Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008106

Physical Location & Seq

Genomic Coordinates Reverse (-)

16257647 .. 16258871

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0176800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCGGTGCTGGCCAAGACTGACTCCGAGGCGAGCAGCCTCAGCCACTCCTCACCGCCGCGCTCGCCACGCAGGAGCAGCGAGCGCGGTGCAGTTTACTACGTGCAGAGCCCCTCACGGGACTCGCACGATGGCGAGAAGACCACCAACTCCTTCCACTCCAGCCCGATGGGCTCGCCGCCTCACTCCCACTCCAACTCCTCCCTCGGCCCCCACTCGCGCGAGTCCGCCTCCACCCGGTTTTCTGGCTCACGGAGCAGCAAGCAACACAGTGGACCCCAGCGCAAGGGGTGGAGGCCGTGGAAGGATCAGTTCGACTCCATTGAAGAAGAGGGCCTGCTCGACGATGACAACGAAAGCGATGGTCTCTCTCGCCGGTGTTACTTTCTCGCTTTCATTTTAGGCTTCTTTGCGCTATTTACTCTGTTCTCTTTGATTCTGTGGGGTGCGAGTAGGGCACAGAAGCCCGTTATCACTATGAAGAGCATCAGATTTGATCAATTTGTGGTTCAAGCCGGGGAGGATTTCTCAGGAGTGGCCACCAACATGGTGTCCTTGAATTCCACCGTGAAGTTCACATTTCGCAACACTGCTACATTTTTTGGGGTTCATGTCAAATCAACGCCTCTTGATCTCTCATTCTCTGAGCTCACCGTAGCCAGCGGAATGACAAACAAATTTTACCAATCGAGAAAGAGTCAGAGACCGATTACAGTGAATTTGATAGGGAACAAAATTCCACTTTACGGTGGGGGAGCAAATTTAGGAAGCTTGAATGGTGCACCTATTCAGCCACTGACACTGGCATTGAAGTTCGAGGTGAGATCGGGAGCTAATGTTTTGGGAAAACTGGTGCGACCTAAGTTCAACAAGAGAGTCGATTGCACTGTGGTTATGGATCCTAAGAAGATGAATGTGGTCATTGCCTTGAAGAACGAATGCACTTACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DA1-like LIM

Protein Analysis

317

Amino Acids

34.91

Weight (kDa)

