Rw2G018830

Cyclin-dependent kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
24771962 .. 24777222
5261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G018830.1

Sequence Viewer

Length: 1101 bp
ATGACCACGGCGGCATTTGGGCAGATCAACACCGAAGAGCTGCCCACCTGGGGCTCTCGCAGCGCCGATTGCTTCGAGAAAATCAAGCAAATCGGCGCCGGCATGTATGGCCAAGTATTCAAGGCCAGAGAAATCAGAACTGGTGAAATTGTTGCTTTGAAAAGGATACGTATGGATAATGAAAAAGAAGGGTTTCCTATTACAGCAATTCGGGAAATTAAGCTTCTGAAGAAGCTTCATCATGAAAATATTATTAAGCTGAAAGAGATTGTAACTTCTGCAGGTCCTGAAAAGAATGATCAAGAGAATCAAGATAGTAAAAAGCTTGAGGGTGGCATCTATATGGTTTTTGAGTATATGGATCATGATTTGACAGGCCTTGCTGATCGTCCTGGAGTTAGATTTTCAATTCCCCAGATAAAGTGTTATATGAAGCAGTTGTTAACGGGGCTTCATTACTGTCATGTTAATCAAGTACTTCATCGCGACATGAAAGGTTCTAATCTTTTGTTAGATAATGAGGGAAAATTGAAGCTAGCAGACTTTGGGCTCGCAAAATCCTTTGCTACCAACCATGACGGGCAGCTTACAAATCGTGTTATTACCTTGTGGTATAGGCCCCCAGAGTTGCTGCTTGGAGCTACAAAGTATGGACCAGCTGTCGACATGTGGTCTGTTGGTTGCATCTTTGCTGAACTTCTGAATGGTTCGCCAATTTTGCAAGGAAGAACTGAACCTGACCAACTGAACAAGATATTTGAGCTTTGTGGATCGCCTGATGAGAACAACTGGCCTGGTGTTTCAAAATATTATTTTTATAACAATTTCAAGCCACCAAGGCCCCTGAAGCGACGAGTCAGGGAACGTTTCAGACGTTTTGACTGCCATGCTCTTGATTTACTGGACCACTTGTTAACTCTTGATCCAAATCAGGTATTACTTGAGTTTGTTTTATATAAACTCACCGCCATAATTATATCATGTATCAATTATGTTGGGCGTTTTCATATTTTCTTATTAATGATTGAAATATTTTCTTTAGCATCTGATACGTCACTAGCAGTTGCACTGGCATGGTTTGATATCATTCTTTTGGTTTGA

Protein Analysis

366

Amino Acids

41.84

Weight (kDa)

