Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002129

Physical Location & Seq

Genomic Coordinates Forward (+)

17375684 .. 17376429

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0186500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGGCGCATAGCATCTGGGAGATTAGTCCCACGGAACTGTTCTTGTCCTCCAGCAATGGAAACAAGAGCTGACCTCAAGGGAGTCAAATCCCAAGTCCAGAATCTGGTTGAAGAGTTGCATGGCACTTGTGTTGATACTCAAAGAGAAGCAACACTTCAGCTCCGACTACTCGCAAAGCATAACATGAACAATCGGATTGTTATTGCAAACTGTGGAGCCATAAGCTTTTTGGTGGATTTGCTAAGCTCAACTGACAAAAGGGCAATTGAGTCTCTGGTTCATGTGCTTGAGAATGGGAGTGATGAGACCAAGGAGAACTCAGCTGCCACGTTGTTTAGCCTTTCGATGATCTGGGAAAACAAGGTTCGGATTGGAAGGGAACGGATTGTTCAAGCTGGTGCTGTGAAGTACTTGGTGGAGTTTGTGATGAATCCAGAAGCTGGAATAGTTGACCATTTGGCTGCTTTTTGTACAAGTCATGAAGGGAGGATAGAAATTGTTGAGGAAGGTGGGGTTCCTGTTCTGGTTGAGGTTTTGAAGTTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

183

Amino Acids

20.12

Weight (kDa)

