Rmu_sc0011967.1_g000006

Cyclin-dependent kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011967.1
Physical Location & Seq
Reverse (-)
14462 .. 18278
3817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011967.1_g000006.1.cds

Sequence Viewer

Length: 1419 bp
atgcttactttctttctccttttcaatcatgggtgtttatacagccaagtcttcaaggccagagaaatcagaacaggtgaaattgttgctttgaaaaggatacgtatggataatgaaaaagaagggtttcctattacagcaattcgggaaattaagcttctgaagaagcttcatcatgaaaatattattaagctgaaagagattgtaacttctgcaggtcctgaaaagaatgatcaagagaatcaagatagtaaaaagcttgaggggggcatctatatggtttttgagtatatggatcatgatttgacaggccttgctgatcgtcctggagttagattttcaattccccagataaagtgttatatgaagcagttgttaactgggcttcattactgtcatgttaatcaagtacttcatcgcgacatgaaaggttctaatcttttgttagataatgagggaaaattgaagctagcagactttgggctcgcaaaatcctttgctaccaaccatgacgggcagcttacaaatcgtgttattaccttgtggtataggcccccagagttgctgcttggagctacaaagtatggaccagctgtcgacatgtggtctgttggttgcatctttgctgaacttctgaatggttcgccaattttgcaaggaagaactgaacctgaccaactgaacaagatatttgagctttgtggatcgcctgatgagaacaactggcctggtgtttcaaaatattatttttataacaatttcaagccaccaaggcccctgaagcgacgagtcagggaacgtttcagacgttttgacagccatgctcttgatttactggaccacttgttaactcttgatccaaatcagagatggtctgcaaagcaagcactggatgcagagtatttctgggttgatcctttaccttgtgatccgaagagcctgcccaagtatgaatcatcgcatgagtttgaaacaaagaaaaggaagcaggaacagcgacaacttgaagaacaaaacaagagaccaagattacaacatggtcgcctgcctccctatcaacatacagagcctcatcaaatgaaagatacacagccatcattttctgctggacctagtcaccacccctatggaaagcatcctgctcctcctggaggtccaagcatgtaccctcctaggaatcagagtggggcttacaacccaagccgtggaggtcatgttggaggatacagtggtgaaccatatccacctcaaggacgggctccacaatataatggcagcagtatgccagcttctggtcctagaggtccccccggtggttacggagttggtcctcctaactattcccaaactagtcagtatggaggtcctgcccctggtagaggtctgaataatcggagtcaacagtatggccggcagtaa

Protein Analysis

472

Amino Acids

53.6

Weight (kDa)

