Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002129

Physical Location & Seq

Genomic Coordinates Reverse (-)

12527271 .. 12528086

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0081900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAGGTGATCATTGATACTCTGGTAATTTGCGGTTGCTTAGTGTTTGGTGGTAGTGTGATCAAAAGAGTACTCTGTAGCAGACCCAGACCCAGACCCTGGGAGACATTACCTGACGATGTCATGGAGATGGTTGTGCGGCACCTGAGTGTACGTGATCGTATACGATTAAGCAGTGTTTGCAAGTCTTGGAACACCGTTCCTATGCGCAGAGATATCCCTAGTGCTCCACATCAACTCCCCTGGTTAATACTTCCTCAATGTTGCCATAAGAGCTTGAGCTTTTTCGACCTCTATGACGGCAAAGTTGGCAAGTTGGACCTGCCTGAACCAGTTCAAGGAGGGTGGTTTCAAGGATCTTCTAAAGGTTGGATGATCATGGTCATGGAAAAAGATCTAGATTCTACAATGTTTGTAGTAAATCCCATTTCAGGAGCCCAACACCAACTTCCATCTTTGAGCACGGTTCCATCTTTCCAAAATTTTGTAGAAACGAGCAGATGGAAACGCTATGGTGCCTCCCGTTTCAGCTATTACCTTGTGTTGTTCACCTCGGATATCACTTCAGAGCAATGTATGATAGCAGCTATGTTTGGAGACGCTGAAACATTGTGTTTGTGCAGACCTGGAGACACGAGTTGGAGTATTTGCGAGGTGGCCTTAGATGCGAATGAGGTCATGATTACGGATTTATTGTTTTCTTCTGGCAAGCTATATGCCTTGGTTCTTAGTCATGATCAGGAAGGCTTTATGTCAGCTCCTAATACTTTAAGTTGTGGAGGTCATATATGCAGTGGAATTATATCTGGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

271

Amino Acids

30.2

Weight (kDa)

