Prupe.6G187600_v2.0.a1

Cyclin-dependent kinase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
19600920 .. 19607686
6767 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G187600.1

Sequence Viewer

Length: 1524 bp
ATGGCTTCGGCGGCAGCCGGGCAGATAAACACCGAAGAGTTACATTCATGGGGATCTCGAAGCGTCGACTGCTTTGAGAAACTCGAGCAAATTGGCGAAGGCACTTATGGTCAAGTGTTCATGGCCAGAGAAACCCGAACTGGGGAAATTGTTGCTTTGAAAAAGATACGCATGGATAATGAAAAAGAAGGGTTCCCAATTACAGCAATCCGGGAAATTAAAATTCTGAAAAAGCTTCATCATGAAAATGTTGTTAAGCTGAAAGAGATTGTAACTTCCACAGGTCCTGAAGGGGATGAGCAAGGGAATCAAGATGGTAATAAGTCCAAGGGTGGCATCTATATGGTTTTTGAGTATATGGATCACGATTTGACAGGCCTTGCTGATCGTCCTGGACTGAGATTTACAGTTCCCCAGATAAAGTGTTATATGAAGCAGCTATTGACTGGGCTACATTACTGTCATGTTAATCAAGTACTTCATCGTGACATCAAAGGTTCTAATCTTTTGATAGATAATGAGGGGAAGTTGAAGCTAGCAGACTTTGGGCTTGCAAGGTCCTTTTGTAGTAACCATGAGGGAAATCTTACAAATCGTGTCATAACTTTGTGGTATAGGCCCCCAGAGTTGCTGCTTGGAGCCACAAAGTATGGTCCAGCTGTTGACATTTGGTCTGTTGGTTGCATCTTTGCTGAACTTCTGCATGGAAAACCAATTTTGCAAGGAAGAAGTGAACCTGACCAACTGAACAAAATATTTGAGCTCTGTGGATCGCCTGACGAGATCAACTGGCCTGATGTGTCAAAAAGTCCTTGGTATAATAACTTCAAGCCAACAAGGACCATGAAAAGACGAGTCAGGGAAATTTTCAGACATTTTGACTCCCATGCTTTGGATCTATTGGACCACTTGTTAGCTCTTGATCCAAATCAGAGATGGACTGCAAAGCAAGCACTGGATGCAGAGTATTTCTGGGCTGACCCTTTACCCTGTGATCCGAAGAGCCTACCTAAGTATGAATCATCACACGAATTCCAAACAAAGAAAAAGAAGCAGCAGCGGCGGCAAACTGAAGAAATAACAAAGGGATCAAAGTCACAGTATTATCATAAGCATTATCGCCTGCCTCCAATTCAACATACAGGGCAAGCTCCTCCACAGTGGTACGGGCCCAATCATCCAATAAACGATGCTCAGCCCCCATTATCAGCTGGACCAAGTCACCACCACTACGGAAAACCGCACGGTCCTCCTGGAGGTCCAAGCAGGTACCCTCCTGGAAACCAGGGTGGACCTTACCACCTAAATCGCGGAGGTCAAGTTGGAGGTTACAGTGGTGGACCATATCCACCCCAAGGACGAGCTCCACCATATGCTGGGAGTGGCATGGCGGCCCCTAGCTCTAGAGGAGCCCCTGGTGGTTATGGAGTCGGTCCTCCCAACTACTCCCAGACTAATCAATATGGAATTCCTGCTGCTGGTAGGGGTGTTATTATCCGAAATCAACAGTATGGTCGGCAGTAG

Protein Analysis

508

Amino Acids

56.65

Weight (kDa)