9.3

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
Acc36I ACCTGC 1 cut(s) 206
AccB7I CCANNNNNTGG 2 cut(s) 1205, 1292
AccI GTMKAC 1 cut(s) 597
AccII CGCG 1 cut(s) 420
AclI AACGTT 1 cut(s) 799
AclWI GGATC 5 cut(s) 303, 712, 851, 908, 923
AcoI YGGCCR 1 cut(s) 1408
AcuI CTGAAG 2 cut(s) 182, 800
AfaI GTAC 2 cut(s) 411, 1166
AfiI CCNNNNNNNGG 7 cut(s) 1151, 1205, 1250, 1292, 1313, 1373, 1379
AflIII ACRYGT 1 cut(s) 600
AgsI TTSAA 9 cut(s) 25, 55, 94, 342, 466, 738, 763, 971, 1007
AhdI GACNNNNNGTC 2 cut(s) 593, 604
AhlI ACTAGT 1 cut(s) 1349
AjnI CCWGG 4 cut(s) 325, 727, 1147, 1372
Alw26I GTCTC 1 cut(s) 1015
AlwI GGATC 5 cut(s) 303, 712, 851, 908, 923
AlwNI CAGNNNCTG 2 cut(s) 221, 1292
AoxI GGCC 6 cut(s) 57, 310, 551, 725, 773, 1408
ApeKI GCWGC 3 cut(s) 517, 565, 1275
Asp700I GAANNNNTTC 1 cut(s) 126
AspA2I CCTAGG 1 cut(s) 1172
AsuC2I CCSGG 1 cut(s) 1311
AsuHPI GGTGA 3 cut(s) 89, 1109, 1244
AsuNHI GCTAGC 1 cut(s) 469
AvaII GGWCC 9 cut(s) 218, 587, 838, 1109, 1154, 1295, 1304, 1328, 1364
AvrII CCTAGG 1 cut(s) 1172
BaeI ACNNNNGTAYC 2 cut(s) 1216, 1249
BanII GRGCYC 2 cut(s) 486, 1261
BarI GAAGNNNNNNTAC 2 cut(s) 1273, 1305
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 3 cut(s) 529, 552, 1287
BccI CCATC 2 cut(s) 864, 1102
BceAI ACGGC 1 cut(s) 1188
BcgI CGANNNNNNTGC 2 cut(s) 922, 956
BciT130I CCWGG 4 cut(s) 327, 729, 1149, 1374
BciVI GTATCC 2 cut(s) 93, 1217
BclI TGATCA 1 cut(s) 232
BcnI CCSGG 1 cut(s) 1311
BcoDI GTCTC 1 cut(s) 1015
BcuI ACTAGT 1 cut(s) 1349
BfaI CTAG 5 cut(s) 470, 1113, 1173, 1299, 1350
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 206
BfuI GTATCC 2 cut(s) 93, 1217
BglI GCCNNNNNGGC 1 cut(s) 772
BisI GCNGC 3 cut(s) 518, 566, 1276
BlnI CCTAGG 1 cut(s) 1172
BlsI GCNGC 3 cut(s) 519, 567, 1277
BmcAI AGTACT 1 cut(s) 411
Bme1390I CCNGG 5 cut(s) 327, 729, 1149, 1311, 1374
Bme18I GGWCC 9 cut(s) 218, 587, 838, 1109, 1154, 1295, 1304, 1328, 1364
BmeRI GACNNNNNGTC 2 cut(s) 593, 604
BmiI GGNNCC 4 cut(s) 554, 776, 1260, 1306
BmrFI CCNGG 5 cut(s) 327, 729, 1149, 1311, 1374
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 4 cut(s) 279, 627, 883, 1144
BmtI GCTAGC 1 cut(s) 473
BmuI ACTGGG 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 2 cut(s) 348, 1170
BpuEI CTTGAG 2 cut(s) 281, 1233
BpuMI CCSGG 1 cut(s) 1311
BsaAI YACGTR 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 1015
BsaJI CCNNGG 5 cut(s) 770, 1172, 1204, 1309, 1372
BsaXI ACNNNNNCTCC 2 cut(s) 1200, 1230
Bsc4I CCNNNNNNNGG 7 cut(s) 1151, 1205, 1250, 1292, 1313, 1373, 1379
Bse118I RCCGGY 1 cut(s) 1410
Bse1I ACTGG 4 cut(s) 385, 728, 840, 894
Bse8I GATNNNNATC 1 cut(s) 861
BseBI CCWGG 4 cut(s) 327, 729, 1149, 1374
BseDI CCNNGG 5 cut(s) 770, 1172, 1204, 1309, 1372
BseGI GGATG 2 cut(s) 898, 1135
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 7 cut(s) 1151, 1205, 1250, 1292, 1313, 1373, 1379
BseNI ACTGG 4 cut(s) 385, 728, 840, 894
BseRI GAGGAG 1 cut(s) 1134
BseXI GCAGC 3 cut(s) 529, 552, 1287
Bsh1236I CGCG 1 cut(s) 420
