Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007621.1

Orthogroup ID

OG0002129

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2598

Gene Structure 2598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007621.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ctgcttgcatttgagaaccaccacaccactgggattgagacttggttcagagacatcaattgggcaacaagtgaggtagaagaaaggggggaaatggcaatagcagcccctgggcagctcaacctcaacgaagtcccttcatggggatccagaggcgtcgactgcttcgagaaattggaacagattggcgagggtacctatggacaagtttacatggctaaagaaataaagacaggtgaaattgtagctttgaagaaaatacggatggacaatgagagagaggggttccccataactgccatacgggaaatcaaaattctaaagaagctgcaccatgacaatgtgatcaagttgaaagagatcgtgacatctccagggccagagaaggatgagcaaggcaggccagatggtaacaagtataaggggggaatctatatggtctttgaatacatggaccatgatctgacaggtctagctgatcgacctgggatgagattttcagtcccccagattaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

172

Amino Acids

19.55

Weight (kDa)

5.6

Isoelectric Point (pI)

27.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10270 AT5G64960 AT5G64960
fragaria_vesca	FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_4g11370 FvH4_4g11370 FvH4_4g11370
malus_domestica	MD04G1037600.v1.1 MD15G1318300.v1.1
prunus_persica	Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.6G187600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0113361 RchiOBHm_Chr2g0113381 RchiOBHm_Chr4g0407881
rosa_laevigata	RLG00000008692 RLG00000018058
rosa_multiflora	Rmu_sc0002073.1_g000029 Rmu_sc0007621.1_g000001 Rmu_sc0011967.1_g000006 Rmu_sc0029075.1_g000002 Rmu_sc0029867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129320 Rroxscaffold_2G00129850 Rroxscaffold_5G00352420
rosa_rugosa	Rorug02G0186500 Rorug04G0081800 Rorug04G0081900
rosa_samantha	Rh2AG241100 Rh2BG255300 Rh2CG245400 Rh2DG249100 Rh4AG147000 Rh4BG144500 Rh4CG153800 Rh4DG141000
rosa_wichuraiana	Rw2G018830 Rw4G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	159
AclWI	GGATC	2 cut(s)	141, 154
AcsI	RAATTY	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	2 cut(s)	142, 143
AgsI	TTSAA	3 cut(s)	253, 355, 446
AjnI	CCWGG	3 cut(s)	109, 373, 484
AluBI	AGCT	4 cut(s)	118, 248, 328, 476
AluI	AGCT	4 cut(s)	118, 248, 328, 476
Alw26I	GTCTC	2 cut(s)	32, 45
AlwI	GGATC	2 cut(s)	141, 154
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	377, 401
ApeKI	GCWGC	3 cut(s)	104, 115, 328
ApoI	RAATTY	1 cut(s)	315
Asp718I	GGTACC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	377, 454
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	454
BamHI	GGATCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	116, 127, 315
BccI	CCATC	2 cut(s)	259, 401
BciT130I	CCWGG	3 cut(s)	111, 375, 486
BclI	TGATCA	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	32, 45
BfaI	CTAG	1 cut(s)	473
BisI	GCNGC	3 cut(s)	105, 116, 329
BlsI	GCNGC	3 cut(s)	106, 117, 330
Bme1390I	CCNGG	3 cut(s)	111, 375, 486
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	2 cut(s)	377, 454
BmiI	GGNNCC	3 cut(s)	148, 196, 287
BmrFI	CCNGG	3 cut(s)	111, 375, 486
BmrI	ACTGGG	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	4 cut(s)	109, 110, 374, 485
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 143
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	3 cut(s)	111, 375, 486
BseDI	CCNNGG	4 cut(s)	109, 110, 374, 485
BseGI	GGATG	3 cut(s)	270, 394, 495
BseLI	CCNNNNNNNGG	2 cut(s)	142, 143
BseNI	ACTGG	1 cut(s)	34
BseXI	GCAGC	3 cut(s)	116, 127, 315
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	2 cut(s)	379, 403
BshNI	GGYRCC	1 cut(s)	194
BslFI	GGGAC	2 cut(s)	119, 488
BslI	CCNNNNNNNGG	2 cut(s)	142, 143
BsmAI	GTCTC	2 cut(s)	32, 45
BsmFI	GGGAC	2 cut(s)	119, 488
BsnI	GGCC	2 cut(s)	379, 403
Bsp143I	GATC	5 cut(s)	146, 345, 360, 460, 478
BspANI	GGCC	2 cut(s)	379, 403
BspLI	GGNNCC	3 cut(s)	148, 196, 287
BspPI	GGATC	2 cut(s)	141, 154
BspT107I	GGYRCC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	4 cut(s)	109, 110, 374, 485
BssMI	GATC	5 cut(s)	146, 345, 360, 460, 478
