Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002073.1

Orthogroup ID

OG0002129

Physical Location & Seq

Genomic Coordinates Reverse (-)

118146 .. 120240

Gene Structure 2095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002073.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgatacgtcaagcccaagcgctgtatcttagcttacatctttctttgctttatagttttgaccgccatgcgttggagttgttggagaggatgctcacgcttgatccttctcagagaatatctgctaaggacgctttagatgctgagtatttttggactgatccattaccgtgtgatcccaagagtctacctaaatatgaatcatcacacgagttccaaacaaagaaaaagcgtcagcaacaacggcaacatgaagaaaatgcaaaacgtcagaaactgcaacacccacagcaacatcgcattccgcccaatcagcaatctggacaagcacatgcccaaatacggcctggacctaaccagcccattcatggtacccagcccgtggttgctggagggcctagccaccattacgcaaagcctcgtgggccctctggaggggcaaacagatatccacctggtggaaatcctggtgggggatacagccaccttaatcggggtggtcaaggtggtggaggtggctacggcagtggcccatatcctgcacaaggacggggtggtgcaccatttggttctagtggtctgcctggtgctggtccccggggtggaggcagtggatatggagttggaggtccaaactatcctcaaaatggtccatatggtggttctggttctggtcgggggtcaaacatgatgggtggaaaccgcaatcaacagtatggttggcagccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

243

Amino Acids

25.92

Weight (kDa)

