Cyclin-dependent kinase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G10270 AT5G64960 AT5G64960 |
| fragaria_vesca | FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_4g11370 FvH4_4g11370 FvH4_4g11370 |
| malus_domestica | MD04G1037600.v1.1 MD15G1318300.v1.1 |
| prunus_persica | Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.6G187600_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0113361 RchiOBHm_Chr2g0113381 RchiOBHm_Chr4g0407881 |
| rosa_laevigata | RLG00000008692 RLG00000018058 |
| rosa_multiflora | Rmu_sc0002073.1_g000029 Rmu_sc0007621.1_g000001 Rmu_sc0011967.1_g000006 Rmu_sc0029075.1_g000002 Rmu_sc0029867.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00129320 Rroxscaffold_2G00129850 Rroxscaffold_5G00352420 |
| rosa_rugosa | Rorug02G0186500 Rorug04G0081800 Rorug04G0081900 |
| rosa_samantha | Rh2AG241100 Rh2BG255300 Rh2CG245400 Rh2DG249100 Rh4AG147000 Rh4BG144500 Rh4CG153800 Rh4DG141000 |
| rosa_wichuraiana | Rw2G018830 Rw4G012070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 819 |
| AccB1I | GGYRCC | 1 cut(s) | 95 |
| AccI | GTMKAC | 1 cut(s) | 1108 |
| AccII | CGCG | 1 cut(s) | 486 |
| AciI | CCGC | 5 cut(s) | 11, 58, 850, 1130, 1338 |
| AclI | AACGTT | 1 cut(s) | 865 |
| AclWI | GGATC | 6 cut(s) | 369, 778, 912, 917, 974, 989 |
| AcoI | YGGCCR | 2 cut(s) | 109, 1468 |
| AcuI | CTGAAG | 3 cut(s) | 248, 866, 1353 |
| AfaI | GTAC | 5 cut(s) | 107, 477, 614, 1232, 1466 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 50, 849, 1217, 1310, 1352, 1373, 1433, 1439 |
| AflIII | ACRYGT | 2 cut(s) | 666, 1273 |
| AgsI | TTSAA | 8 cut(s) | 121, 160, 353, 408, 532, 829, 1037, 1073 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 670 |
| AjnI | CCWGG | 5 cut(s) | 47, 391, 793, 1213, 1432 |
| AluBI | AGCT | 9 cut(s) | 40, 223, 235, 259, 325, 535, 586, 659, 763 |
| AluI | AGCT | 9 cut(s) | 40, 223, 235, 259, 325, 535, 586, 659, 763 |
| Alw21I | GWGCWC | 1 cut(s) | 712 |
| Alw26I | GTCTC | 3 cut(s) | 776, 1081, 1448 |
| Alw44I | GTGCAC | 1 cut(s) | 708 |
| AlwI | GGATC | 6 cut(s) | 369, 778, 912, 917, 974, 989 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 287 |
| AoxI | GGCC | 7 cut(s) | 109, 376, 617, 791, 839, 1312, 1468 |
| ApaLI | GTGCAC | 1 cut(s) | 708 |
| ApeKI | GCWGC | 5 cut(s) | 40, 60, 631, 1335, 1474 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 192 |
| AspA2I | CCTAGG | 1 cut(s) | 1238 |
| AspLEI | GCGC | 1 cut(s) | 65 |