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	3 cut(s)	111, 375, 486
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	6, 401
BstF5I	GGATG	3 cut(s)	270, 394, 495
BstKTI	GATC	5 cut(s)	149, 348, 363, 463, 481
BstMAI	GTCTC	2 cut(s)	32, 45
BstMBI	GATC	5 cut(s)	146, 345, 360, 460, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 162, 400
BstNI	CCWGG	3 cut(s)	111, 375, 486
BstSCI	CCNGG	3 cut(s)	109, 373, 484
BstV1I	GCAGC	3 cut(s)	116, 127, 315
BstX2I	RGATCY	1 cut(s)	146
BstXI	CCANNNNNNTGG	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	379, 403
BtsCI	GGATG	3 cut(s)	270, 394, 495
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	6, 401
CaiI	CAGNNNCTG	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	377, 454
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	195
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviAII	CATG	5 cut(s)	141, 214, 335, 451, 458
CviJI	RGCY	8 cut(s)	107, 118, 218, 248, 328, 379, 403, 476
CviKI_1	RGCY	8 cut(s)	107, 118, 218, 248, 328, 379, 403, 476
CviQI	GTAC	1 cut(s)	195
DpnI	GATC	5 cut(s)	148, 347, 362, 462, 480
DpnII	GATC	5 cut(s)	146, 345, 360, 460, 478
Eco47I	GGWCC	1 cut(s)	454
EcoRII	CCWGG	3 cut(s)	109, 373, 484
FaeI	CATG	5 cut(s)	144, 217, 338, 454, 461
FaqI	GGGAC	2 cut(s)	119, 488
FatI	CATG	5 cut(s)	140, 213, 334, 450, 457
FbaI	TGATCA	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	105, 116, 329
FokI	GGATG	3 cut(s)	277, 401, 502
Fsp4HI	GCNGC	3 cut(s)	105, 116, 329
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	3 cut(s)	105, 116, 329
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	379, 403
HgaI	GACGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	5 cut(s)	144, 217, 338, 454, 461
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	429
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	2 cut(s)	160, 211
Hpy188I	TCNGA	2 cut(s)	50, 465
Hpy188III	TCNNGA	3 cut(s)	150, 169, 364
Hpy8I	GTNNAC	2 cut(s)	160, 211
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	147, 379
HpyCH4V	TGCA	2 cut(s)	8, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 162, 400
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	5 cut(s)	144, 217, 338, 454, 461
KpnI	GGTACC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	5 cut(s)	146, 345, 360, 460, 478
Lsp1109I	GCAGC	3 cut(s)	116, 127, 315
MaeI	CTAG	1 cut(s)	473
MaeIII	GTNAC	2 cut(s)	364, 410
MalI	GATC	5 cut(s)	148, 347, 362, 462, 480
MboI	GATC	5 cut(s)	146, 345, 360, 460, 478
MboII	GAAGA	2 cut(s)	92, 265
MfeI	CAATTG	1 cut(s)	58
MflI	RGATCY	1 cut(s)	146
MluCI	AATT	4 cut(s)	58, 173, 240, 315
MnlI	CCTC	5 cut(s)	67, 134, 146, 184, 274
MseI	TTAA	1 cut(s)	513
MslI	CAYNNNNRTG	1 cut(s)	339
MspR9I	CCNGG	3 cut(s)	111, 375, 486
MunI	CAATTG	1 cut(s)	58
MvaI	CCWGG	3 cut(s)	111, 375, 486
MwoI	GCNNNNNNNGC	3 cut(s)	104, 162, 400
NdeII	GATC	5 cut(s)	146, 345, 360, 460, 478
NlaIII	CATG	5 cut(s)	144, 217, 338, 454, 461
NlaIV	GGNNCC	3 cut(s)	148, 196, 287
NmuCI	GTSAC	1 cut(s)	364
PasI	CCCWGGG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	429
PkrI	GCNGC	3 cut(s)	106, 117, 330
Psp6I	CCWGG	3 cut(s)	109, 373, 484
PspGI	CCWGG	3 cut(s)	109, 373, 484
PspN4I	GGNNCC	3 cut(s)	148, 196, 287
PspPI	GGNCC	2 cut(s)	377, 454
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	339
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	3 cut(s)	105, 116, 329
Sau3AI	GATC	5 cut(s)	146, 345, 360, 460, 478
Sau96I	GGNCC	2 cut(s)	377, 454
ScrFI	CCNGG	3 cut(s)	111, 375, 486
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	4 cut(s)	58, 173, 240, 315
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	109, 373, 484
TaqI	TCGA	3 cut(s)	159, 168, 481
TasI	AATT	4 cut(s)	58, 173, 240, 315
TfiI	GAWTC	1 cut(s)	429
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	3 cut(s)	104, 115, 328
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	1 cut(s)	129
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	1 cut(s)	315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.