9.77

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008106)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19960
malus_domestica	MD10G1020800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0111871 RchiOBHm_Chr2g0111901
rosa_laevigata	RLG00000017927 RLG00000017933 RLG00000017934 RLG00000017935
rosa_multiflora	Rmu_co8359603.1_g000001 Rmu_co8457531.1_g000001 Rmu_sc0003656.1_g000003 Rmu_sc0006833.1_g000002 Rmu_sc0006833.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307790
rosa_rugosa	Rorug02G0176500 Rorug02G0176800 Rorug02G0176900
rosa_samantha	Rh2AG229200 Rh2BG241700 Rh2BG242000 Rh2CG233400 Rh2DG237000
rosa_wichuraiana	Rw2G017720 Rw2G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	61, 87, 220, 222
AciI	CCGC	6 cut(s)	56, 59, 87, 179, 228, 663
AclWI	GGATC	3 cut(s)	315, 893, 906
AcoI	YGGCCR	2 cut(s)	12, 537
AcsI	RAATTY	5 cut(s)	559, 677, 718, 735, 760
AfiI	CCNNNNNNNGG	4 cut(s)	118, 237, 286, 746
AgsI	TTSAA	7 cut(s)	326, 512, 559, 775, 811, 868, 931
AluBI	AGCT	3 cut(s)	649, 771, 833
AluI	AGCT	3 cut(s)	649, 771, 833
Alw21I	GWGCWC	2 cut(s)	651, 784
Alw26I	GTCTC	2 cut(s)	371, 697
Alw44I	GTGCAC	1 cut(s)	780
AlwI	GGATC	3 cut(s)	315, 893, 906
AlwNI	CAGNNNCTG	1 cut(s)	796
AoxI	GGCC	5 cut(s)	12, 208, 296, 334, 537
ApaLI	GTGCAC	1 cut(s)	780
ApeKI	GCWGC	3 cut(s)	36, 78, 258
ApoI	RAATTY	5 cut(s)	559, 677, 718, 735, 760
AspLEI	GCGC	5 cut(s)	63, 87, 222, 285, 415
AspS9I	GGNCC	3 cut(s)	209, 275, 334
AsuC2I	CCSGG	2 cut(s)	238, 517
AsuHPI	GGTGA	3 cut(s)	45, 643, 832
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	2 cut(s)	460, 784
BalI	TGGCCA	2 cut(s)	14, 539
BamHI	GGATCC	1 cut(s)	898
BanII	GRGCYC	3 cut(s)	113, 176, 651
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	2 cut(s)	651, 784
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	48, 90, 270
BccI	CCATC	3 cut(s)	125, 163, 356
BceAI	ACGGC	1 cut(s)	283
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	2 cut(s)	238, 517
BcoDI	GTCTC	2 cut(s)	371, 697
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	5 cut(s)	37, 59, 79, 179, 259
BlsI	GCNGC	5 cut(s)	38, 60, 80, 180, 260
Bme1390I	CCNGG	2 cut(s)	238, 517
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	209, 275, 334
BmiI	GGNNCC	3 cut(s)	211, 277, 900
BmrFI	CCNGG	2 cut(s)	238, 517
BmsI	GCATC	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	146
BplI	GAGNNNNNCTC	4 cut(s)	215, 247, 512, 544
BpmI	CTGGAG	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	238, 517
BsaAI	YACGTR	1 cut(s)	103
BsaI	GGTCTC	2 cut(s)	371, 697
BsaJI	CCNNGG	4 cut(s)	27, 205, 299, 516
BsaXI	ACNNNNNCTCC	6 cut(s)	176, 182, 206, 212, 822, 852
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 237, 286, 746
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	3 cut(s)	807, 855, 949
Bse3DI	GCAATG	1 cut(s)	921
BseDI	CCNNGG	4 cut(s)	27, 205, 299, 516
BseLI	CCNNNNNNNGG	4 cut(s)	118, 237, 286, 746
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	3 cut(s)	55, 543, 636
BseNI	ACTGG	3 cut(s)	807, 855, 949
BseRI	GAGGAG	2 cut(s)	40, 190
BseSI	GKGCMC	2 cut(s)	460, 784
BseXI	GCAGC	3 cut(s)	48, 90, 270
BseYI	CCCAGC	1 cut(s)	279
BsgI	GTGCAG	2 cut(s)	111, 125
Bsh1236I	CGCG	4 cut(s)	61, 87, 220, 222
BshFI	GGCC	5 cut(s)	14, 210, 298, 336, 539
BsiHKAI	GWGCWC	2 cut(s)	651, 784
BsiSI	CCGG	3 cut(s)	238, 376, 516
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	4 cut(s)	118, 237, 286, 746
BsmAI	GTCTC	2 cut(s)	371, 697