9.08

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1257
Acc65I GGTACC 1 cut(s) 1269
AccB1I GGYRCC 1 cut(s) 1269
AccB7I CCANNNNNTGG 2 cut(s) 892, 1376
AccI GTMKAC 1 cut(s) 66
AccII CGCG 1 cut(s) 1311
AciI CCGC 6 cut(s) 11, 1060, 1063, 1241, 1311, 1391
AclWI GGATC 7 cut(s) 61, 369, 778, 903, 917, 989, 1096
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 4 cut(s) 222, 864, 1031, 1467
AcuI CTGAAG 2 cut(s) 309, 1092
AfaI GTAC 3 cut(s) 477, 1166, 1271
AfiI CCNNNNNNNGG 7 cut(s) 141, 142, 892, 1256, 1355, 1376, 1478
AgsI TTSAA 4 cut(s) 160, 532, 829, 1136
AhdI GACNNNNNGTC 1 cut(s) 670
AjnI CCWGG 5 cut(s) 391, 1252, 1276, 1284, 1414
Alw21I GWGCWC 2 cut(s) 765, 1366
AlwI GGATC 7 cut(s) 61, 369, 778, 903, 917, 989, 1096
AlwNI CAGNNNCTG 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 6 cut(s) 123, 376, 617, 791, 1169, 1392
ApaI GGGCCC 1 cut(s) 1173
ApeKI GCWGC 6 cut(s) 14, 436, 631, 1054, 1057, 1475
ApoI RAATTY 4 cut(s) 222, 864, 1031, 1467
Asp718I GGTACC 1 cut(s) 1269
AsuC2I CCSGG 2 cut(s) 19, 212
AsuHPI GGTGA 1 cut(s) 1214
AsuNHI GCTAGC 1 cut(s) 535
AvaI CYCGRG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 1173
BalI TGGCCA 1 cut(s) 125
BanI GGYRCC 1 cut(s) 1269
BanII GRGCYC 4 cut(s) 765, 1173, 1366, 1414
BarI GAAGNNNNNNTAC 2 cut(s) 809, 841
Bbv12I GWGCWC 2 cut(s) 765, 1366
BbvI GCAGC 6 cut(s) 26, 448, 618, 1066, 1069, 1462
BccI CCATC 2 cut(s) 308, 930
BciT130I CCWGG 5 cut(s) 393, 1254, 1278, 1286, 1416
BcnI CCSGG 2 cut(s) 19, 212
BfaI CTAG 3 cut(s) 536, 1398, 1404
BfuAI ACCTGC 1 cut(s) 1257
BlpI GCTNAGC 1 cut(s) 1194
BmcAI AGTACT 1 cut(s) 477
Bme1390I CCNGG 7 cut(s) 19, 212, 393, 1254, 1278, 1286, 1416
BmeRI GACNNNNNGTC 1 cut(s) 670
BmeT110I CYCGRG 1 cut(s) 83
BmiI GGNNCC 7 cut(s) 194, 620, 640, 1171, 1271, 1395, 1411
BmrFI CCNGG 7 cut(s) 19, 212, 393, 1254, 1278, 1286, 1416
BmrI ACTGGG 2 cut(s) 150, 456
BmsI GCATC 4 cut(s) 345, 693, 949, 1180
BmtI GCTAGC 1 cut(s) 539
BmuI ACTGGG 2 cut(s) 150, 456
BpmI CTGGAG 1 cut(s) 1275
Bpu1102I GCTNAGC 1 cut(s) 1194
BpuMI CCSGG 2 cut(s) 19, 212
BsaBI GATNNNNATC 1 cut(s) 927
BsaJI CCNNGG 5 cut(s) 327, 812, 1285, 1354, 1414
BsaXI ACNNNNNCTCC 2 cut(s) 1305, 1335
Bsc4I CCNNNNNNNGG 7 cut(s) 141, 142, 892, 1256, 1355, 1376, 1478
Bse1I ACTGG 4 cut(s) 145, 451, 794, 960
Bse8I GATNNNNATC 1 cut(s) 927
BseBI CCWGG 5 cut(s) 393, 1254, 1278, 1286, 1416
BseDI CCNNGG 5 cut(s) 327, 812, 1285, 1354, 1414
BseGI GGATG 3 cut(s) 301, 964, 1177
BseJI GATNNNNATC 1 cut(s) 927
BseLI CCNNNNNNNGG 7 cut(s) 141, 142, 892, 1256, 1355, 1376, 1478
BseMII CTCAG 2 cut(s) 389, 1208
BseNI ACTGG 4 cut(s) 145, 451, 794, 960
BseRI GAGGAG 2 cut(s) 1143, 1422
BseSI GKGCMC 1 cut(s) 1173
BseXI GCAGC 6 cut(s) 26, 448, 618, 1066, 1069, 1462
BseYI CCCAGC 1 cut(s) 1376
Bsh1236I CGCG 1 cut(s) 1311
