RLG00000017934

DA1-related 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008106
Physical Location & Seq
Forward (+)
23233054 .. 23233801
748 bp
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UTR
Exon/CDS
Intron
RLM00000017934

Sequence Viewer

Length: 393 bp
ATGGCTCTGAGCGCCCAAAGAGCCTCAACATCTGTTCCCTTATCTTTTTCATGGAAATTTGATGTGTTCTTGAGTTTCAAGGGGGAAACGCGCAAGACTTTTACAGATCATTTATACAATGCATTGCGGAGGCGAGCAATCAAAGTCTTCTGGGACCTTCAACTTGAGAAACGCACAACTATCTCTTCAGAGCTCATGACTGCCATTGAAGAATCAAGATATGAAACCAAGTTTATCAAAGAACTTGTAGAATCATTGTATAACAAACTGAGATCTATCAAGGAAATTCAGATGGTCAAGTTGAGTATATGGAACATCCATACTGGAGACAAAGATATTGCCCCTCCCATGAAGGTGATGGGACTCTTAGGTGCTGTAGCTGTGAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM

Protein Analysis

131

Amino Acids

15.03

Weight (kDa)

9.65

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 19 - 73 7.5e-09 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 91
AciI CCGC 1 cut(s) 127
AcsI RAATTY 2 cut(s) 56, 285
AcuI CTGAAG 1 cut(s) 171
AgsI TTSAA 3 cut(s) 79, 161, 209
AluBI AGCT 2 cut(s) 193, 380
AluI AGCT 2 cut(s) 193, 380
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 321
ApoI RAATTY 2 cut(s) 56, 285
AspLEI GCGC 2 cut(s) 14, 93
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 367
AvaII GGWCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 195
BccI CCATC 2 cut(s) 286, 352
BcoDI GTCTC 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 15
BglII AGATCT 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 345
BpuEI CTTGAG 2 cut(s) 91, 185
Bse1I ACTGG 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 122
BseGI GGATG 1 cut(s) 315
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 195
BslFI GGGAC 2 cut(s) 167, 375
BsmAI GTCTC 1 cut(s) 321
BsmFI GGGAC 2 cut(s) 167, 375
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 106, 272
BspACI CCGC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 261
BspFNI CGCG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 328
BssMI GATC 2 cut(s) 106, 272
Bst6I CTCTTC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 8, 269, 367
BstF5I GGATG 1 cut(s) 315
BstFNI CGCG 1 cut(s) 91
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 93
BstKTI GATC 2 cut(s) 109, 275
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 2 cut(s) 106, 272
BstMWI GCNNNNNNNGC 2 cut(s) 11, 20
BstSFI CTRYAG 1 cut(s) 375
BstUI CGCG 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BtsCI GGATG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 135
CciI TCATGA 1 cut(s) 195
CfoI GCGC 2 cut(s) 14, 93
Cfr13I GGNCC 1 cut(s) 154
CviAII CATG 3 cut(s) 51, 196, 349
CviJI RGCY 4 cut(s) 5, 23, 193, 380
CviKI_1 RGCY 4 cut(s) 5, 23, 193, 380
DdeI CTNAG 3 cut(s) 8, 269, 367
DpnI GATC 2 cut(s) 108, 274
DpnII GATC 2 cut(s) 106, 272
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 195
FaeI CATG 3 cut(s) 54, 199, 352
FaiI YATR 9 cut(s) 52, 115, 197, 222, 261, 308, 310, 321, 350
FaqI GGGAC 2 cut(s) 167, 375
FatI CATG 3 cut(s) 50, 195, 348
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 1 cut(s) 195
GlaI GCGC 2 cut(s) 13, 92
GsuI CTGGAG 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 15
HhaI GCGC 2 cut(s) 14, 93
Hin1II CATG 3 cut(s) 54, 199, 352
Hin6I GCGC 2 cut(s) 12, 91
HinP1I GCGC 2 cut(s) 12, 91
HinfI GANTC 3 cut(s) 212, 251, 363
HphI GGTGA 1 cut(s) 367
Hpy188I TCNGA 3 cut(s) 9, 190, 291
Hpy188III TCNNGA 3 cut(s) 70, 196, 216
HpyAV CCTTC 2 cut(s) 167, 346
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 20
HpyF3I CTNAG 3 cut(s) 8, 269, 367
Hsp92II CATG 3 cut(s) 54, 199, 352
HspAI GCGC 2 cut(s) 12, 91
Kzo9I GATC 2 cut(s) 106, 272
LpnPI CCDG 2 cut(s) 136, 309
MalI GATC 2 cut(s) 108, 274
MboI GATC 2 cut(s) 106, 272
MboII GAAGA 3 cut(s) 139, 177, 221
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 2 cut(s) 56, 285
MlyI GAGTC 1 cut(s) 357
MnlI CCTC 3 cut(s) 34, 123, 354
Mph1103I ATGCAT 1 cut(s) 124
MslI CAYNNNNRTG 1 cut(s) 353
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 11, 20
NdeII GATC 2 cut(s) 106, 272
NlaIII CATG 3 cut(s) 54, 199, 352
NlaIV GGNNCC 1 cut(s) 155
NsiI ATGCAT 1 cut(s) 124
PagI TCATGA 1 cut(s) 195
PfeI GAWTC 2 cut(s) 212, 251
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
PpuMI RGGWCCY 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 195
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 155
PspPI GGNCC 1 cut(s) 154
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 353
SacI GAGCTC 1 cut(s) 195
Sau3AI GATC 2 cut(s) 106, 272
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 357
SduI GDGCHC 1 cut(s) 195
SetI ASST 5 cut(s) 159, 195, 357, 373, 382
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 2 cut(s) 70, 164
SmoI CTYRAG 2 cut(s) 70, 164
Sse9I AATT 2 cut(s) 56, 285
SsiI CCGC 1 cut(s) 127
SstI GAGCTC 1 cut(s) 195
TasI AATT 2 cut(s) 56, 285
TfiI GAWTC 2 cut(s) 212, 251
TspDTI ATGAA 3 cut(s) 39, 237, 365
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 2 cut(s) 56, 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.