5.86

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	34 - 66	1.8e-09	F-box domain
F-box-like	PF12937	34 - 66	8.2e-08	F-box-like
Beta-prop_KIB1-4	PF03478	95 - 244	1.4e-20	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10270 AT5G64960 AT5G64960
fragaria_vesca	FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_4g11370 FvH4_4g11370 FvH4_4g11370
malus_domestica	MD04G1037600.v1.1 MD15G1318300.v1.1
prunus_persica	Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.6G187600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0113361 RchiOBHm_Chr2g0113381 RchiOBHm_Chr4g0407881
rosa_laevigata	RLG00000008692 RLG00000018058
rosa_multiflora	Rmu_sc0002073.1_g000029 Rmu_sc0007621.1_g000001 Rmu_sc0011967.1_g000006 Rmu_sc0029075.1_g000002 Rmu_sc0029867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129320 Rroxscaffold_2G00129850 Rroxscaffold_5G00352420
rosa_rugosa	Rorug02G0186500 Rorug04G0081800 Rorug04G0081900
rosa_samantha	Rh2AG241100 Rh2BG255300 Rh2CG245400 Rh2DG249100 Rh4AG147000 Rh4BG144500 Rh4CG153800 Rh4DG141000
rosa_wichuraiana	Rw2G018830 Rw4G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	330
AccB1I	GGYRCC	2 cut(s)	141, 515
AccB7I	CCANNNNNTGG	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	163
AciI	CCGC	2 cut(s)	33, 139
AclWI	GGATC	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	2 cut(s)	72, 153
AfiI	CCNNNNNNNGG	3 cut(s)	99, 338, 431
AgsI	TTSAA	2 cut(s)	338, 353
AjnI	CCWGG	3 cut(s)	98, 242, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	6 cut(s)	276, 282, 531, 587, 712, 758
AluI	AGCT	6 cut(s)	276, 282, 531, 587, 712, 758
Alw21I	GWGCWC	2 cut(s)	229, 464
Alw26I	GTCTC	3 cut(s)	98, 591, 624
AlwI	GGATC	1 cut(s)	364
AlwNI	CAGNNNCTG	1 cut(s)	99
AoxI	GGCC	1 cut(s)	657
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	1 cut(s)	481
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	2 cut(s)	19, 541
AvaII	GGWCC	1 cut(s)	319
BaeI	ACNNNNGTAYC	2 cut(s)	9, 42
BanI	GGYRCC	2 cut(s)	141, 515
BanII	GRGCYC	1 cut(s)	439
BauI	CACGAG	1 cut(s)	634
Bbv12I	GWGCWC	2 cut(s)	229, 464
BbvI	GCAGC	1 cut(s)	596
BccI	CCATC	4 cut(s)	124, 460, 478, 495
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	3 cut(s)	100, 244, 627
BclI	TGATCA	4 cut(s)	9, 60, 375, 736
BcoDI	GTCTC	3 cut(s)	98, 591, 624
BfaI	CTAG	2 cut(s)	222, 398
BfmI	CTRYAG	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	330
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	2 cut(s)	140, 585
BlsI	GCNGC	2 cut(s)	141, 586
BmcAI	AGTACT	1 cut(s)	72
Bme1390I	CCNGG	3 cut(s)	100, 244, 627
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	4 cut(s)	143, 436, 468, 517
BmrFI	CCNGG	3 cut(s)	100, 244, 627
BmsI	GCATC	1 cut(s)	655
BpmI	CTGGAG	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	298
BsaAI	YACGTR	1 cut(s)	155
BsaJI	CCNNGG	5 cut(s)	98, 99, 242, 552, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 338, 431
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	578
BseBI	CCWGG	3 cut(s)	100, 244, 627
BseDI	CCNNGG	5 cut(s)	98, 99, 242, 552, 720
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	3 cut(s)	99, 338, 431
BseMI	GCAATG	1 cut(s)	578
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	596
BsgI	GTGCAG	1 cut(s)	640
BshFI	GGCC	1 cut(s)	659
BshNI	GGYRCC	2 cut(s)	141, 515
BsiHKAI	GWGCWC	2 cut(s)	229, 464
BslI	CCNNNNNNNGG	3 cut(s)	99, 338, 431
BsmAI	GTCTC	3 cut(s)	98, 591, 624
BsmBI	CGTCTC	1 cut(s)	591
BsnI	GGCC	1 cut(s)	659
Bsp1286I	GDGCHC	3 cut(s)	229, 439, 464
Bsp143I	GATC	7 cut(s)	9, 60, 157, 356, 375, 394, 736
BspACI	CCGC	2 cut(s)	33, 139
BspANI	GGCC	1 cut(s)	659
BspCNI	CTCAG	1 cut(s)	138
BspHI	TCATGA	2 cut(s)	678, 733
BspLI	GGNNCC	4 cut(s)	143, 436, 468, 517
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	364
BspT107I	GGYRCC	2 cut(s)	141, 515
BsrDI	GCAATG	1 cut(s)	578
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	5 cut(s)	98, 99, 242, 552, 720
BssMI	GATC	7 cut(s)	9, 60, 157, 356, 375, 394, 736
BssNAI	GTATAC	1 cut(s)	164
BssSI	CACGAG	1 cut(s)	634
BssT1I	CCWWGG	1 cut(s)	720
Bst1107I	GTATAC	1 cut(s)	164
Bst2BI	CACGAG	1 cut(s)	634
Bst2UI	CCWGG	3 cut(s)	100, 244, 627
Bst4CI	ACNGT	2 cut(s)	199, 466
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	710
BstDEI	CTNAG	4 cut(s)	40, 146, 661, 728
BstF5I	GGATG	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	7 cut(s)	12, 63, 160, 359, 378, 397, 739
BstMAI	GTCTC	3 cut(s)	98, 591, 624
BstMBI	GATC	7 cut(s)	9, 60, 157, 356, 375, 394, 736
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 273, 309, 665
BstNI	CCWGG	3 cut(s)	100, 244, 627
BstSCI	CCNGG	3 cut(s)	98, 242, 625
BstSFI	CTRYAG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	596
BstX2I	RGATCY	2 cut(s)	356, 394
BstYI	RGATCY	2 cut(s)	356, 394
BstZ17I	GTATAC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	659
BtsCI	GGATG	1 cut(s)	378
BtsI	GCAGTG	2 cut(s)	181, 799
BtsIMutI	CAGTG	2 cut(s)	181, 799