6.22

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10270 AT5G64960 AT5G64960
fragaria_vesca	FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_4g11370 FvH4_4g11370 FvH4_4g11370
malus_domestica	MD04G1037600.v1.1 MD15G1318300.v1.1
prunus_persica	Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.6G187600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0113361 RchiOBHm_Chr2g0113381 RchiOBHm_Chr4g0407881
rosa_laevigata	RLG00000008692 RLG00000018058
rosa_multiflora	Rmu_sc0002073.1_g000029 Rmu_sc0007621.1_g000001 Rmu_sc0011967.1_g000006 Rmu_sc0029075.1_g000002 Rmu_sc0029867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129320 Rroxscaffold_2G00129850 Rroxscaffold_5G00352420
rosa_rugosa	Rorug02G0186500 Rorug04G0081800 Rorug04G0081900
rosa_samantha	Rh2AG241100 Rh2BG255300 Rh2CG245400 Rh2DG249100 Rh4AG147000 Rh4BG144500 Rh4CG153800 Rh4DG141000
rosa_wichuraiana	Rw2G018830 Rw4G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	106, 443
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	2 cut(s)	413, 475
AfiI	CCNNNNNNNGG	2 cut(s)	106, 443
AgsI	TTSAA	3 cut(s)	113, 395, 541
AluBI	AGCT	7 cut(s)	71, 163, 228, 249, 326, 398, 443
AluI	AGCT	7 cut(s)	71, 163, 228, 249, 326, 398, 443
Alw26I	GTCTC	2 cut(s)	279, 302
AlwNI	CAGNNNCTG	2 cut(s)	106, 443
ApeKI	GCWGC	2 cut(s)	326, 464
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AspLEI	GCGC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	313, 451
BcoDI	GTCTC	2 cut(s)	279, 302
BisI	GCNGC	2 cut(s)	327, 465
BlpI	GCTNAGC	1 cut(s)	245
BlsI	GCNGC	2 cut(s)	328, 466
BmcAI	AGTACT	1 cut(s)	413
BmiI	GGNNCC	2 cut(s)	220, 519
BmsI	GCATC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpmI	CTGGAG	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	62, 311
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	32, 312
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 443
Bse3DI	GCAATG	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	32, 312
BseLI	CCNNNNNNNGG	2 cut(s)	106, 443
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	313, 451
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	106, 443
BsmAI	GTCTC	2 cut(s)	279, 302
BsmFI	GGGAC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	302
Bsp1407I	TGTACA	1 cut(s)	473
Bsp143I	GATC	1 cut(s)	351
Bsp1720I	GCTNAGC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	335
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	220, 519
BspTNI	GGTCTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	473
BssECI	CCNNGG	2 cut(s)	32, 312
BssMI	GATC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	41, 215
Bst6I	CTCTTC	1 cut(s)	108
BstAUI	TGTACA	1 cut(s)	473
BstDEI	CTNAG	2 cut(s)	245, 322
BstDSI	CCRYGG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	354
BstMAI	GTCTC	2 cut(s)	279, 302
BstMBI	GATC	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	313, 451
BtgI	CCRYGG	1 cut(s)	32
CaiI	CAGNNNCTG	2 cut(s)	106, 443
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	412, 474
CviAII	CATG	4 cut(s)	122, 187, 284, 482
CviQI	GTAC	2 cut(s)	412, 474
DdeI	CTNAG	2 cut(s)	245, 322
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	4 cut(s)	125, 190, 287, 485
FaiI	YATR	7 cut(s)	11, 123, 183, 188, 224, 285, 483
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	4 cut(s)	121, 186, 283, 481
Fnu4HI	GCNGC	2 cut(s)	327, 465
Fsp4HI	GCNGC	2 cut(s)	327, 465
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	327, 465
GsuI	CTGGAG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	4 cut(s)	125, 190, 287, 485
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	4 cut(s)	84, 103, 272, 433
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	3 cut(s)	167, 198, 372
Hpy188III	TCNNGA	3 cut(s)	100, 437, 482
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	3 cut(s)	372, 479, 503
HpyCH4III	ACNGT	2 cut(s)	41, 215
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	2 cut(s)	121, 209
HpyF3I	CTNAG	2 cut(s)	245, 322
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	4 cut(s)	125, 190, 287, 485
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	2 cut(s)	168, 218
Lsp1109I	GCAGC	2 cut(s)	313, 451
LweI	GCATC	1 cut(s)	23
MaeII	ACGT	1 cut(s)	332
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	1 cut(s)	125
MfeI	CAATTG	1 cut(s)	267
MluCI	AATT	2 cut(s)	267, 498
MlyI	GAGTC	2 cut(s)	93, 281
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	5 cut(s)	60, 86, 483, 499, 526
MseI	TTAA	1 cut(s)	550
MspA1I	CMGCKG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	267
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	4 cut(s)	125, 190, 287, 485
NlaIV	GGNNCC	2 cut(s)	220, 519
PagI	TCATGA	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	103, 433
PflMI	CCANNNNNTGG	2 cut(s)	106, 443
PkrI	GCNGC	2 cut(s)	328, 466
PleI	GAGTC	2 cut(s)	92, 280
PpsI	GAGTC	2 cut(s)	92, 280
PspN4I	GGNNCC	2 cut(s)	220, 519
PstNI	CAGNNNCTG	2 cut(s)	106, 443
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	413, 475
RsaNI	GTAC	2 cut(s)	412, 474
SaqAI	TTAA	1 cut(s)	550
SatI	GCNGC	2 cut(s)	327, 465
Sau3AI	GATC	1 cut(s)	351
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	2 cut(s)	93, 281
SfaNI	GCATC	1 cut(s)	23
SmlI	CTYRAG	2 cut(s)	77, 290
SmoI	CTYRAG	2 cut(s)	77, 290
Sse9I	AATT	2 cut(s)	267, 498
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	41, 215
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	1 cut(s)	347
TasI	AATT	2 cut(s)	267, 498
TatI	WGTACW	2 cut(s)	411, 473
TfiI	GAWTC	2 cut(s)	103, 433
Tru1I	TTAA	1 cut(s)	550
Tru9I	TTAA	1 cut(s)	550
TseI	GCWGC	2 cut(s)	326, 464
TspDTI	ATGAA	4 cut(s)	203, 272, 446, 498
TspGWI	ACGGA	2 cut(s)	49, 400
Van91I	CCANNNNNTGG	2 cut(s)	106, 443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.