9.92

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10270 AT5G64960 AT5G64960
fragaria_vesca	FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_4g11370 FvH4_4g11370 FvH4_4g11370
malus_domestica	MD04G1037600.v1.1 MD15G1318300.v1.1
prunus_persica	Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.6G187600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0113361 RchiOBHm_Chr2g0113381 RchiOBHm_Chr4g0407881
rosa_laevigata	RLG00000008692 RLG00000018058
rosa_multiflora	Rmu_sc0002073.1_g000029 Rmu_sc0007621.1_g000001 Rmu_sc0011967.1_g000006 Rmu_sc0029075.1_g000002 Rmu_sc0029867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129320 Rroxscaffold_2G00129850 Rroxscaffold_5G00352420
rosa_rugosa	Rorug02G0186500 Rorug04G0081800 Rorug04G0081900
rosa_samantha	Rh2AG241100 Rh2BG255300 Rh2CG245400 Rh2DG249100 Rh4AG147000 Rh4BG144500 Rh4CG153800 Rh4DG141000
rosa_wichuraiana	Rw2G018830 Rw4G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	4 cut(s)	73, 382, 458, 659
AccI	GTMKAC	1 cut(s)	187
AciI	CCGC	3 cut(s)	64, 305, 703
AclWI	GGATC	3 cut(s)	98, 155, 170
AdeI	CACNNNGTG	1 cut(s)	458
AfaI	GTAC	1 cut(s)	373
AfeI	AGCGCT	1 cut(s)	21
AjnI	CCWGG	4 cut(s)	346, 454, 466, 583
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw21I	GWGCWC	1 cut(s)	562
Alw44I	GTGCAC	1 cut(s)	558
AlwI	GGATC	3 cut(s)	98, 155, 170
AlwNI	CAGNNNCTG	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	597
Aor51HI	AGCGCT	1 cut(s)	21
AoxI	GGCC	4 cut(s)	344, 395, 425, 529
ApaI	GGGCCC	1 cut(s)	429
ApaLI	GTGCAC	1 cut(s)	558
ApeKI	GCWGC	1 cut(s)	724
Asp718I	GGTACC	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	8 cut(s)	350, 395, 425, 426, 530, 593, 629, 650
AsuC2I	CCSGG	2 cut(s)	598, 599
AvaI	CYCGRG	1 cut(s)	597
AvaII	GGWCC	4 cut(s)	350, 593, 629, 650
BaeGI	GKGCMC	2 cut(s)	429, 562
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	429
BauI	CACGAG	2 cut(s)	209, 420
Bbv12I	GWGCWC	1 cut(s)	562
BccI	CCATC	1 cut(s)	685
BceAI	ACGGC	4 cut(s)	260, 359, 538, 712
BciT130I	CCWGG	4 cut(s)	348, 456, 468, 585
BciVI	GTATCC	1 cut(s)	470
BcnI	CCSGG	2 cut(s)	598, 599
BfaI	CTAG	2 cut(s)	399, 573
BfoI	RGCGCY	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	470
BglI	GCCNNNNNGGC	1 cut(s)	424
BisI	GCNGC	1 cut(s)	725
BlsI	GCNGC	1 cut(s)	726
Bme1390I	CCNGG	6 cut(s)	348, 456, 468, 585, 598, 599
Bme18I	GGWCC	4 cut(s)	350, 593, 629, 650
BmeT110I	CYCGRG	1 cut(s)	597
BmgT120I	GGNCC	8 cut(s)	350, 395, 425, 426, 530, 593, 629, 650
BmiI	GGNNCC	3 cut(s)	373, 427, 595
BmrFI	CCNGG	6 cut(s)	348, 456, 468, 585, 598, 599
BmsI	GCATC	2 cut(s)	81, 130
BpmI	CTGGAG	2 cut(s)	411, 453
Bpu10I	CCTNAGC	1 cut(s)	126
BpuMI	CCSGG	2 cut(s)	598, 599
BsaJI	CCNNGG	4 cut(s)	381, 596, 597, 598
BseBI	CCWGG	4 cut(s)	348, 456, 468, 585
BseDI	CCNNGG	4 cut(s)	381, 596, 597, 598
BseGI	GGATG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	125, 135
BseSI	GKGCMC	2 cut(s)	429, 562
BseYI	CCCAGC	1 cut(s)	375
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	4 cut(s)	346, 397, 427, 531
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	597
BsiSI	CCGG	1 cut(s)	598
BslFI	GGGAC	1 cut(s)	579
BsmFI	GGGAC	1 cut(s)	579
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	4 cut(s)	346, 397, 427, 531
BsoBI	CYCGRG	1 cut(s)	597
Bsp120I	GGGCCC	1 cut(s)	425
Bsp1286I	GDGCHC	2 cut(s)	429, 562
Bsp143I	GATC	3 cut(s)	103, 160, 175
BspACI	CCGC	3 cut(s)	64, 305, 703
BspANI	GGCC	4 cut(s)	346, 397, 427, 531
BspCNI	CTCAG	2 cut(s)	124, 136
BspLI	GGNNCC	3 cut(s)	373, 427, 595
BspPI	GGATC	3 cut(s)	98, 155, 170
BspT107I	GGYRCC	1 cut(s)	371
BssECI	CCNNGG	4 cut(s)	381, 596, 597, 598
BssMI	GATC	3 cut(s)	103, 160, 175
BssSI	CACGAG	2 cut(s)	209, 420
Bst2BI	CACGAG	2 cut(s)	209, 420
Bst2UI	CCWGG	4 cut(s)	348, 456, 468, 585
Bst4CI	ACNGT	2 cut(s)	171, 714
BstDEI	CTNAG	4 cut(s)	29, 111, 126, 144
BstDSI	CCRYGG	1 cut(s)	381
BstENI	CCTNNNNNAGG	1 cut(s)	543
BstF5I	GGATG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	3 cut(s)	106, 163, 178
BstMBI	GATC	3 cut(s)	103, 160, 175
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 140, 244, 313, 424
BstNI	CCWGG	4 cut(s)	348, 456, 468, 585
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	6 cut(s)	346, 454, 466, 583, 596, 597
BstSLI	GKGCMC	2 cut(s)	429, 562
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	4 cut(s)	346, 397, 427, 531
BtgI	CCRYGG	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	2 cut(s)	532, 616
BtsIMutI	CAGTG	2 cut(s)	532, 616
CaiI	CAGNNNCTG	1 cut(s)	277
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	8 cut(s)	350, 395, 425, 426, 530, 593, 629, 650