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	944
BsnI	GGCC	5 cut(s)	14, 210, 298, 336, 539
Bso31I	GGTCTC	2 cut(s)	371, 697
Bsp1286I	GDGCHC	5 cut(s)	113, 176, 460, 651, 784
Bsp143I	GATC	5 cut(s)	307, 496, 631, 824, 898
BspACI	CCGC	6 cut(s)	56, 59, 87, 179, 228, 663
BspANI	GGCC	5 cut(s)	14, 210, 298, 336, 539
BspCNI	CTCAG	3 cut(s)	54, 542, 637
BspFNI	CGCG	4 cut(s)	61, 87, 220, 222
BspLI	GGNNCC	3 cut(s)	211, 277, 900
BspPI	GGATC	3 cut(s)	315, 893, 906
BspQI	GCTCTTC	1 cut(s)	476
BspTNI	GGTCTC	2 cut(s)	371, 697
BsrDI	GCAATG	1 cut(s)	921
BsrFI	RCCGGY	1 cut(s)	375
BsrI	ACTGG	3 cut(s)	807, 855, 949
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	4 cut(s)	27, 205, 299, 516
BssMI	GATC	5 cut(s)	307, 496, 631, 824, 898
Bst4CI	ACNGT	6 cut(s)	272, 568, 655, 715, 749, 889
Bst6I	CTCTTC	2 cut(s)	324, 476
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	8 cut(s)	12, 34, 65, 83, 176, 263, 338, 661
BstDEI	CTNAG	5 cut(s)	41, 529, 645, 861, 903
BstDSI	CCRYGG	1 cut(s)	299
BstFNI	CGCG	4 cut(s)	61, 87, 220, 222
BstHHI	GCGC	5 cut(s)	63, 87, 222, 285, 415
BstKTI	GATC	5 cut(s)	310, 499, 634, 827, 901
BstMAI	GTCTC	2 cut(s)	371, 697
BstMBI	GATC	5 cut(s)	307, 496, 631, 824, 898
BstMWI	GCNNNNNNNGC	8 cut(s)	42, 64, 69, 78, 84, 171, 255, 455
BstSCI	CCNGG	2 cut(s)	236, 515
BstSLI	GKGCMC	2 cut(s)	460, 784
BstUI	CGCG	4 cut(s)	61, 87, 220, 222
BstV1I	GCAGC	3 cut(s)	48, 90, 270
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	898
BstXI	CCANNNNNNTGG	2 cut(s)	169, 547
BstYI	RGATCY	1 cut(s)	898
BsuRI	GGCC	5 cut(s)	14, 210, 298, 336, 539
BtgI	CCRYGG	1 cut(s)	299
BtgZI	GCGATG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	6 cut(s)	277, 588, 720, 794, 800, 885
Cac8I	GCNNGC	8 cut(s)	12, 34, 65, 83, 176, 263, 338, 661
CaiI	CAGNNNCTG	1 cut(s)	796
CfoI	GCGC	5 cut(s)	63, 87, 222, 285, 415
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	3 cut(s)	209, 275, 334
CviAII	CATG	2 cut(s)	547, 611
DdeI	CTNAG	5 cut(s)	41, 529, 645, 861, 903
DpnI	GATC	5 cut(s)	309, 498, 633, 826, 900
DpnII	GATC	5 cut(s)	307, 496, 631, 824, 898
EaeI	YGGCCR	2 cut(s)	12, 537
Eam1104I	CTCTTC	2 cut(s)	324, 476
EarI	CTCTTC	2 cut(s)	324, 476
EciI	GGCGGA	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	649
Eco24I	GRGCYC	3 cut(s)	113, 176, 651
Eco31I	GGTCTC	2 cut(s)	371, 697
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	649
EcoICRI	GAGCTC	1 cut(s)	649
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	559
EcoT38I	GRGCYC	3 cut(s)	113, 176, 651
FaeI	CATG	2 cut(s)	550, 614
FaiI	YATR	4 cut(s)	479, 548, 612, 896
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	2 cut(s)	546, 610
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	5 cut(s)	37, 59, 79, 179, 259
FriOI	GRGCYC	3 cut(s)	113, 176, 651
Fsp4HI	GCNGC	5 cut(s)	37, 59, 79, 179, 259
GlaI	GCGC	5 cut(s)	62, 86, 221, 284, 414
GluI	GCNGC	5 cut(s)	37, 59, 79, 179, 259
GsaI	CCCAGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	145
HaeIII	GGCC	5 cut(s)	14, 210, 298, 336, 539
HapII	CCGG	3 cut(s)	238, 376, 516
HhaI	GCGC	5 cut(s)	63, 87, 222, 285, 415
Hin1II	CATG	2 cut(s)	550, 614
Hin6I	GCGC	5 cut(s)	61, 85, 220, 283, 413
HinP1I	GCGC	5 cut(s)	61, 85, 220, 283, 413
HindIII	AAGCTT	1 cut(s)	769
HinfI	GANTC	7 cut(s)	23, 122, 224, 317, 436, 697, 876
HpaII	CCGG	3 cut(s)	238, 376, 516
HphI	GGTGA	3 cut(s)	45, 643, 832
Hpy166II	GTNNAC	4 cut(s)	97, 275, 576, 782
Hpy188I	TCNGA	4 cut(s)	28, 491, 646, 702
Hpy188III	TCNNGA	4 cut(s)	531, 629, 690, 828