| AsuC2I | CCSGG | 1 cut(s) | 1316 |
| AsuHPI | GGTGA | 2 cut(s) | 155, 1175 |
| AsuII | TTCGAA | 1 cut(s) | 803 |
| AsuNHI | GCTAGC | 1 cut(s) | 535 |
| AvaII | GGWCC | 8 cut(s) | 284, 653, 1175, 1220, 1355, 1364, 1388, 1424 |
| AvrII | CCTAGG | 1 cut(s) | 1238 |
| BaeGI | GKGCMC | 1 cut(s) | 712 |
| BanI | GGYRCC | 1 cut(s) | 95 |
| BanII | GRGCYC | 3 cut(s) | 56, 453, 1321 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1333, 1365 |
| Bbv12I | GWGCWC | 1 cut(s) | 712 |
| BbvI | GCAGC | 4 cut(s) | 27, 72, 618, 1347 |
| BccI | CCATC | 2 cut(s) | 930, 1168 |
| BceAI | ACGGC | 3 cut(s) | 24, 124, 219 |
| BciT130I | CCWGG | 5 cut(s) | 49, 393, 795, 1215, 1434 |
| BciVI | GTATCC | 2 cut(s) | 159, 1277 |
| BclI | TGATCA | 1 cut(s) | 298 |
| BcnI | CCSGG | 1 cut(s) | 1316 |
| BcoDI | GTCTC | 3 cut(s) | 776, 1081, 1448 |
| BfaI | CTAG | 4 cut(s) | 536, 1179, 1239, 1359 |
| BfoI | RGCGCY | 1 cut(s) | 66 |
| BfuI | GTATCC | 2 cut(s) | 159, 1277 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 838 |
| BisI | GCNGC | 7 cut(s) | 12, 41, 61, 632, 851, 1336, 1475 |
| BlnI | CCTAGG | 1 cut(s) | 1238 |
| BlsI | GCNGC | 7 cut(s) | 13, 42, 62, 633, 852, 1337, 1476 |
| BmcAI | AGTACT | 1 cut(s) | 477 |
| Bme1390I | CCNGG | 6 cut(s) | 49, 393, 795, 1215, 1316, 1434 |
| Bme18I | GGWCC | 8 cut(s) | 284, 653, 1175, 1220, 1355, 1364, 1388, 1424 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 670 |
| BmiI | GGNNCC | 8 cut(s) | 55, 97, 452, 620, 640, 842, 1134, 1320 |
| BmrFI | CCNGG | 6 cut(s) | 49, 393, 795, 1215, 1316, 1434 |
| BmrI | ACTGGG | 1 cut(s) | 456 |
| BmsI | GCATC | 3 cut(s) | 693, 949, 1210 |
| BmtI | GCTAGC | 1 cut(s) | 539 |
| BmuI | ACTGGG | 1 cut(s) | 456 |
| BpmI | CTGGAG | 2 cut(s) | 414, 1236 |
| Bpu14I | TTCGAA | 1 cut(s) | 803 |
| BpuEI | CTTGAG | 2 cut(s) | 347, 1293 |
| BpuMI | CCSGG | 1 cut(s) | 1316 |
| BsaBI | GATNNNNATC | 1 cut(s) | 927 |
| BsaI | GGTCTC | 3 cut(s) | 776, 1081, 1448 |
| BsaJI | CCNNGG | 5 cut(s) | 6, 48, 836, 1238, 1264 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1260, 1290 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 50, 849, 1217, 1310, 1352, 1373, 1433, 1439 |
| Bse118I | RCCGGY | 3 cut(s) | 98, 374, 1470 |
| Bse1I | ACTGG | 4 cut(s) | 145, 451, 794, 960 |
| Bse8I | GATNNNNATC | 1 cut(s) | 927 |
| BseBI | CCWGG | 5 cut(s) | 49, 393, 795, 1215, 1434 |
| BseDI | CCNNGG | 5 cut(s) | 6, 48, 836, 1238, 1264 |