BshFI GGCC 6 cut(s) 125, 378, 619, 793, 1171, 1394
BshNI GGYRCC 1 cut(s) 1269
BsiHKAI GWGCWC 2 cut(s) 765, 1366
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 18, 211
BslI CCNNNNNNNGG 7 cut(s) 141, 142, 892, 1256, 1355, 1376, 1478
BsnI GGCC 6 cut(s) 125, 378, 619, 793, 1171, 1394
BsoBI CYCGRG 1 cut(s) 83
Bsp120I GGGCCC 1 cut(s) 1169
Bsp1286I GDGCHC 4 cut(s) 765, 1173, 1366, 1414
Bsp143I GATC 9 cut(s) 53, 361, 385, 770, 783, 895, 922, 994, 1088
Bsp1720I GCTNAGC 1 cut(s) 1194
BspACI CCGC 6 cut(s) 11, 1060, 1063, 1241, 1311, 1391
BspANI GGCC 6 cut(s) 125, 378, 619, 793, 1171, 1394
BspCNI CTCAG 2 cut(s) 390, 1207
BspFNI CGCG 1 cut(s) 1311
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 7 cut(s) 194, 620, 640, 1171, 1271, 1395, 1411
BspMI ACCTGC 1 cut(s) 1257
BspOI GCTAGC 1 cut(s) 539
BspPI GGATC 7 cut(s) 61, 369, 778, 903, 917, 989, 1096
BspQI GCTCTTC 1 cut(s) 995
BspT107I GGYRCC 1 cut(s) 1269
BsrI ACTGG 4 cut(s) 145, 451, 794, 960
BssECI CCNNGG 5 cut(s) 327, 812, 1285, 1354, 1414
BssMI GATC 9 cut(s) 53, 361, 385, 770, 783, 895, 922, 994, 1088
BssT1I CCWWGG 3 cut(s) 327, 812, 1354
Bst2UI CCWGG 5 cut(s) 393, 1254, 1278, 1286, 1416
Bst4CI ACNGT 7 cut(s) 409, 461, 1101, 1161, 1247, 1334, 1509
Bst6I CTCTTC 2 cut(s) 30, 995
BstAPI GCANNNNNTGC 1 cut(s) 959
BstC8I GCNNGC 5 cut(s) 537, 552, 951, 1124, 1149
BstDEI CTNAG 3 cut(s) 398, 1011, 1194
BstENI CCTNNNNNAGG 1 cut(s) 1254
BstF5I GGATG 3 cut(s) 301, 964, 1177
BstFNI CGCG 1 cut(s) 1311
BstKTI GATC 9 cut(s) 56, 364, 388, 773, 786, 898, 925, 997, 1091
BstMBI GATC 9 cut(s) 53, 361, 385, 770, 783, 895, 922, 994, 1088
BstMWI GCNNNNNNNGC 6 cut(s) 11, 69, 950, 959, 1060, 1063
BstNI CCWGG 5 cut(s) 393, 1254, 1278, 1286, 1416
BstSCI CCNGG 7 cut(s) 17, 210, 391, 1252, 1276, 1284, 1414
BstSLI GKGCMC 1 cut(s) 1173
BstUI CGCG 1 cut(s) 1311
BstV1I GCAGC 6 cut(s) 26, 448, 618, 1066, 1069, 1462
BstX2I RGATCY 2 cut(s) 53, 895
BstYI RGATCY 2 cut(s) 53, 895
BsuRI GGCC 6 cut(s) 125, 378, 619, 793, 1171, 1394
BtsCI GGATG 3 cut(s) 301, 964, 1177
BtsIMutI CAGTG 3 cut(s) 953, 1166, 1339
BveI ACCTGC 1 cut(s) 1257
Cac8I GCNNGC 5 cut(s) 537, 552, 951, 1124, 1149
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 1 cut(s) 241
CseI GACGC 1 cut(s) 52
Csp6I GTAC 3 cut(s) 476, 1165, 1270
CviQI GTAC 3 cut(s) 476, 1165, 1270
DdeI CTNAG 3 cut(s) 398, 1011, 1194
DpnI GATC 9 cut(s) 55, 363, 387, 772, 785, 897, 924, 996, 1090
DpnII GATC 9 cut(s) 53, 361, 385, 770, 783, 895, 922, 994, 1088
DriI GACNNNNNGTC 1 cut(s) 670
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 2 cut(s) 30, 995
Eam1105I GACNNNNNGTC 1 cut(s) 670
EarI CTCTTC 2 cut(s) 30, 995
Ecl136II GAGCTC 2 cut(s) 763, 1364
Eco130I CCWWGG 3 cut(s) 327, 812, 1354
Eco147I AGGCCT 1 cut(s) 378