Cfr9I	CCCGGG	1 cut(s)	597
CseI	GACGC	2 cut(s)	140, 221
CsiI	ACCWGGT	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	5 cut(s)	68, 251, 332, 368, 688
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	4 cut(s)	29, 111, 126, 144
DpnI	GATC	3 cut(s)	105, 162, 177
DpnII	GATC	3 cut(s)	103, 160, 175
DraIII	CACNNNGTG	1 cut(s)	458
EciI	GGCGGA	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	449
Eco47I	GGWCC	4 cut(s)	350, 593, 629, 650
Eco47III	AGCGCT	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	597
EcoNI	CCTNNNNNAGG	1 cut(s)	543
EcoO109I	RGGNCCY	2 cut(s)	395, 426
EcoRII	CCWGG	4 cut(s)	346, 454, 466, 583
EcoRV	GATATC	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	429
FaeI	CATG	5 cut(s)	71, 254, 335, 371, 691
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	5 cut(s)	67, 250, 331, 367, 687
FauNDI	CATATG	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	725
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	725
FspBI	CTAG	2 cut(s)	399, 573
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	725
GsaI	CCCAGC	1 cut(s)	379
GsuI	CTGGAG	2 cut(s)	411, 453
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	4 cut(s)	346, 397, 427, 531
HapII	CCGG	1 cut(s)	598
HgaI	GACGC	2 cut(s)	140, 221
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	5 cut(s)	71, 254, 335, 371, 691
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	2 cut(s)	184, 200
HpaII	CCGG	1 cut(s)	598
Hpy166II	GTNNAC	2 cut(s)	188, 560
Hpy188I	TCNGA	2 cut(s)	114, 273
Hpy188III	TCNNGA	2 cut(s)	321, 432
Hpy8I	GTNNAC	2 cut(s)	188, 560
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	2 cut(s)	171, 714
HpyCH4IV	ACGT	2 cut(s)	7, 268
HpyCH4V	TGCA	4 cut(s)	263, 280, 542, 560
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 140, 244, 313, 424
HpyF3I	CTNAG	4 cut(s)	29, 111, 126, 144
HpySE526I	ACGT	2 cut(s)	7, 268
Hsp92II	CATG	5 cut(s)	71, 254, 335, 371, 691
HspAI	GCGC	1 cut(s)	20
KpnI	GGTACC	1 cut(s)	375
Kzo9I	GATC	3 cut(s)	103, 160, 175
LweI	GCATC	2 cut(s)	81, 130
MabI	ACCWGGT	1 cut(s)	454
MaeI	CTAG	2 cut(s)	399, 573
MaeII	ACGT	2 cut(s)	7, 268
MalI	GATC	3 cut(s)	105, 162, 177
MboI	GATC	3 cut(s)	103, 160, 175
MboII	GAAGA	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	429, 562
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	3 cut(s)	54, 63, 604
MnlI	CCTC	9 cut(s)	81, 386, 428, 429, 439, 506, 599, 620, 651
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	169
MspI	CCGG	1 cut(s)	598
MspR9I	CCNGG	6 cut(s)	348, 456, 468, 585, 598, 599
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	4 cut(s)	348, 456, 468, 585
MwoI	GCNNNNNNNGC	5 cut(s)	131, 140, 244, 313, 424
NciI	CCSGG	2 cut(s)	598, 599
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	3 cut(s)	103, 160, 175
NlaIII	CATG	5 cut(s)	71, 254, 335, 371, 691
NlaIV	GGNNCC	3 cut(s)	373, 427, 595
NspI	RCATGY	1 cut(s)	335
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	200
PflMI	CCANNNNNTGG	4 cut(s)	73, 382, 458, 659
PkrI	GCNGC	1 cut(s)	726
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp6I	CCWGG	4 cut(s)	346, 454, 466, 583
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	4 cut(s)	346, 454, 466, 583
PspN4I	GGNNCC	3 cut(s)	373, 427, 595
PspOMI	GGGCCC	1 cut(s)	425
PspPI	GGNCC	8 cut(s)	350, 395, 425, 426, 530, 593, 629, 650
PstNI	CAGNNNCTG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	1 cut(s)	725
Sau3AI	GATC	3 cut(s)	103, 160, 175
Sau96I	GGNCC	8 cut(s)	350, 395, 425, 426, 530, 593, 629, 650
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	6 cut(s)	348, 456, 468, 585, 598, 599
SduI	GDGCHC	2 cut(s)	429, 562
SexAI	ACCWGGT	1 cut(s)	454
SfaNI	GCATC	2 cut(s)	81, 130
SinI	GGWCC	4 cut(s)	350, 593, 629, 650
SmaI	CCCGGG	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	169
SsiI	CCGC	3 cut(s)	64, 305, 703
SspMI	CTAG	2 cut(s)	399, 573
StyD4I	CCNGG	6 cut(s)	346, 454, 466, 583, 596, 597
TaaI	ACNGT	2 cut(s)	171, 714
TaiI	ACGT	2 cut(s)	10, 271
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	2 cut(s)	532, 616
TseI	GCWGC	1 cut(s)	724
TspDTI	ATGAA	3 cut(s)	213, 267, 356
TspMI	CCCGGG	1 cut(s)	597
TspRI	CASTG	2 cut(s)	532, 616
Van91I	CCANNNNNTGG	4 cut(s)	73, 382, 458, 659
VneI	GTGCAC	1 cut(s)	558
VpaK11BI	GGWCC	4 cut(s)	350, 593, 629, 650
XagI	CCTNNNNNAGG	1 cut(s)	543
XceI	RCATGY	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	2 cut(s)	344, 365
XmaI	CCCGGG	1 cut(s)	597
XmiI	GTMKAC	1 cut(s)	187
XspI	CTAG	2 cut(s)	399, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.