| BseGI | GGATG | 1 cut(s) | 964 |
| BseJI | GATNNNNATC | 1 cut(s) | 927 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 50, 849, 1217, 1310, 1352, 1373, 1433, 1439 |
| BseNI | ACTGG | 4 cut(s) | 145, 451, 794, 960 |
| BseSI | GKGCMC | 1 cut(s) | 712 |
| BseX3I | CGGCCG | 1 cut(s) | 1468 |
| BseXI | GCAGC | 4 cut(s) | 27, 72, 618, 1347 |
| Bsh1236I | CGCG | 1 cut(s) | 486 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1471 |
| BshFI | GGCC | 7 cut(s) | 111, 378, 619, 793, 841, 1314, 1470 |
| BshNI | GGYRCC | 1 cut(s) | 95 |
| BsiEI | CGRYCG | 1 cut(s) | 1471 |
| BsiHKAI | GWGCWC | 1 cut(s) | 712 |
| BsiSI | CCGG | 4 cut(s) | 99, 375, 1315, 1471 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 50, 849, 1217, 1310, 1352, 1373, 1433, 1439 |
| BsmAI | GTCTC | 3 cut(s) | 776, 1081, 1448 |
| BsnI | GGCC | 7 cut(s) | 111, 378, 619, 793, 841, 1314, 1470 |
| Bso31I | GGTCTC | 3 cut(s) | 776, 1081, 1448 |
| Bsp119I | TTCGAA | 1 cut(s) | 803 |
| Bsp1286I | GDGCHC | 4 cut(s) | 56, 453, 712, 1321 |
| Bsp143I | GATC | 9 cut(s) | 24, 298, 361, 385, 770, 904, 922, 979, 994 |
| Bsp68I | TCGCGA | 1 cut(s) | 486 |
| BspACI | CCGC | 5 cut(s) | 11, 58, 850, 1130, 1338 |
| BspANI | GGCC | 7 cut(s) | 111, 378, 619, 793, 841, 1314, 1470 |
| BspFNI | CGCG | 1 cut(s) | 486 |
| BspHI | TCATGA | 2 cut(s) | 241, 364 |
| BspLI | GGNNCC | 8 cut(s) | 55, 97, 452, 620, 640, 842, 1134, 1320 |
| BspOI | GCTAGC | 1 cut(s) | 539 |
| BspPI | GGATC | 6 cut(s) | 369, 778, 912, 917, 974, 989 |
| BspT104I | TTCGAA | 1 cut(s) | 803 |
| BspT107I | GGYRCC | 1 cut(s) | 95 |
| BspTNI | GGTCTC | 3 cut(s) | 776, 1081, 1448 |
| BsrFI | RCCGGY | 3 cut(s) | 98, 374, 1470 |
| BsrI | ACTGG | 4 cut(s) | 145, 451, 794, 960 |
| BssAI | RCCGGY | 3 cut(s) | 98, 374, 1470 |
| BssECI | CCNNGG | 5 cut(s) | 6, 48, 836, 1238, 1264 |
| BssMI | GATC | 9 cut(s) | 24, 298, 361, 385, 770, 904, 922, 979, 994 |
| BssT1I | CCWWGG | 2 cut(s) | 836, 1238 |
| Bst2UI | CCWGG | 5 cut(s) | 49, 393, 795, 1215, 1434 |
| Bst4CI | ACNGT | 4 cut(s) | 461, 1265, 1289, 1464 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 959 |
| BstBI | TTCGAA | 1 cut(s) | 803 |
| BstC8I | GCNNGC | 8 cut(s) | 100, 537, 552, 951, 1007, 1128, 1347, 1472 |
| BstDSI | CCRYGG | 2 cut(s) | 6, 1264 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1215, 1437 |
| BstF5I | GGATG | 1 cut(s) | 964 |
| BstFNI | CGCG | 1 cut(s) | 486 |