Eco24I GRGCYC 4 cut(s) 765, 1173, 1366, 1414
Eco53kI GAGCTC 2 cut(s) 763, 1364
Eco57I CTGAAG 2 cut(s) 309, 1092
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 2 cut(s) 763, 1364
EcoNI CCTNNNNNAGG 1 cut(s) 1254
EcoO109I RGGNCCY 3 cut(s) 284, 558, 618
EcoRI GAATTC 2 cut(s) 1031, 1467
EcoRII CCWGG 5 cut(s) 391, 1252, 1276, 1284, 1414
EcoT14I CCWWGG 3 cut(s) 327, 812, 1354
EcoT38I GRGCYC 4 cut(s) 765, 1173, 1366, 1414
ErhI CCWWGG 3 cut(s) 327, 812, 1354
FauNDI CATATG 1 cut(s) 1372
FblI GTMKAC 1 cut(s) 66
FokI GGATG 3 cut(s) 308, 971, 1164
FriOI GRGCYC 4 cut(s) 765, 1173, 1366, 1414
FspBI CTAG 3 cut(s) 536, 1398, 1404
GsaI CCCAGC 1 cut(s) 1380
GsuI CTGGAG 1 cut(s) 1275
HaeIII GGCC 6 cut(s) 125, 378, 619, 793, 1171, 1394
HapII CCGG 2 cut(s) 18, 211
HgaI GACGC 1 cut(s) 52
HincII GTYRAC 2 cut(s) 67, 664
HindII GTYRAC 2 cut(s) 67, 664
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 5 cut(s) 307, 855, 881, 1019, 1428
HpaII CCGG 2 cut(s) 18, 211
HphI GGTGA 1 cut(s) 1214
Hpy166II GTNNAC 5 cut(s) 67, 664, 734, 1292, 1340
Hpy188I TCNGA 5 cut(s) 228, 872, 933, 999, 1499
Hpy188III TCNNGA 8 cut(s) 57, 242, 287, 311, 365, 485, 920, 1404
Hpy8I GTNNAC 5 cut(s) 67, 664, 734, 1292, 1340
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 3 cut(s) 92, 182, 284
HpyCH4III ACNGT 7 cut(s) 409, 461, 1101, 1161, 1247, 1334, 1509
HpyCH4V TGCA 6 cut(s) 554, 684, 703, 721, 944, 962
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 69, 950, 959, 1060, 1063
HpyF3I CTNAG 3 cut(s) 398, 1011, 1194
KpnI GGTACC 1 cut(s) 1273
Kzo9I GATC 9 cut(s) 53, 361, 385, 770, 783, 895, 922, 994, 1088
LguI GCTCTTC 1 cut(s) 995
LmnI GCTCC 4 cut(s) 638, 1156, 1369, 1409
Lsp1109I GCAGC 6 cut(s) 26, 448, 618, 1066, 1069, 1462
LweI GCATC 4 cut(s) 345, 693, 949, 1180
MaeI CTAG 3 cut(s) 536, 1398, 1404
MaeIII GTNAC 7 cut(s) 39, 271, 485, 569, 1095, 1220, 1328
MalI GATC 9 cut(s) 55, 363, 387, 772, 785, 897, 924, 996, 1090
MboI GATC 9 cut(s) 53, 361, 385, 770, 783, 895, 922, 994, 1088
MboII GAAGA 4 cut(s) 47, 738, 1012, 1085
MflI RGATCY 2 cut(s) 53, 895
MhlI GDGCHC 4 cut(s) 765, 1173, 1366, 1414
MlsI TGGCCA 1 cut(s) 125
MluNI TGGCCA 1 cut(s) 125
MlyI GAGTC 3 cut(s) 864, 875, 1437
MmeI TCCRAC 1 cut(s) 1303
Mox20I TGGCCA 1 cut(s) 125
MscI TGGCCA 1 cut(s) 125
MseI TTAA 3 cut(s) 219, 255, 468
MslI CAYNNNNRTG 2 cut(s) 246, 341
Msp20I TGGCCA 1 cut(s) 125
MspA1I CMGCKG 3 cut(s) 659, 1060, 1211
MspI CCGG 2 cut(s) 18, 211
MspR9I CCNGG 7 cut(s) 19, 212, 393, 1254, 1278, 1286, 1416
MvaI CCWGG 5 cut(s) 393, 1254, 1278, 1286, 1416
MvnI CGCG 1 cut(s) 1311
MwoI GCNNNNNNNGC 6 cut(s) 11, 69, 950, 959, 1060, 1063
NciI CCSGG 2 cut(s) 19, 212
NdeI CATATG 1 cut(s) 1372
NdeII GATC 9 cut(s) 53, 361, 385, 770, 783, 895, 922, 994, 1088
NheI GCTAGC 1 cut(s) 535
