Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029075.1

Orthogroup ID

OG0002129

Physical Location & Seq

Genomic Coordinates Reverse (-)

1197 .. 3948

Gene Structure 2752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029075.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ctgtgtggagctccagatgaggtcaactggcctggagttacaaagattccttggtataacaacttcaagccaacaaggcctatgaagagacgcctcagggaggttttcagacattttgaccgccatgcgttggagttgttggagaggatgctcacgcttgatccttctcagagaatatctgctaaggacgctttagatgctgagtatttttggactgatccattaccgtgtgatcccaagagtctacctaaatatgaatcatcacacgagttccaaacaaagaaaaagcgtcagcaacaacggcaacatgaagaaaatgcaaaacgtcagaaactgcaacacccacagcaacatcgcattccgcccaatcagcaatctggacaagcacatgcccaaatacggcctggacctaaccagcccattcatggtacccagcccgtggttgctggagggcctagccaccattacgcaaagcctcgtgggccctctggtggggcaaacagatatccacctggtggaaatcctggtgggggataccaccctaatcggggtggtcaaggtggtggaggtggctacggcagtggcccatatcctgcacaaggacggggtggtgcaccatttggttctagtggtctgcctggtgctggtccccggggtggaggcagtggatacggagttggaggtccaaactatcctcaaaatggtccatatggtggttctggttctggtcgggggtcaaacatgatgggtggaaaccgcaatcaacagtatggttggcagcctgtcaactctggtgactggtttttggatcttgaggtgctgatgaatccaacagagggagaagcttccatgtttgtgcacgggtatttgattggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

292

Amino Acids

31.63

Weight (kDa)