| BstH2I | RGCGCY | 1 cut(s) | 66 |
| BstHHI | GCGC | 1 cut(s) | 65 |
| BstKTI | GATC | 9 cut(s) | 27, 301, 364, 388, 773, 907, 925, 982, 997 |
| BstMAI | GTCTC | 3 cut(s) | 776, 1081, 1448 |
| BstMBI | GATC | 9 cut(s) | 24, 298, 361, 385, 770, 904, 922, 979, 994 |
| BstMCI | CGRYCG | 1 cut(s) | 1471 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 60, 69, 108, 838, 847, 950, 959, 1060, 1132 |
| BstNI | CCWGG | 5 cut(s) | 49, 393, 795, 1215, 1434 |
| BstNSI | RCATGY | 5 cut(s) | 106, 670, 1130, 1231, 1277 |
| BstSCI | CCNGG | 6 cut(s) | 47, 391, 793, 1213, 1314, 1432 |
| BstSLI | GKGCMC | 1 cut(s) | 712 |
| BstUI | CGCG | 1 cut(s) | 486 |
| BstV1I | GCAGC | 4 cut(s) | 27, 72, 618, 1347 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1193 |
| BstZI | CGGCCG | 1 cut(s) | 1468 |
| BsuI | GTATCC | 2 cut(s) | 159, 1277 |
| BsuRI | GGCC | 7 cut(s) | 111, 378, 619, 793, 841, 1314, 1470 |
| BtgI | CCRYGG | 2 cut(s) | 6, 1264 |
| BtgZI | GCGATG | 2 cut(s) | 467, 1008 |
| BtsCI | GGATG | 1 cut(s) | 964 |
| BtsIMutI | CAGTG | 2 cut(s) | 953, 1294 |
| BtuMI | TCGCGA | 1 cut(s) | 486 |
| Cac8I | GCNNGC | 8 cut(s) | 100, 537, 552, 951, 1007, 1128, 1347, 1472 |
| CaiI | CAGNNNCTG | 1 cut(s) | 287 |
| CciI | TCATGA | 2 cut(s) | 241, 364 |
| CfoI | GCGC | 1 cut(s) | 65 |
| Cfr10I | RCCGGY | 3 cut(s) | 98, 374, 1470 |
| Csp6I | GTAC | 5 cut(s) | 106, 476, 613, 1231, 1465 |
| CviQI | GTAC | 5 cut(s) | 106, 476, 613, 1231, 1465 |
| DpnI | GATC | 9 cut(s) | 26, 300, 363, 387, 772, 906, 924, 981, 996 |
| DpnII | GATC | 9 cut(s) | 24, 298, 361, 385, 770, 904, 922, 979, 994 |
| DriI | GACNNNNNGTC | 1 cut(s) | 670 |
| EaeI | YGGCCR | 2 cut(s) | 109, 1468 |
| EagI | CGGCCG | 1 cut(s) | 1468 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 670 |
| EclXI | CGGCCG | 1 cut(s) | 1468 |
| Eco130I | CCWWGG | 2 cut(s) | 836, 1238 |
| Eco24I | GRGCYC | 3 cut(s) | 56, 453, 1321 |
| Eco31I | GGTCTC | 3 cut(s) | 776, 1081, 1448 |
| Eco47I | GGWCC | 8 cut(s) | 284, 653, 1175, 1220, 1355, 1364, 1388, 1424 |
| Eco52I | CGGCCG | 1 cut(s) | 1468 |
| Eco57I | CTGAAG | 3 cut(s) | 248, 866, 1353 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1215, 1437 |
| EcoO109I | RGGNCCY | 5 cut(s) | 284, 618, 840, 1364, 1424 |
| EcoRII | CCWGG | 5 cut(s) | 47, 391, 793, 1213, 1432 |
| EcoT14I | CCWWGG | 2 cut(s) | 836, 1238 |
| EcoT38I | GRGCYC | 3 cut(s) | 56, 453, 1321 |
| ErhI | CCWWGG | 2 cut(s) | 836, 1238 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 570, 602 |