8.07

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 25 - 311 8.3e-65 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 27 - 247 1.6e-27 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 819
Acc36I ACCTGC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 663
AccII CGCG 1 cut(s) 486
AciI CCGC 2 cut(s) 11, 966
AclI AACGTT 1 cut(s) 865
AclWI GGATC 3 cut(s) 369, 778, 917
AcoI YGGCCR 1 cut(s) 109
AcuI CTGAAG 2 cut(s) 248, 866
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 7 cut(s) 121, 160, 408, 532, 804, 829, 1028
AhdI GACNNNNNGTC 2 cut(s) 659, 670
AjnI CCWGG 3 cut(s) 47, 391, 793
AlwI GGATC 3 cut(s) 369, 778, 917
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 6 cut(s) 109, 123, 376, 617, 791, 839
ApeKI GCWGC 4 cut(s) 40, 60, 583, 631
AseI ATTAAT 1 cut(s) 1019
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 2 cut(s) 65, 98
AspS9I GGNCC 5 cut(s) 284, 618, 653, 840, 904
AsuHPI GGTGA 2 cut(s) 155, 955
AsuNHI GCTAGC 1 cut(s) 535
AvaII GGWCC 3 cut(s) 284, 653, 904
BalI TGGCCA 1 cut(s) 111
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 2 cut(s) 56, 552
BbvI GCAGC 4 cut(s) 27, 72, 595, 618
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 3 cut(s) 49, 393, 795
BciVI GTATCC 1 cut(s) 159
BclI TGATCA 1 cut(s) 298
BfaI CTAG 2 cut(s) 536, 1058
BfmI CTRYAG 1 cut(s) 279
BfoI RGCGCY 2 cut(s) 66, 99
BfuAI ACCTGC 1 cut(s) 272
BfuI GTATCC 1 cut(s) 159
BglI GCCNNNNNGGC 1 cut(s) 838
BisI GCNGC 5 cut(s) 12, 41, 61, 584, 632
BlsI GCNGC 5 cut(s) 13, 42, 62, 585, 633
BmcAI AGTACT 1 cut(s) 477
Bme1390I CCNGG 3 cut(s) 49, 393, 795
Bme18I GGWCC 3 cut(s) 284, 653, 904
BmeRI GACNNNNNGTC 2 cut(s) 659, 670
BmgT120I GGNCC 5 cut(s) 284, 618, 653, 840, 904
BmiI GGNNCC 3 cut(s) 97, 620, 842
BmrFI CCNGG 3 cut(s) 49, 393, 795
BmsI GCATC 3 cut(s) 345, 693, 1052
BmtI GCTAGC 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 347, 962
BsaAI YACGTR 1 cut(s) 170
BsaBI GATNNNNATC 1 cut(s) 927
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 6, 48, 836
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 4 cut(s) 145, 794, 906, 1074
Bse8I GATNNNNATC 1 cut(s) 927
BseBI CCWGG 3 cut(s) 49, 393, 795
BseDI CCNNGG 3 cut(s) 6, 48, 836
BseJI GATNNNNATC 1 cut(s) 927
BseLI CCNNNNNNNGG 1 cut(s) 50
BseNI ACTGG 4 cut(s) 145, 794, 906, 1074
BseXI GCAGC 4 cut(s) 27, 72, 595, 618
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 6 cut(s) 111, 125, 378, 619, 793, 841
BshNI GGYRCC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 50
BsnI GGCC 6 cut(s) 111, 125, 378, 619, 793, 841
Bsp1286I GDGCHC 2 cut(s) 56, 552
Bsp143I GATC 6 cut(s) 24, 298, 361, 385, 770, 922
Bsp68I TCGCGA 1 cut(s) 486
BspACI CCGC 2 cut(s) 11, 966
BspANI GGCC 6 cut(s) 111, 125, 378, 619, 793, 841
BspFNI CGCG 1 cut(s) 486
BspHI TCATGA 2 cut(s) 241, 364
BspLI GGNNCC 3 cut(s) 97, 620, 842
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 272
BspOI GCTAGC 1 cut(s) 539
BspPI GGATC 3 cut(s) 369, 778, 917
BspQI GCTCTTC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 4 cut(s) 145, 794, 906, 1074
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 6, 48, 836
BssMI GATC 6 cut(s) 24, 298, 361, 385, 770, 922
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 836
Bst2UI CCWGG 3 cut(s) 49, 393, 795
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 1 cut(s) 30
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 3 cut(s) 100, 537, 552
BstDSI CCRYGG 1 cut(s) 6
BstFNI CGCG 1 cut(s) 486
BstH2I RGCGCY 2 cut(s) 66, 99