NlaIV GGNNCC 7 cut(s) 194, 620, 640, 1171, 1271, 1395, 1411
NmuCI GTSAC 3 cut(s) 485, 1095, 1220
PaeR7I CTCGAG 1 cut(s) 83
PagI TCATGA 1 cut(s) 241
PceI AGGCCT 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 995
PfeI GAWTC 2 cut(s) 307, 1019
PflFI GACNNNGTC 1 cut(s) 1218
PflMI CCANNNNNTGG 2 cut(s) 892, 1376
PfoI TCCNGGA 4 cut(s) 210, 391, 1252, 1276
PleI GAGTC 3 cut(s) 863, 875, 1436
PpsI GAGTC 3 cut(s) 863, 875, 1436
PpuMI RGGWCCY 2 cut(s) 284, 558
Psp124BI GAGCTC 2 cut(s) 765, 1366
Psp5II RGGWCCY 2 cut(s) 284, 558
Psp6I CCWGG 5 cut(s) 391, 1252, 1276, 1284, 1414
PspFI CCCAGC 1 cut(s) 1376
PspGI CCWGG 5 cut(s) 391, 1252, 1276, 1284, 1414
PspN4I GGNNCC 7 cut(s) 194, 620, 640, 1171, 1271, 1395, 1411
PspOMI GGGCCC 1 cut(s) 1169
PspPPI RGGWCCY 2 cut(s) 284, 558
PspXI VCTCGAGB 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 2 cut(s) 53, 895
PsyI GACNNNGTC 1 cut(s) 1218
PvuII CAGCTG 2 cut(s) 659, 1211
RsaI GTAC 3 cut(s) 477, 1166, 1271
RsaNI GTAC 3 cut(s) 476, 1165, 1270
RseI CAYNNNNRTG 2 cut(s) 246, 341
SacI GAGCTC 2 cut(s) 765, 1366
SalI GTCGAC 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 995
SaqAI TTAA 3 cut(s) 219, 255, 468
Sau3AI GATC 9 cut(s) 53, 361, 385, 770, 783, 895, 922, 994, 1088
ScaI AGTACT 1 cut(s) 477
SchI GAGTC 3 cut(s) 864, 875, 1437
ScrFI CCNGG 7 cut(s) 19, 212, 393, 1254, 1278, 1286, 1416
SduI GDGCHC 4 cut(s) 765, 1173, 1366, 1414
SfaNI GCATC 4 cut(s) 345, 693, 949, 1180
Sfr274I CTCGAG 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 2 cut(s) 246, 341
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 6 cut(s) 11, 1060, 1063, 1241, 1311, 1391
SspI AATATT 1 cut(s) 756
SspMI CTAG 3 cut(s) 536, 1398, 1404
SstI GAGCTC 2 cut(s) 765, 1366
StuI AGGCCT 1 cut(s) 378
StyD4I CCNGG 7 cut(s) 17, 210, 391, 1252, 1276, 1284, 1414
StyI CCWWGG 3 cut(s) 327, 812, 1354
TaaI ACNGT 7 cut(s) 409, 461, 1101, 1161, 1247, 1334, 1509
TaqI TCGA 3 cut(s) 58, 66, 84
TaqII GACCGA 1 cut(s) 1421
TatI WGTACW 1 cut(s) 475
TauI GCSGC 4 cut(s) 14, 1063, 1066, 1394
TfiI GAWTC 2 cut(s) 307, 1019
Tru1I TTAA 3 cut(s) 219, 255, 468
Tru9I TTAA 3 cut(s) 219, 255, 468
TscAI CASTG 3 cut(s) 960, 1166, 1339
TseFI GTSAC 3 cut(s) 485, 1095, 1220
TseI GCWGC 6 cut(s) 14, 436, 631, 1054, 1057, 1475
Tsp45I GTSAC 3 cut(s) 485, 1095, 1220
TspDTI ATGAA 9 cut(s) 36, 109, 195, 227, 258, 446, 470, 860, 1032
TspGWI ACGGA 1 cut(s) 1248
TspRI CASTG 3 cut(s) 960, 1166, 1339
Tth111I GACNNNGTC 1 cut(s) 1218
Van91I CCANNNNNTGG 2 cut(s) 892, 1376
XagI CCTNNNNNAGG 1 cut(s) 1254
XapI RAATTY 4 cut(s) 222, 864, 1031, 1467
XbaI TCTAGA 1 cut(s) 1403
XcmI CCANNNNNNNNNTGG 1 cut(s) 933
XhoI CTCGAG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 3 cut(s) 536, 1398, 1404
ZrmI AGTACT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.