| FauI | CCCGC | 1 cut(s) | 65 |
| FbaI | TGATCA | 1 cut(s) | 298 |
| FblI | GTMKAC | 1 cut(s) | 1108 |
| Fnu4HI | GCNGC | 7 cut(s) | 12, 41, 61, 632, 851, 1336, 1475 |
| FokI | GGATG | 1 cut(s) | 971 |
| FriOI | GRGCYC | 3 cut(s) | 56, 453, 1321 |
| Fsp4HI | GCNGC | 7 cut(s) | 12, 41, 61, 632, 851, 1336, 1475 |
| FspBI | CTAG | 4 cut(s) | 536, 1179, 1239, 1359 |
| GlaI | GCGC | 1 cut(s) | 64 |
| GluI | GCNGC | 7 cut(s) | 12, 41, 61, 632, 851, 1336, 1475 |
| GsuI | CTGGAG | 2 cut(s) | 414, 1236 |
| HaeII | RGCGCY | 1 cut(s) | 66 |
| HaeIII | GGCC | 7 cut(s) | 111, 378, 619, 793, 841, 1314, 1470 |
| HapII | CCGG | 4 cut(s) | 99, 375, 1315, 1471 |
| HhaI | GCGC | 1 cut(s) | 65 |
| Hin6I | GCGC | 1 cut(s) | 63 |
| HinP1I | GCGC | 1 cut(s) | 63 |
| HincII | GTYRAC | 4 cut(s) | 664, 915, 1109, 1460 |
| HindII | GTYRAC | 4 cut(s) | 664, 915, 1109, 1460 |
| HindIII | AAGCTT | 3 cut(s) | 221, 233, 323 |
| HinfI | GANTC | 5 cut(s) | 307, 855, 1019, 1243, 1456 |
| HpaI | GTTAAC | 1 cut(s) | 915 |
| HpaII | CCGG | 4 cut(s) | 99, 375, 1315, 1471 |
| HphI | GGTGA | 2 cut(s) | 155, 1175 |
| Hpy166II | GTNNAC | 5 cut(s) | 664, 710, 915, 1109, 1460 |
| Hpy188I | TCNGA | 5 cut(s) | 228, 872, 933, 1248, 1455 |
| Hpy8I | GTNNAC | 5 cut(s) | 664, 710, 915, 1109, 1460 |
| HpyAV | CCTTC | 3 cut(s) | 182, 572, 1377 |
| HpyCH4III | ACNGT | 4 cut(s) | 461, 1265, 1289, 1464 |
| HpyCH4IV | ACGT | 2 cut(s) | 865, 874 |
| HpyCH4V | TGCA | 7 cut(s) | 554, 684, 710, 721, 944, 962, 1208 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 60, 69, 108, 838, 847, 950, 959, 1060, 1132 |
| HpySE526I | ACGT | 2 cut(s) | 865, 874 |
| HspAI | GCGC | 1 cut(s) | 63 |
| KroI | GCCGGC | 2 cut(s) | 98, 1470 |
| KroNI | GCCGGC | 2 cut(s) | 100, 1472 |
| Ksp22I | TGATCA | 1 cut(s) | 298 |
| KspAI | GTTAAC | 1 cut(s) | 915 |
| Kzo9I | GATC | 9 cut(s) | 24, 298, 361, 385, 770, 904, 922, 979, 994 |
| LmnI | GCTCC | 6 cut(s) | 59, 456, 638, 1132, 1324, 1435 |
| Lsp1109I | GCAGC | 4 cut(s) | 27, 72, 618, 1347 |
| LweI | GCATC | 3 cut(s) | 693, 949, 1210 |
| MaeI | CTAG | 4 cut(s) | 536, 1179, 1239, 1359 |
| MaeII | ACGT | 2 cut(s) | 865, 874 |
| MaeIII | GTNAC | 3 cut(s) | 271, 1181, 1376 |
| MalI | GATC | 9 cut(s) | 26, 300, 363, 387, 772, 906, 924, 981, 996 |
| MboI | GATC | 9 cut(s) | 24, 298, 361, 385, 770, 904, 922, 979, 994 |
| MboII | GAAGA | 3 cut(s) | 241, 738, 1085 |