Hpy8I	GTNNAC	4 cut(s)	97, 275, 576, 782
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	2 cut(s)	163, 298
HpyCH4III	ACNGT	6 cut(s)	272, 568, 655, 715, 749, 889
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	5 cut(s)	92, 106, 782, 885, 942
HpyF10VI	GCNNNNNNNGC	8 cut(s)	42, 64, 69, 78, 84, 171, 255, 455
HpyF3I	CTNAG	5 cut(s)	41, 529, 645, 861, 903
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	550, 614
HspAI	GCGC	5 cut(s)	61, 85, 220, 283, 413
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	5 cut(s)	307, 496, 631, 824, 898
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	4 cut(s)	75, 255, 755, 830
Lsp1109I	GCAGC	3 cut(s)	48, 90, 270
LweI	GCATC	1 cut(s)	495
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	5 cut(s)	309, 498, 633, 826, 900
MboI	GATC	5 cut(s)	307, 496, 631, 824, 898
MboII	GAAGA	6 cut(s)	151, 338, 341, 493, 919, 943
MflI	RGATCY	1 cut(s)	898
MhlI	GDGCHC	5 cut(s)	113, 176, 460, 651, 784
MlsI	TGGCCA	2 cut(s)	14, 539
MluCI	AATT	6 cut(s)	500, 559, 677, 718, 735, 760
MluNI	TGGCCA	2 cut(s)	14, 539
MlyI	GAGTC	6 cut(s)	17, 116, 233, 311, 706, 885
MmeI	TCCRAC	1 cut(s)	219
Mox20I	TGGCCA	2 cut(s)	14, 539
MscI	TGGCCA	2 cut(s)	14, 539
MslI	CAYNNNNRTG	1 cut(s)	545
Msp20I	TGGCCA	2 cut(s)	14, 539
MspA1I	CMGCKG	1 cut(s)	663
MspI	CCGG	3 cut(s)	238, 376, 516
MspR9I	CCNGG	2 cut(s)	238, 517
Mva1269I	GAATGC	1 cut(s)	944
MvnI	CGCG	4 cut(s)	61, 87, 220, 222
MwoI	GCNNNNNNNGC	8 cut(s)	42, 64, 69, 78, 84, 171, 255, 455
NciI	CCSGG	2 cut(s)	238, 517
NdeII	GATC	5 cut(s)	307, 496, 631, 824, 898
NlaIII	CATG	2 cut(s)	550, 614
NlaIV	GGNNCC	3 cut(s)	211, 277, 900
NmeAIII	GCCGAG	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PctI	GAATGC	1 cut(s)	944
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	5 cut(s)	38, 60, 80, 180, 260
PleI	GAGTC	6 cut(s)	17, 116, 232, 311, 705, 884
PpsI	GAGTC	6 cut(s)	17, 116, 232, 311, 705, 884
Ppu21I	YACGTR	1 cut(s)	103
Psp124BI	GAGCTC	1 cut(s)	651
PspFI	CCCAGC	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	211, 277, 900
PspPI	GGNCC	3 cut(s)	209, 275, 334
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	898
RseI	CAYNNNNRTG	1 cut(s)	545
SacI	GAGCTC	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	476
SatI	GCNGC	5 cut(s)	37, 59, 79, 179, 259
Sau3AI	GATC	5 cut(s)	307, 496, 631, 824, 898
Sau96I	GGNCC	3 cut(s)	209, 275, 334
SchI	GAGTC	6 cut(s)	17, 116, 233, 311, 706, 885
ScrFI	CCNGG	2 cut(s)	238, 517
SduI	GDGCHC	5 cut(s)	113, 176, 460, 651, 784
SetI	ASST	7 cut(s)	105, 651, 773, 787, 822, 835, 862
SfaNI	GCATC	1 cut(s)	495
SgrAI	CRCCGGYG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	545
Sse9I	AATT	6 cut(s)	500, 559, 677, 718, 735, 760
SsiI	CCGC	6 cut(s)	56, 59, 87, 179, 228, 663
SstI	GAGCTC	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	236, 515
TaaI	ACNGT	6 cut(s)	272, 568, 655, 715, 749, 889
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	5 cut(s)	315, 342, 689, 816, 879
TaqII	GACCGA	1 cut(s)	721
TasI	AATT	6 cut(s)	500, 559, 677, 718, 735, 760
TauI	GCSGC	2 cut(s)	61, 181
TfiI	GAWTC	1 cut(s)	436
TscAI	CASTG	6 cut(s)	277, 595, 720, 801, 807, 892
TseI	GCWGC	3 cut(s)	36, 78, 258
TspDTI	ATGAA	4 cut(s)	385, 494, 599, 926
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	6 cut(s)	277, 595, 720, 801, 807, 892
VneI	GTGCAC	1 cut(s)	780
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	5 cut(s)	559, 677, 718, 735, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.