BstHHI GCGC 2 cut(s) 65, 98
BstKTI GATC 6 cut(s) 27, 301, 364, 388, 773, 925
BstMBI GATC 6 cut(s) 24, 298, 361, 385, 770, 922
BstMWI GCNNNNNNNGC 6 cut(s) 60, 69, 108, 718, 838, 847
BstNI CCWGG 3 cut(s) 49, 393, 795
BstNSI RCATGY 2 cut(s) 106, 670
BstSCI CCNGG 3 cut(s) 47, 391, 793
BstSFI CTRYAG 1 cut(s) 279
BstSNI TACGTA 1 cut(s) 170
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 4 cut(s) 27, 72, 595, 618
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 6 cut(s) 111, 125, 378, 619, 793, 841
BtgI CCRYGG 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 467
BtsIMutI CAGTG 1 cut(s) 1067
BtuMI TCGCGA 1 cut(s) 486
BveI ACCTGC 1 cut(s) 272
Cac8I GCNNGC 3 cut(s) 100, 537, 552
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 2 cut(s) 241, 364
CfoI GCGC 2 cut(s) 65, 98
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 5 cut(s) 284, 618, 653, 840, 904
Csp6I GTAC 1 cut(s) 476
CviQI GTAC 1 cut(s) 476
DinI GGCGCC 1 cut(s) 97
DpnI GATC 6 cut(s) 26, 300, 363, 387, 772, 924
DpnII GATC 6 cut(s) 24, 298, 361, 385, 770, 922
DriI GACNNNNNGTC 2 cut(s) 659, 670
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 30
Eam1105I GACNNNNNGTC 2 cut(s) 659, 670
EarI CTCTTC 1 cut(s) 30
Eco105I TACGTA 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 836
Eco147I AGGCCT 1 cut(s) 378
Eco24I GRGCYC 2 cut(s) 56, 552
Eco32I GATATC 1 cut(s) 1084
Eco47I GGWCC 3 cut(s) 284, 653, 904
Eco57I CTGAAG 2 cut(s) 248, 866
EcoO109I RGGNCCY 3 cut(s) 284, 618, 840
EcoRII CCWGG 3 cut(s) 47, 391, 793
EcoRV GATATC 1 cut(s) 1084
EcoT14I CCWWGG 1 cut(s) 836
EcoT38I GRGCYC 2 cut(s) 56, 552
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 836
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 5 cut(s) 12, 41, 61, 584, 632
FriOI GRGCYC 2 cut(s) 56, 552
Fsp4HI GCNGC 5 cut(s) 12, 41, 61, 584, 632
FspBI CTAG 2 cut(s) 536, 1058
GlaI GCGC 2 cut(s) 64, 97
GluI GCNGC 5 cut(s) 12, 41, 61, 584, 632
GsuI CTGGAG 1 cut(s) 414
HaeII RGCGCY 2 cut(s) 66, 99
HaeIII GGCC 6 cut(s) 111, 125, 378, 619, 793, 841
HapII CCGG 1 cut(s) 99
HhaI GCGC 2 cut(s) 65, 98
Hin1I GRCGYC 1 cut(s) 96
Hin6I GCGC 2 cut(s) 63, 96
HinP1I GCGC 2 cut(s) 63, 96
HincII GTYRAC 3 cut(s) 444, 664, 915
HindII GTYRAC 3 cut(s) 444, 664, 915
HindIII AAGCTT 3 cut(s) 221, 233, 323
HinfI GANTC 2 cut(s) 307, 855
HpaI GTTAAC 2 cut(s) 444, 915
HpaII CCGG 1 cut(s) 99
HphI GGTGA 2 cut(s) 155, 955
Hpy166II GTNNAC 3 cut(s) 444, 664, 915
Hpy188I TCNGA 5 cut(s) 137, 228, 702, 872, 1048
Hpy8I GTNNAC 3 cut(s) 444, 664, 915
Hpy99I CGWCG 1 cut(s) 855
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 4 cut(s) 169, 865, 874, 1052
HpyCH4V TGCA 4 cut(s) 281, 684, 721, 1067
HpyF10VI GCNNNNNNNGC 6 cut(s) 60, 69, 108, 718, 838, 847
HpySE526I ACGT 4 cut(s) 169, 865, 874, 1052
Hsp92I GRCGYC 1 cut(s) 96
HspAI GCGC 2 cut(s) 63, 96
KasI GGCGCC 1 cut(s) 95
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 298
KspAI GTTAAC 2 cut(s) 444, 915
Kzo9I GATC 6 cut(s) 24, 298, 361, 385, 770, 922
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 638
Lsp1109I GCAGC 4 cut(s) 27, 72, 595, 618
LweI GCATC 3 cut(s) 345, 693, 1052
MaeI CTAG 2 cut(s) 536, 1058
MaeII ACGT 4 cut(s) 169, 865, 874, 1052
MaeIII GTNAC 2 cut(s) 271, 1053
MalI GATC 6 cut(s) 26, 300, 363, 387, 772, 924
MboI GATC 6 cut(s) 24, 298, 361, 385, 770, 922
MboII GAAGA 3 cut(s) 47, 241, 738
MhlI GDGCHC 2 cut(s) 56, 552
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 9 cut(s) 147, 207, 216, 408, 527, 714, 823, 972, 988
