAAAGTTGAAGATCGAGATGGATTCATCTATTGTTGTCTACTACGTATGCATATCAATTGTAATCCCTTTTGATCCATTGTCATCACTTGCAGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM NB-ARC UIM

Protein Analysis

175

Amino Acids

19.41

Weight (kDa)

7.56

Isoelectric Point (pI)

24.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 1 - 61 3.5e-16 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 106
AccI GTMKAC 2 cut(s) 260, 462
AclWI GGATC 1 cut(s) 491
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 3 cut(s) 86, 286, 433
AleI CACNNNNGTG 1 cut(s) 115
AluBI AGCT 3 cut(s) 23, 82, 175
AluI AGCT 3 cut(s) 23, 82, 175
Alw21I GWGCWC 1 cut(s) 250
Alw44I GTGCAC 1 cut(s) 246
AlwI GGATC 1 cut(s) 491
ApaLI GTGCAC 1 cut(s) 246
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 398
AvaII GGWCC 1 cut(s) 398
BaeGI GKGCMC 2 cut(s) 77, 250
Bbv12I GWGCWC 1 cut(s) 250
BbvCI CCTCAGC 1 cut(s) 159
BccI CCATC 2 cut(s) 311, 436
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BfaI CTAG 2 cut(s) 20, 147
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
Bpu10I CCTNAGC 3 cut(s) 47, 78, 159
BsaAI YACGTR 2 cut(s) 264, 469
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 2 cut(s) 69, 150
BseSI GKGCMC 2 cut(s) 77, 250
BsiHKAI GWGCWC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 106
BsmI GAATGC 1 cut(s) 223
Bsp1286I GDGCHC 2 cut(s) 77, 250
Bsp143I GATC 2 cut(s) 435, 496
BspCNI CTCAG 2 cut(s) 70, 151
BspPI GGATC 1 cut(s) 491
BssMI GATC 2 cut(s) 435, 496
BstBAI YACGTR 2 cut(s) 264, 469
BstDEI CTNAG 3 cut(s) 47, 78, 159
BstKTI GATC 2 cut(s) 438, 499
BstMBI GATC 2 cut(s) 435, 496
BstSLI GKGCMC 2 cut(s) 77, 250
BstSNI TACGTA 2 cut(s) 264, 469
Cfr13I GGNCC 1 cut(s) 398
CviAII CATG 2 cut(s) 42, 255
CviJI RGCY 7 cut(s) 23, 46, 52, 82, 158, 175, 343
CviKI_1 RGCY 7 cut(s) 23, 46, 52, 82, 158, 175, 343
DdeI CTNAG 3 cut(s) 47, 78, 159
DpnI GATC 2 cut(s) 437, 498
DpnII GATC 2 cut(s) 435, 496
Eco105I TACGTA 2 cut(s) 264, 469
Eco47I GGWCC 1 cut(s) 398
EcoT22I ATGCAT 1 cut(s) 476
FaeI CATG 2 cut(s) 45, 258
FaiI YATR 9 cut(s) 43, 114, 182, 256, 267, 359, 388, 472, 476
FatI CATG 2 cut(s) 41, 254
FblI GTMKAC 2 cut(s) 260, 462
FspBI CTAG 2 cut(s) 20, 147
Hin1II CATG 2 cut(s) 45, 258
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 4 cut(s) 140, 205, 240, 446
Hpy166II GTNNAC 4 cut(s) 6, 248, 261, 463
Hpy188I TCNGA 3 cut(s) 139, 210, 229
Hpy188III TCNNGA 2 cut(s) 147, 439
Hpy8I GTNNAC 4 cut(s) 6, 248, 261, 463
HpyCH4IV ACGT 2 cut(s) 263, 468
HpyCH4V TGCA 4 cut(s) 41, 248, 474, 515
HpyF3I CTNAG 3 cut(s) 47, 78, 159
HpySE526I ACGT 2 cut(s) 263, 468
Hsp92II CATG 2 cut(s) 45, 258
Kzo9I GATC 2 cut(s) 435, 496
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 5 cut(s) 90, 92, 236, 277, 501
MaeI CTAG 2 cut(s) 20, 147
MaeII ACGT 2 cut(s) 263, 468
MaeIII GTNAC 2 cut(s) 12, 327
MalI GATC 2 cut(s) 437, 498
MboI GATC 2 cut(s) 435, 496
MboII GAAGA 1 cut(s) 445
MfeI CAATTG 1 cut(s) 480
MhlI GDGCHC 2 cut(s) 77, 250
MluCI AATT 6 cut(s) 133, 152, 280, 311, 378, 480
MmeI TCCRAC 2 cut(s) 102, 403
MnlI CCTC 1 cut(s) 154
Mph1103I ATGCAT 1 cut(s) 476
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 2 cut(s) 115, 253
MunI CAATTG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 223
NdeII GATC 2 cut(s) 435, 496
NlaIII CATG 2 cut(s) 45, 258
NmuCI GTSAC 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 476
OliI CACNNNNGTG 1 cut(s) 115
PctI GAATGC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 4 cut(s) 140, 205, 240, 446
PflFI GACNNNGTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 106
Ppu21I YACGTR 2 cut(s) 264, 469
PspPI GGNCC 1 cut(s) 398
PsyI GACNNNGTC 1 cut(s) 10
RseI CAYNNNNRTG 2 cut(s) 115, 253
SaqAI TTAA 1 cut(s) 54
Sau3AI GATC 2 cut(s) 435, 496
Sau96I GGNCC 1 cut(s) 398
SduI GDGCHC 2 cut(s) 77, 250
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 2 cut(s) 115, 253
SnaBI TACGTA 2 cut(s) 264, 469
Sse9I AATT 6 cut(s) 133, 152, 280, 311, 378, 480
SspMI CTAG 2 cut(s) 20, 147
TaiI ACGT 2 cut(s) 266, 471
TaqI TCGA 1 cut(s) 438
TasI AATT 6 cut(s) 133, 152, 280, 311, 378, 480
TfiI GAWTC 4 cut(s) 140, 205, 240, 446
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 12
TspDTI ATGAA 5 cut(s) 132, 169, 218, 346, 438
Tth111I GACNNNGTC 1 cut(s) 10
Van91I CCANNNNNTGG 1 cut(s) 106
VneI GTGCAC 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 398
XbaI TCTAGA 1 cut(s) 146
XmiI GTMKAC 2 cut(s) 260, 462
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 2 cut(s) 20, 147
Zsp2I ATGCAT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.