9.69

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10270 AT5G64960 AT5G64960
fragaria_vesca	FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_1g20740 FvH4_4g11370 FvH4_4g11370 FvH4_4g11370
malus_domestica	MD04G1037600.v1.1 MD15G1318300.v1.1
prunus_persica	Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.1G186900_v2.0.a1 Prupe.6G187600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0113361 RchiOBHm_Chr2g0113381 RchiOBHm_Chr4g0407881
rosa_laevigata	RLG00000008692 RLG00000018058
rosa_multiflora	Rmu_sc0002073.1_g000029 Rmu_sc0007621.1_g000001 Rmu_sc0011967.1_g000006 Rmu_sc0029075.1_g000002 Rmu_sc0029867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129320 Rroxscaffold_2G00129850 Rroxscaffold_5G00352420
rosa_rugosa	Rorug02G0186500 Rorug04G0081800 Rorug04G0081900
rosa_samantha	Rh2AG241100 Rh2BG255300 Rh2CG245400 Rh2DG249100 Rh4AG147000 Rh4BG144500 Rh4CG153800 Rh4DG141000
rosa_wichuraiana	Rw2G018830 Rw4G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	428
AccB1I	GGYRCC	1 cut(s)	428
AccB7I	CCANNNNNTGG	4 cut(s)	130, 439, 515, 713
AccI	GTMKAC	1 cut(s)	244
AciI	CCGC	3 cut(s)	121, 362, 757
AclWI	GGATC	4 cut(s)	155, 212, 227, 816
AcyI	GRCGYC	1 cut(s)	91
AdeI	CACNNNGTG	1 cut(s)	515
AfaI	GTAC	1 cut(s)	430
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	5 cut(s)	31, 403, 511, 523, 637
AluBI	AGCT	2 cut(s)	11, 845
AluI	AGCT	2 cut(s)	11, 845
Alw21I	GWGCWC	3 cut(s)	13, 616, 861
Alw26I	GTCTC	1 cut(s)	82
Alw44I	GTGCAC	2 cut(s)	612, 857
AlwI	GGATC	4 cut(s)	155, 212, 227, 816
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	651
AoxI	GGCC	6 cut(s)	29, 77, 401, 452, 482, 583
ApaI	GGGCCC	1 cut(s)	486
ApaLI	GTGCAC	2 cut(s)	612, 857
ApeKI	GCWGC	1 cut(s)	778
Asp718I	GGTACC	1 cut(s)	428
AspS9I	GGNCC	8 cut(s)	407, 452, 482, 483, 584, 647, 683, 704
AsuC2I	CCSGG	2 cut(s)	652, 653
AsuHPI	GGTGA	1 cut(s)	806
AvaI	CYCGRG	1 cut(s)	651
AvaII	GGWCC	4 cut(s)	407, 647, 683, 704
AxyI	CCTNAGG	1 cut(s)	95
BaeGI	GKGCMC	3 cut(s)	486, 616, 861
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	2 cut(s)	13, 486
BarI	GAAGNNNNNNTAC	2 cut(s)	47, 79
BauI	CACGAG	2 cut(s)	266, 477
Bbv12I	GWGCWC	3 cut(s)	13, 616, 861
BbvI	GCAGC	1 cut(s)	790
BccI	CCATC	1 cut(s)	739
BceAI	ACGGC	3 cut(s)	317, 416, 592
BciT130I	CCWGG	5 cut(s)	33, 405, 513, 525, 639
BciVI	GTATCC	2 cut(s)	527, 662
BcnI	CCSGG	2 cut(s)	652, 653
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	3 cut(s)	456, 627, 877
BfuI	GTATCC	2 cut(s)	527, 662
BglI	GCCNNNNNGGC	2 cut(s)	76, 481
BisI	GCNGC	1 cut(s)	779
BlsI	GCNGC	1 cut(s)	780
Bme1390I	CCNGG	7 cut(s)	33, 405, 513, 525, 639, 652, 653
Bme18I	GGWCC	4 cut(s)	407, 647, 683, 704
BmeT110I	CYCGRG	1 cut(s)	651
BmgT120I	GGNCC	8 cut(s)	407, 452, 482, 483, 584, 647, 683, 704
BmiI	GGNNCC	3 cut(s)	430, 484, 649
BmrFI	CCNGG	7 cut(s)	33, 405, 513, 525, 639, 652, 653
BmsI	GCATC	2 cut(s)	138, 187
BpmI	CTGGAG	2 cut(s)	54, 468
Bpu10I	CCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	833
BpuMI	CCSGG	2 cut(s)	652, 653
BsaHI	GRCGYC	1 cut(s)	91
BsaJI	CCNNGG	5 cut(s)	50, 438, 650, 651, 652
Bse1I	ACTGG	2 cut(s)	32, 803
Bse21I	CCTNAGG	1 cut(s)	95
BseBI	CCWGG	5 cut(s)	33, 405, 513, 525, 639
BseDI	CCNNGG	5 cut(s)	50, 438, 650, 651, 652
BseGI	GGATG	1 cut(s)	153
BseMII	CTCAG	3 cut(s)	109, 182, 192
BseNI	ACTGG	2 cut(s)	32, 803
BseSI	GKGCMC	3 cut(s)	486, 616, 861
BseXI	GCAGC	1 cut(s)	790
BseYI	CCCAGC	1 cut(s)	432
BsgI	GTGCAG	1 cut(s)	579
BshFI	GGCC	6 cut(s)	31, 79, 403, 454, 484, 585
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	3 cut(s)	13, 616, 861
BsiHKCI	CYCGRG	1 cut(s)	651
BsiSI	CCGG	1 cut(s)	652
BslFI	GGGAC	1 cut(s)	633
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	633