| MhlI | GDGCHC | 4 cut(s) | 56, 453, 712, 1321 |
| MluCI | AATT | 8 cut(s) | 147, 207, 216, 408, 527, 714, 806, 823 |
| MlyI | GAGTC | 2 cut(s) | 864, 1465 |
| MmeI | TCCRAC | 1 cut(s) | 1258 |
| MroNI | GCCGGC | 2 cut(s) | 98, 1470 |
| MroXI | GAANNNNTTC | 1 cut(s) | 192 |
| MseI | TTAA | 5 cut(s) | 219, 255, 443, 468, 914 |
| MslI | CAYNNNNRTG | 2 cut(s) | 341, 1191 |
| MspA1I | CMGCKG | 2 cut(s) | 659, 1338 |
| MspI | CCGG | 4 cut(s) | 99, 375, 1315, 1471 |
| MspR9I | CCNGG | 6 cut(s) | 49, 393, 795, 1215, 1316, 1434 |
| MvaI | CCWGG | 5 cut(s) | 49, 393, 795, 1215, 1434 |
| MvnI | CGCG | 1 cut(s) | 486 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 60, 69, 108, 838, 847, 950, 959, 1060, 1132 |
| NaeI | GCCGGC | 2 cut(s) | 100, 1472 |
| NciI | CCSGG | 1 cut(s) | 1316 |
| NdeII | GATC | 9 cut(s) | 24, 298, 361, 385, 770, 904, 922, 979, 994 |
| NgoMIV | GCCGGC | 2 cut(s) | 98, 1470 |
| NheI | GCTAGC | 1 cut(s) | 535 |
| NlaIV | GGNNCC | 8 cut(s) | 55, 97, 452, 620, 640, 842, 1134, 1320 |
| NmuCI | GTSAC | 1 cut(s) | 1181 |
| NruI | TCGCGA | 1 cut(s) | 486 |
| NspI | RCATGY | 5 cut(s) | 106, 670, 1130, 1231, 1277 |
| NspV | TTCGAA | 1 cut(s) | 803 |
| PaeI | GCATGC | 1 cut(s) | 1130 |
| PagI | TCATGA | 2 cut(s) | 241, 364 |
| PciI | ACATGT | 2 cut(s) | 666, 1273 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 871 |
| PdiI | GCCGGC | 2 cut(s) | 100, 1472 |
| PdmI | GAANNNNTTC | 1 cut(s) | 192 |
| PfeI | GAWTC | 3 cut(s) | 307, 1019, 1243 |
| PflFI | GACNNNGTC | 1 cut(s) | 1179 |
| PfoI | TCCNGGA | 2 cut(s) | 391, 1213 |
| PkrI | GCNGC | 7 cut(s) | 13, 42, 62, 633, 852, 1337, 1476 |
| PleI | GAGTC | 2 cut(s) | 863, 1464 |
| PpsI | GAGTC | 2 cut(s) | 863, 1464 |
| PpuMI | RGGWCCY | 3 cut(s) | 284, 1364, 1424 |
| PscI | ACATGT | 2 cut(s) | 666, 1273 |
| PsiI | TTATAA | 1 cut(s) | 819 |
| Psp1406I | AACGTT | 1 cut(s) | 865 |
| Psp5II | RGGWCCY | 3 cut(s) | 284, 1364, 1424 |
| Psp6I | CCWGG | 5 cut(s) | 47, 391, 793, 1213, 1432 |
| PspGI | CCWGG | 5 cut(s) | 47, 391, 793, 1213, 1432 |
| PspN4I | GGNNCC | 8 cut(s) | 55, 97, 452, 620, 640, 842, 1134, 1320 |
| PspPPI | RGGWCCY | 3 cut(s) | 284, 1364, 1424 |
| PstNI | CAGNNNCTG | 1 cut(s) | 287 |
| PsyI | GACNNNGTC | 1 cut(s) | 1179 |
| PvuII | CAGCTG | 1 cut(s) | 659 |
| RruI | TCGCGA | 1 cut(s) | 486 |
| RsaI | GTAC | 5 cut(s) | 107, 477, 614, 1232, 1466 |
| RsaNI | GTAC | 5 cut(s) | 106, 476, 613, 1231, 1465 |