MluNI TGGCCA 1 cut(s) 111
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 1 cut(s) 864
MnlI CCTC 2 cut(s) 322, 514
Mox20I TGGCCA 1 cut(s) 111
MroNI GCCGGC 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 192
MscI TGGCCA 1 cut(s) 111
MseI TTAA 6 cut(s) 219, 255, 443, 468, 914, 1019
MslI CAYNNNNRTG 2 cut(s) 341, 1072
Msp20I TGGCCA 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 3 cut(s) 49, 393, 795
MvaI CCWGG 3 cut(s) 49, 393, 795
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 6 cut(s) 60, 69, 108, 718, 838, 847
NaeI GCCGGC 1 cut(s) 100
NarI GGCGCC 1 cut(s) 96
NdeII GATC 6 cut(s) 24, 298, 361, 385, 770, 922
NgoMIV GCCGGC 1 cut(s) 98
NheI GCTAGC 1 cut(s) 535
NlaIV GGNNCC 3 cut(s) 97, 620, 842
NmuCI GTSAC 1 cut(s) 1053
NruI TCGCGA 1 cut(s) 486
NspI RCATGY 2 cut(s) 106, 670
PagI TCATGA 2 cut(s) 241, 364
PceI AGGCCT 1 cut(s) 378
PciI ACATGT 1 cut(s) 666
PciSI GCTCTTC 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 871
PdiI GCCGGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 391
PkrI GCNGC 5 cut(s) 13, 42, 62, 585, 633
PleI GAGTC 1 cut(s) 863
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 863
Ppu21I YACGTR 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 284
PscI ACATGT 1 cut(s) 666
PshBI ATTAAT 1 cut(s) 1019
PsiI TTATAA 1 cut(s) 819
Psp1406I AACGTT 1 cut(s) 865
Psp5II RGGWCCY 1 cut(s) 284
Psp6I CCWGG 3 cut(s) 47, 391, 793
PspGI CCWGG 3 cut(s) 47, 391, 793
PspN4I GGNNCC 3 cut(s) 97, 620, 842
PspPI GGNCC 5 cut(s) 284, 618, 653, 840, 904
PspPPI RGGWCCY 1 cut(s) 284
PstI CTGCAG 1 cut(s) 283
PstNI CAGNNNCTG 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 659
RruI TCGCGA 1 cut(s) 486
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
RseI CAYNNNNRTG 2 cut(s) 341, 1072
SalI GTCGAC 1 cut(s) 662
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 6 cut(s) 219, 255, 443, 468, 914, 1019
SatI GCNGC 5 cut(s) 12, 41, 61, 584, 632
Sau3AI GATC 6 cut(s) 24, 298, 361, 385, 770, 922
Sau96I GGNCC 5 cut(s) 284, 618, 653, 840, 904
ScaI AGTACT 1 cut(s) 477
SchI GAGTC 1 cut(s) 864
ScrFI CCNGG 3 cut(s) 49, 393, 795
SduI GDGCHC 2 cut(s) 56, 552
SfaNI GCATC 3 cut(s) 345, 693, 1052
SfcI CTRYAG 1 cut(s) 279
SfoI GGCGCC 1 cut(s) 97
SinI GGWCC 3 cut(s) 284, 653, 904
SmiMI CAYNNNNRTG 2 cut(s) 341, 1072
SmlI CTYRAG 2 cut(s) 326, 941
SmoI CTYRAG 2 cut(s) 326, 941
SnaBI TACGTA 1 cut(s) 170
Sse9I AATT 9 cut(s) 147, 207, 216, 408, 527, 714, 823, 972, 988
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 2 cut(s) 11, 966
SspDI GGCGCC 1 cut(s) 95
SspI AATATT 3 cut(s) 250, 809, 1032
SspMI CTAG 2 cut(s) 536, 1058
StuI AGGCCT 1 cut(s) 378
StyD4I CCNGG 3 cut(s) 47, 391, 793
StyI CCWWGG 1 cut(s) 836
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 4 cut(s) 172, 868, 877, 1055
TaqI TCGA 2 cut(s) 75, 663
TasI AATT 9 cut(s) 147, 207, 216, 408, 527, 714, 823, 972, 988
TatI WGTACW 1 cut(s) 475
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 6 cut(s) 219, 255, 443, 468, 914, 1019
Tru9I TTAA 6 cut(s) 219, 255, 443, 468, 914, 1019
TscAI CASTG 1 cut(s) 1074
TseFI GTSAC 1 cut(s) 1053
TseI GCWGC 4 cut(s) 40, 60, 583, 631
Tsp45I GTSAC 1 cut(s) 1053
TspDTI ATGAA 8 cut(s) 195, 227, 258, 443, 446, 470, 506, 995
TspRI CASTG 1 cut(s) 1074
VpaK11BI GGWCC 3 cut(s) 284, 653, 904
VspI ATTAAT 1 cut(s) 1019
XceI RCATGY 2 cut(s) 106, 670
XmiI GTMKAC 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 2 cut(s) 536, 1058
ZrmI AGTACT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.