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	6 cut(s)	31, 79, 403, 454, 484, 585
BsoBI	CYCGRG	1 cut(s)	651
Bsp120I	GGGCCC	1 cut(s)	482
Bsp1286I	GDGCHC	4 cut(s)	13, 486, 616, 861
Bsp143I	GATC	4 cut(s)	160, 217, 232, 808
BspACI	CCGC	3 cut(s)	121, 362, 757
BspANI	GGCC	6 cut(s)	31, 79, 403, 454, 484, 585
BspCNI	CTCAG	3 cut(s)	108, 181, 193
BspLI	GGNNCC	3 cut(s)	430, 484, 649
BspPI	GGATC	4 cut(s)	155, 212, 227, 816
BspT107I	GGYRCC	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	32, 803
BssECI	CCNNGG	5 cut(s)	50, 438, 650, 651, 652
BssMI	GATC	4 cut(s)	160, 217, 232, 808
BssNI	GRCGYC	1 cut(s)	91
BssSI	CACGAG	2 cut(s)	266, 477
BssT1I	CCWWGG	1 cut(s)	50
Bst2BI	CACGAG	2 cut(s)	266, 477
Bst2UI	CCWGG	5 cut(s)	33, 405, 513, 525, 639
Bst4CI	ACNGT	2 cut(s)	228, 768
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	91
BstDEI	CTNAG	4 cut(s)	95, 168, 183, 201
BstDSI	CCRYGG	1 cut(s)	438
BstENI	CCTNNNNNAGG	2 cut(s)	98, 597
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	4 cut(s)	163, 220, 235, 811
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	4 cut(s)	160, 217, 232, 808
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 188, 197, 301, 370, 481
BstNI	CCWGG	5 cut(s)	33, 405, 513, 525, 639
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	7 cut(s)	31, 403, 511, 523, 637, 650, 651
BstSLI	GKGCMC	3 cut(s)	486, 616, 861
BstV1I	GCAGC	1 cut(s)	790
BstX2I	RGATCY	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	808
Bsu36I	CCTNAGG	1 cut(s)	95
BsuI	GTATCC	2 cut(s)	527, 662
BsuRI	GGCC	6 cut(s)	31, 79, 403, 454, 484, 585
BtgI	CCRYGG	1 cut(s)	438
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	153
BtsI	GCAGTG	2 cut(s)	586, 670
BtsIMutI	CAGTG	2 cut(s)	586, 670
CaiI	CAGNNNCTG	1 cut(s)	334
Cfr13I	GGNCC	8 cut(s)	407, 452, 482, 483, 584, 647, 683, 704
Cfr9I	CCCGGG	1 cut(s)	651
CseI	GACGC	3 cut(s)	99, 197, 278
CsiI	ACCWGGT	1 cut(s)	511
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	6 cut(s)	125, 308, 389, 425, 742, 850
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	4 cut(s)	95, 168, 183, 201
DpnI	GATC	4 cut(s)	162, 219, 234, 810
DpnII	GATC	4 cut(s)	160, 217, 232, 808
DraIII	CACNNNGTG	1 cut(s)	515
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	1 cut(s)	351
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	50
Eco147I	AGGCCT	1 cut(s)	79
Eco24I	GRGCYC	2 cut(s)	13, 486
Eco32I	GATATC	1 cut(s)	506
Eco47I	GGWCC	4 cut(s)	407, 647, 683, 704
Eco53kI	GAGCTC	1 cut(s)	11
Eco81I	CCTNAGG	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	651
EcoICRI	GAGCTC	1 cut(s)	11
EcoNI	CCTNNNNNAGG	2 cut(s)	98, 597
EcoO109I	RGGNCCY	2 cut(s)	452, 483
EcoRII	CCWGG	5 cut(s)	31, 403, 511, 523, 637
EcoRV	GATATC	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	50
EcoT38I	GRGCYC	2 cut(s)	13, 486
ErhI	CCWWGG	1 cut(s)	50
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	6 cut(s)	128, 311, 392, 428, 745, 853
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	6 cut(s)	124, 307, 388, 424, 741, 849
FauNDI	CATATG	1 cut(s)	709
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	779
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	2 cut(s)	13, 486
Fsp4HI	GCNGC	1 cut(s)	779
FspBI	CTAG	3 cut(s)	456, 627, 877
GluI	GCNGC	1 cut(s)	779
GsaI	CCCAGC	1 cut(s)	436
GsuI	CTGGAG	2 cut(s)	54, 468
HaeIII	GGCC	6 cut(s)	31, 79, 403, 454, 484, 585
HapII	CCGG	1 cut(s)	652
HgaI	GACGC	3 cut(s)	99, 197, 278
Hin1I	GRCGYC	1 cut(s)	91
Hin1II	CATG	6 cut(s)	128, 311, 392, 428, 745, 853
HincII	GTYRAC	2 cut(s)	25, 787
HindII	GTYRAC	2 cut(s)	25, 787
HindIII	AAGCTT	1 cut(s)	843
HinfI	GANTC	4 cut(s)	46, 241, 257, 826
HpaII	CCGG	1 cut(s)	652
HphI	GGTGA	1 cut(s)	806
