Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002129

Physical Location & Seq

Genomic Coordinates Reverse (-)

12524394 .. 12527146

Gene Structure 2753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0081800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCAAGATCAATTTATTCTATTATATGACGACGAGAACCCCGAGGATGGTGGCGGTGGAGGTGAAGGTGAAGGTGAAGGTGGAGGAAATGAGGAGGATGATTATGTTGAAGGCGGGGATGATGACAATGACTCTGTCAATGAGGAACTTGACAACTTGGAAGATAATCAGGATGGAGGAGATGATATCCATGACATGGATGACGACAATGAGGAACATGACAACTTGGAAGATAATGAGTATGGAGGAGATGGCCGTATCACTAGAGTTGAGGAAGAAGATCGTGACCTTAATGTATATTTGAGGACAAGTGCTTTTTATGTTTACAAGCTTCACCCAAAGAAGAAGAAGATTGTTAGTGCACGGTGCCTGGAGGATCAAGTGCATCCTGCAATTAACCAGCCAACTGCACCACCAGTTGAGGAAGATTTAGAGCTGGTCAAGGCTATTGATGCCTCCATTCAGTCTTCTTTGCAGGAGAGGCCGCCCTTGTCTGATGCACTCCGGATCCATGAAAACAAATGCTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

177

Amino Acids

19.84

Weight (kDa)