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	710
CaiI	CAGNNNCTG	1 cut(s)	99
CciI	TCATGA	2 cut(s)	678, 733
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	2 cut(s)	71, 152
CspCI	CAANNNNNGTGG	2 cut(s)	326, 361
CviAII	CATG	5 cut(s)	124, 379, 385, 679, 734
CviJI	RGCY	9 cut(s)	276, 282, 437, 531, 587, 659, 712, 747, 758
CviKI_1	RGCY	9 cut(s)	276, 282, 437, 531, 587, 659, 712, 747, 758
CviQI	GTAC	2 cut(s)	71, 152
DdeI	CTNAG	4 cut(s)	40, 146, 661, 728
DpnI	GATC	7 cut(s)	11, 62, 159, 358, 377, 396, 738
DpnII	GATC	7 cut(s)	9, 60, 157, 356, 375, 394, 736
Eco130I	CCWWGG	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	439
Eco32I	GATATC	2 cut(s)	217, 559
Eco47I	GGWCC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	549
EcoRII	CCWGG	3 cut(s)	98, 242, 625
EcoRV	GATATC	2 cut(s)	217, 559
EcoT14I	CCWWGG	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	720
Esp3I	CGTCTC	1 cut(s)	591
FaeI	CATG	5 cut(s)	127, 382, 388, 682, 737
FatI	CATG	5 cut(s)	123, 378, 384, 678, 733
FbaI	TGATCA	4 cut(s)	9, 60, 375, 736
FblI	GTMKAC	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	140, 585
FokI	GGATG	1 cut(s)	385
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	2 cut(s)	140, 585
FspBI	CTAG	2 cut(s)	222, 398
FspI	TGCGCA	1 cut(s)	209
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	2 cut(s)	140, 585
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	1 cut(s)	659
HgaI	GACGC	1 cut(s)	608
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	5 cut(s)	127, 382, 388, 682, 737
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HinfI	GANTC	1 cut(s)	401
HphI	GGTGA	2 cut(s)	19, 541
Hpy166II	GTNNAC	3 cut(s)	152, 164, 549
Hpy188I	TCNGA	2 cut(s)	556, 568
Hpy188III	TCNNGA	5 cut(s)	398, 432, 679, 734, 740
Hpy8I	GTNNAC	3 cut(s)	152, 164, 549
HpyAV	CCTTC	1 cut(s)	737
HpyCH4III	ACNGT	2 cut(s)	199, 466
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	3 cut(s)	183, 621, 792
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 273, 309, 665
HpyF3I	CTNAG	4 cut(s)	40, 146, 661, 728
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	5 cut(s)	127, 382, 388, 682, 737
HspAI	GCGC	1 cut(s)	208
Ksp22I	TGATCA	4 cut(s)	9, 60, 375, 736
Kzo9I	GATC	7 cut(s)	9, 60, 157, 356, 375, 394, 736
LmnI	GCTCC	3 cut(s)	232, 434, 763
Lsp1109I	GCAGC	1 cut(s)	596
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	2 cut(s)	222, 398
MaeII	ACGT	1 cut(s)	154
MalI	GATC	7 cut(s)	11, 62, 159, 358, 377, 396, 738
MboI	GATC	7 cut(s)	9, 60, 157, 356, 375, 394, 736
MboII	GAAGA	2 cut(s)	351, 693
MflI	RGATCY	2 cut(s)	356, 394
MhlI	GDGCHC	3 cut(s)	229, 439, 464
MluCI	AATT	3 cut(s)	27, 481, 798
MmeI	TCCRAC	3 cut(s)	297, 350, 620
MnlI	CCTC	8 cut(s)	267, 302, 335, 529, 562, 646, 667, 773
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	3 cut(s)	170, 248, 770
MslI	CAYNNNNRTG	3 cut(s)	128, 147, 383
MspR9I	CCNGG	3 cut(s)	100, 244, 627
MvaI	CCWGG	3 cut(s)	100, 244, 627
MwoI	GCNNNNNNNGC	4 cut(s)	180, 273, 309, 665
NdeII	GATC	7 cut(s)	9, 60, 157, 356, 375, 394, 736
NlaIII	CATG	5 cut(s)	127, 382, 388, 682, 737
NlaIV	GGNNCC	4 cut(s)	143, 436, 468, 517
NsbI	TGCGCA	1 cut(s)	209
OliI	CACNNNNGTG	1 cut(s)	147
PagI	TCATGA	2 cut(s)	678, 733
PasI	CCCWGGG	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	401
PflFI	GACNNNGTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	99
PkrI	GCNGC	2 cut(s)	141, 586
Ppu21I	YACGTR	1 cut(s)	155
Psp6I	CCWGG	3 cut(s)	98, 242, 625
PspGI	CCWGG	3 cut(s)	98, 242, 625
PspN4I	GGNNCC	4 cut(s)	143, 436, 468, 517
PspPI	GGNCC	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	99
PsuI	RGATCY	2 cut(s)	356, 394
PsyI	GACNNNGTC	1 cut(s)	119
RsaI	GTAC	2 cut(s)	72, 153
RsaNI	GTAC	2 cut(s)	71, 152
RseI	CAYNNNNRTG	3 cut(s)	128, 147, 383
SaqAI	TTAA	3 cut(s)	170, 248, 770
SatI	GCNGC	2 cut(s)	140, 585
Sau3AI	GATC	7 cut(s)	9, 60, 157, 356, 375, 394, 736
Sau96I	GGNCC	1 cut(s)	319
ScaI	AGTACT	1 cut(s)	72
ScrFI	CCNGG	3 cut(s)	100, 244, 627
SduI	GDGCHC	3 cut(s)	229, 439, 464
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	3 cut(s)	128, 147, 383
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	3 cut(s)	27, 481, 798
SsiI	CCGC	2 cut(s)	33, 139
SspMI	CTAG	2 cut(s)	222, 398
StyD4I	CCNGG	3 cut(s)	98, 242, 625
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	2 cut(s)	199, 466
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	288
TasI	AATT	3 cut(s)	27, 481, 798
TatI	WGTACW	1 cut(s)	70
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	3 cut(s)	170, 248, 770
Tru9I	TTAA	3 cut(s)	170, 248, 770
TscAI	CASTG	2 cut(s)	181, 799
TseI	GCWGC	1 cut(s)	584
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	2 cut(s)	181, 799
Tth111I	GACNNNGTC	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	1 cut(s)	481
XbaI	TCTAGA	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	2 cut(s)	222, 398
ZrmI	AGTACT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.