Hpy166II	GTNNAC	5 cut(s)	25, 245, 614, 787, 859
Hpy188I	TCNGA	3 cut(s)	110, 171, 330
Hpy188III	TCNNGA	3 cut(s)	14, 378, 812
Hpy8I	GTNNAC	5 cut(s)	25, 245, 614, 787, 859
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	2 cut(s)	228, 768
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	5 cut(s)	320, 337, 596, 614, 859
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 188, 197, 301, 370, 481
HpyF3I	CTNAG	4 cut(s)	95, 168, 183, 201
HpySE526I	ACGT	1 cut(s)	325
Hsp92I	GRCGYC	1 cut(s)	91
Hsp92II	CATG	6 cut(s)	128, 311, 392, 428, 745, 853
KpnI	GGTACC	1 cut(s)	432
Kzo9I	GATC	4 cut(s)	160, 217, 232, 808
LmnI	GCTCC	2 cut(s)	8, 16
Lsp1109I	GCAGC	1 cut(s)	790
LweI	GCATC	2 cut(s)	138, 187
MabI	ACCWGGT	1 cut(s)	511
MaeI	CTAG	3 cut(s)	456, 627, 877
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	37, 794
MalI	GATC	4 cut(s)	162, 219, 234, 810
MboI	GATC	4 cut(s)	160, 217, 232, 808
MboII	GAAGA	2 cut(s)	97, 323
MflI	RGATCY	1 cut(s)	808
MhlI	GDGCHC	4 cut(s)	13, 486, 616, 861
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	4 cut(s)	111, 120, 658, 854
MslI	CAYNNNNRTG	2 cut(s)	226, 854
MspI	CCGG	1 cut(s)	652
MspR9I	CCNGG	7 cut(s)	33, 405, 513, 525, 639, 652, 653
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	5 cut(s)	33, 405, 513, 525, 639
MwoI	GCNNNNNNNGC	6 cut(s)	76, 188, 197, 301, 370, 481
NciI	CCSGG	2 cut(s)	652, 653
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	4 cut(s)	160, 217, 232, 808
NlaIII	CATG	6 cut(s)	128, 311, 392, 428, 745, 853
NlaIV	GGNNCC	3 cut(s)	430, 484, 649
NmuCI	GTSAC	1 cut(s)	794
NspI	RCATGY	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	79
PctI	GAATGC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	46, 257, 826
PflMI	CCANNNNNTGG	4 cut(s)	130, 439, 515, 713
PkrI	GCNGC	1 cut(s)	780
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	5 cut(s)	31, 403, 511, 523, 637
PspFI	CCCAGC	1 cut(s)	432
PspGI	CCWGG	5 cut(s)	31, 403, 511, 523, 637
PspN4I	GGNNCC	3 cut(s)	430, 484, 649
PspOMI	GGGCCC	1 cut(s)	482
PspPI	GGNCC	8 cut(s)	407, 452, 482, 483, 584, 647, 683, 704
PstNI	CAGNNNCTG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	808
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
RseI	CAYNNNNRTG	2 cut(s)	226, 854
SacI	GAGCTC	1 cut(s)	13
SatI	GCNGC	1 cut(s)	779
Sau3AI	GATC	4 cut(s)	160, 217, 232, 808
Sau96I	GGNCC	8 cut(s)	407, 452, 482, 483, 584, 647, 683, 704
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	7 cut(s)	33, 405, 513, 525, 639, 652, 653
SduI	GDGCHC	4 cut(s)	13, 486, 616, 861
SexAI	ACCWGGT	1 cut(s)	511
SfaNI	GCATC	2 cut(s)	138, 187
SinI	GGWCC	4 cut(s)	407, 647, 683, 704
SmaI	CCCGGG	1 cut(s)	653
SmiMI	CAYNNNNRTG	2 cut(s)	226, 854
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	3 cut(s)	121, 362, 757
SspMI	CTAG	3 cut(s)	456, 627, 877
SstI	GAGCTC	1 cut(s)	13
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	7 cut(s)	31, 403, 511, 523, 637, 650, 651
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	2 cut(s)	228, 768
TaiI	ACGT	1 cut(s)	328
TfiI	GAWTC	3 cut(s)	46, 257, 826
TscAI	CASTG	2 cut(s)	586, 670
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	1 cut(s)	778
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	5 cut(s)	98, 270, 324, 413, 839
TspGWI	ACGGA	1 cut(s)	687
TspMI	CCCGGG	1 cut(s)	651
TspRI	CASTG	2 cut(s)	586, 670
Van91I	CCANNNNNTGG	4 cut(s)	130, 439, 515, 713
VneI	GTGCAC	2 cut(s)	612, 857
VpaK11BI	GGWCC	4 cut(s)	407, 647, 683, 704
XagI	CCTNNNNNAGG	2 cut(s)	98, 597
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	2 cut(s)	401, 422
XmaI	CCCGGG	1 cut(s)	651
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	3 cut(s)	456, 627, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.