4.05

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10270 AT5G64960 AT5G64960
fragaria_vesca	FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_4g11370 FvH4_4g11370 FvH4_4g11370
malus_domestica	MD04G1037600.v1.1 MD15G1318300.v1.1
prunus_persica	Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.6G187600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0113361 RchiOBHm_Chr2g0113381 RchiOBHm_Chr4g0407881
rosa_laevigata	RLG00000008692 RLG00000018058
rosa_multiflora	Rmu_sc0002073.1_g000029 Rmu_sc0007621.1_g000001 Rmu_sc0011967.1_g000006 Rmu_sc0029075.1_g000002 Rmu_sc0029867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129320 Rroxscaffold_2G00129850 Rroxscaffold_5G00352420
rosa_rugosa	Rorug02G0186500 Rorug04G0081800 Rorug04G0081900
rosa_samantha	Rh2AG241100 Rh2BG255300 Rh2CG245400 Rh2DG249100 Rh4AG147000 Rh4BG144500 Rh4CG153800 Rh4DG141000
rosa_wichuraiana	Rw2G018830 Rw4G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	366
AccB7I	CCANNNNNTGG	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	504
AciI	CCGC	3 cut(s)	54, 114, 485
AclWI	GGATC	3 cut(s)	384, 502, 515
AcoI	YGGCCR	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	47, 196
AgsI	TTSAA	2 cut(s)	110, 529
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	2 cut(s)	331, 436
AluI	AGCT	2 cut(s)	331, 436
Alw21I	GWGCWC	1 cut(s)	364
Alw44I	GTGCAC	1 cut(s)	360
AlwI	GGATC	3 cut(s)	384, 502, 515
Ama87I	CYCGRG	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	504
AoxI	GGCC	2 cut(s)	253, 482
ApaLI	GTGCAC	1 cut(s)	360
AsuHPI	GGTGA	4 cut(s)	74, 80, 86, 326
AvaI	CYCGRG	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	364
BamHI	GGATCC	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	364
BccI	CCATC	3 cut(s)	41, 167, 245
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	371
BfaI	CTAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	485
BlsI	GCNGC	1 cut(s)	486
Bme1390I	CCNGG	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	368, 509
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	3 cut(s)	394, 442, 487
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 196
Bse1I	ACTGG	1 cut(s)	416
BseAI	TCCGGA	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	6 cut(s)	52, 103, 124, 178, 205, 385
BseLI	CCNNNNNNNGG	2 cut(s)	47, 196
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	3 cut(s)	107, 192, 261
BseSI	GKGCMC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	2 cut(s)	255, 484
BshNI	GGYRCC	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	364
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	505
BslI	CCNNNNNNNGG	2 cut(s)	47, 196
BsnI	GGCC	2 cut(s)	255, 484
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp13I	TCCGGA	1 cut(s)	504
Bsp143I	GATC	4 cut(s)	7, 280, 376, 507
BspACI	CCGC	3 cut(s)	54, 114, 485
BspANI	GGCC	2 cut(s)	255, 484
BspEI	TCCGGA	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	368, 509
BspPI	GGATC	3 cut(s)	384, 502, 515
BspT107I	GGYRCC	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	4 cut(s)	7, 280, 376, 507
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	366
BstF5I	GGATG	6 cut(s)	52, 103, 124, 178, 205, 385
BstKTI	GATC	4 cut(s)	10, 283, 379, 510
BstMBI	GATC	4 cut(s)	7, 280, 376, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 481
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	255, 484
BtsCI	GGATG	6 cut(s)	52, 103, 124, 178, 205, 385
CviAII	CATG	4 cut(s)	191, 196, 218, 512
CviJI	RGCY	6 cut(s)	255, 331, 403, 436, 446, 484
CviKI_1	RGCY	6 cut(s)	255, 331, 403, 436, 446, 484
DpnI	GATC	4 cut(s)	9, 282, 378, 509
DpnII	GATC	4 cut(s)	7, 280, 376, 507
EaeI	YGGCCR	1 cut(s)	253
Eco32I	GATATC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	369
EcoRV	GATATC	1 cut(s)	187
FaeI	CATG	4 cut(s)	194, 199, 221, 515
FatI	CATG	4 cut(s)	190, 195, 217, 511
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	485
FokI	GGATG	6 cut(s)	59, 110, 131, 185, 212, 372
Fsp4HI	GCNGC	1 cut(s)	485
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	1 cut(s)	485
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	255, 484
HapII	CCGG	1 cut(s)	505
Hin1II	CATG	4 cut(s)	194, 199, 221, 515
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	4 cut(s)	74, 80, 86, 326
Hpy166II	GTNNAC	2 cut(s)	325, 362
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	3 cut(s)	170, 284, 505
Hpy8I	GTNNAC	2 cut(s)	325, 362
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	4 cut(s)	59, 65, 71, 104
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4V	TGCA	7 cut(s)	4, 362, 385, 392, 410, 475, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 481
Hsp92II	CATG	4 cut(s)	194, 199, 221, 515
Kpn2I	TCCGGA	1 cut(s)	504
Kzo9I	GATC	4 cut(s)	7, 280, 376, 507
LpnPI	CCDG	9 cut(s)	155, 356, 383, 402, 413, 422, 429, 461, 518
LweI	GCATC	3 cut(s)	394, 442, 487
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	4 cut(s)	9, 282, 378, 509
MboI	GATC	4 cut(s)	7, 280, 376, 507
MboII	GAAGA	9 cut(s)	173, 242, 287, 290, 355, 358, 361, 437, 459
MflI	RGATCY	1 cut(s)	507
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	2 cut(s)	11, 393
MlyI	GAGTC	1 cut(s)	125
MroI	TCCGGA	1 cut(s)	504
MseI	TTAA	2 cut(s)	291, 396
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	452, 481
NdeII	GATC	4 cut(s)	7, 280, 376, 507
NlaIII	CATG	4 cut(s)	194, 199, 221, 515
NlaIV	GGNNCC	2 cut(s)	368, 509
NmuCI	GTSAC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	486
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	368, 509
PsuI	RGATCY	1 cut(s)	507
PsyI	GACNNNGTC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	291, 396
SatI	GCNGC	1 cut(s)	485
Sau3AI	GATC	4 cut(s)	7, 280, 376, 507
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	7 cut(s)	64, 70, 76, 82, 291, 333, 438
SfaNI	GCATC	3 cut(s)	394, 442, 487
Sse9I	AATT	2 cut(s)	11, 393
SsiI	CCGC	3 cut(s)	54, 114, 485
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	366
TasI	AATT	2 cut(s)	11, 393
TauI	GCSGC	1 cut(s)	487
Tru1I	TTAA	2 cut(s)	291, 396
Tru9I	TTAA	2 cut(s)	291, 396
TseFI	GTSAC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	528
Tth111I	GACNNNGTC	1 cut(s)	134
Van91I	CCANNNNNTGG	1 cut(s)	196
VneI	GTGCAC	1 cut(s)	360
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.