| RseI | CAYNNNNRTG | 2 cut(s) | 341, 1191 |
| SalI | GTCGAC | 1 cut(s) | 1107 |
| SaqAI | TTAA | 5 cut(s) | 219, 255, 443, 468, 914 |
| SatI | GCNGC | 7 cut(s) | 12, 41, 61, 632, 851, 1336, 1475 |
| Sau3AI | GATC | 9 cut(s) | 24, 298, 361, 385, 770, 904, 922, 979, 994 |
| ScaI | AGTACT | 1 cut(s) | 477 |
| SchI | GAGTC | 2 cut(s) | 864, 1465 |
| ScrFI | CCNGG | 6 cut(s) | 49, 393, 795, 1215, 1316, 1434 |
| SduI | GDGCHC | 4 cut(s) | 56, 453, 712, 1321 |
| SfaNI | GCATC | 3 cut(s) | 693, 949, 1210 |
| SfuI | TTCGAA | 1 cut(s) | 803 |
| SinI | GGWCC | 8 cut(s) | 284, 653, 1175, 1220, 1355, 1364, 1388, 1424 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 341, 1191 |
| SmlI | CTYRAG | 2 cut(s) | 326, 1308 |
| SmoI | CTYRAG | 2 cut(s) | 326, 1308 |
| SphI | GCATGC | 1 cut(s) | 1130 |
| Sse9I | AATT | 8 cut(s) | 147, 207, 216, 408, 527, 714, 806, 823 |
| SsiI | CCGC | 5 cut(s) | 11, 58, 850, 1130, 1338 |
| SspI | AATATT | 1 cut(s) | 250 |
| SspMI | CTAG | 4 cut(s) | 536, 1179, 1239, 1359 |
| StyD4I | CCNGG | 6 cut(s) | 47, 391, 793, 1213, 1314, 1432 |
| StyI | CCWWGG | 2 cut(s) | 836, 1238 |
| TaaI | ACNGT | 4 cut(s) | 461, 1265, 1289, 1464 |
| TaiI | ACGT | 2 cut(s) | 868, 877 |
| TaqI | TCGA | 3 cut(s) | 75, 803, 1108 |
| TasI | AATT | 8 cut(s) | 147, 207, 216, 408, 527, 714, 806, 823 |
| TatI | WGTACW | 1 cut(s) | 475 |
| TauI | GCSGC | 2 cut(s) | 14, 853 |
| TfiI | GAWTC | 3 cut(s) | 307, 1019, 1243 |
| Tru1I | TTAA | 5 cut(s) | 219, 255, 443, 468, 914 |
| Tru9I | TTAA | 5 cut(s) | 219, 255, 443, 468, 914 |
| TscAI | CASTG | 2 cut(s) | 960, 1294 |
| TseFI | GTSAC | 1 cut(s) | 1181 |
| TseI | GCWGC | 5 cut(s) | 40, 60, 631, 1335, 1474 |
| Tsp45I | GTSAC | 1 cut(s) | 1181 |
| TspDTI | ATGAA | 9 cut(s) | 195, 227, 258, 446, 470, 506, 591, 1032, 1160 |
| TspGWI | ACGGA | 1 cut(s) | 1395 |
| TspRI | CASTG | 2 cut(s) | 960, 1294 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1179 |
| VneI | GTGCAC | 1 cut(s) | 708 |
| VpaK11BI | GGWCC | 8 cut(s) | 284, 653, 1175, 1220, 1355, 1364, 1388, 1424 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1215, 1437 |
| XceI | RCATGY | 5 cut(s) | 106, 670, 1130, 1231, 1277 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 933 |
| XmaJI | CCTAGG | 1 cut(s) | 1238 |
| XmiI | GTMKAC | 1 cut(s) | 1108 |
| XmnI | GAANNNNTTC | 1 cut(s) | 192 |
| XspI | CTAG | 4 cut(s) | 536, 1179, 1239, 1359 |
| ZrmI | AGTACT | 1 cut(s) | 477 |