BshFI GGCC 6 cut(s) 59, 312, 553, 727, 775, 1410
BsiSI CCGG 2 cut(s) 1311, 1411
BslFI GGGAC 1 cut(s) 1290
BslI CCNNNNNNNGG 7 cut(s) 1151, 1205, 1250, 1292, 1313, 1373, 1379
BsmAI GTCTC 1 cut(s) 1015
BsmFI GGGAC 1 cut(s) 1290
BsnI GGCC 6 cut(s) 59, 312, 553, 727, 775, 1410
Bso31I GGTCTC 1 cut(s) 1015
Bsp1286I GDGCHC 2 cut(s) 486, 1261
Bsp143I GATC 7 cut(s) 232, 295, 319, 704, 856, 913, 928
Bsp68I TCGCGA 1 cut(s) 420
BspANI GGCC 6 cut(s) 59, 312, 553, 727, 775, 1410
BspFNI CGCG 1 cut(s) 420
BspHI TCATGA 2 cut(s) 175, 298
BspLI GGNNCC 4 cut(s) 554, 776, 1260, 1306
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 206
BspOI GCTAGC 1 cut(s) 473
BspPI GGATC 5 cut(s) 303, 712, 851, 908, 923
BspQI GCTCTTC 1 cut(s) 929
BspTNI GGTCTC 1 cut(s) 1015
BsrFI RCCGGY 1 cut(s) 1410
BsrI ACTGG 4 cut(s) 385, 728, 840, 894
BssAI RCCGGY 1 cut(s) 1410
BssECI CCNNGG 5 cut(s) 770, 1172, 1204, 1309, 1372
BssMI GATC 7 cut(s) 232, 295, 319, 704, 856, 913, 928
BssT1I CCWWGG 2 cut(s) 770, 1172
Bst2UI CCWGG 4 cut(s) 327, 729, 1149, 1374
Bst4CI ACNGT 3 cut(s) 395, 1229, 1404
Bst6I CTCTTC 1 cut(s) 929
BstAPI GCANNNNNTGC 1 cut(s) 893
BstBAI YACGTR 1 cut(s) 104
BstC8I GCNNGC 7 cut(s) 471, 486, 885, 941, 1046, 1287, 1412
BstDSI CCRYGG 1 cut(s) 1204
BstENI CCTNNNNNAGG 2 cut(s) 1149, 1377
BstF5I GGATG 2 cut(s) 898, 1135
BstFNI CGCG 1 cut(s) 420
BstKTI GATC 7 cut(s) 235, 298, 322, 707, 859, 916, 931
BstMAI GTCTC 1 cut(s) 1015
BstMBI GATC 7 cut(s) 232, 295, 319, 704, 856, 913, 928
BstMWI GCNNNNNNNGC 6 cut(s) 652, 772, 781, 884, 893, 994
BstNI CCWGG 4 cut(s) 327, 729, 1149, 1374
BstNSI RCATGY 2 cut(s) 604, 1165
BstSCI CCNGG 5 cut(s) 325, 727, 1147, 1309, 1372
BstSFI CTRYAG 1 cut(s) 213
BstSNI TACGTA 1 cut(s) 104
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 3 cut(s) 529, 552, 1287
BstV2I GAAGAC 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 1127
BsuI GTATCC 2 cut(s) 93, 1217
BsuRI GGCC 6 cut(s) 59, 312, 553, 727, 775, 1410
BtgI CCRYGG 1 cut(s) 1204
BtgZI GCGATG 2 cut(s) 401, 942
BtsCI GGATG 2 cut(s) 898, 1135
BtsIMutI CAGTG 2 cut(s) 887, 1234
BtuMI TCGCGA 1 cut(s) 420
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 7 cut(s) 471, 486, 885, 941, 1046, 1287, 1412
CaiI CAGNNNCTG 2 cut(s) 221, 1292
CciI TCATGA 2 cut(s) 175, 298
Cfr10I RCCGGY 1 cut(s) 1410
Csp6I GTAC 2 cut(s) 410, 1165
CviQI GTAC 2 cut(s) 410, 1165
DpnI GATC 7 cut(s) 234, 297, 321, 706, 858, 915, 930
DpnII GATC 7 cut(s) 232, 295, 319, 704, 856, 913, 928
DriI GACNNNNNGTC 2 cut(s) 593, 604
EaeI YGGCCR 1 cut(s) 1408
Eam1104I CTCTTC 1 cut(s) 929
Eam1105I GACNNNNNGTC 2 cut(s) 593, 604
EarI CTCTTC 1 cut(s) 929
Eco105I TACGTA 1 cut(s) 104
Eco130I CCWWGG 2 cut(s) 770, 1172
Eco147I AGGCCT 1 cut(s) 312
Eco24I GRGCYC 2 cut(s) 486, 1261
Eco31I GGTCTC 1 cut(s) 1015
Eco47I GGWCC 9 cut(s) 218, 587, 838, 1109, 1154, 1295, 1304, 1328, 1364
Eco57I CTGAAG 2 cut(s) 182, 800
EcoNI CCTNNNNNAGG 2 cut(s) 1149, 1377
EcoO109I RGGNCCY 5 cut(s) 218, 552, 774, 1304, 1364
EcoRII CCWGG 4 cut(s) 325, 727, 1147, 1372
EcoT14I CCWWGG 2 cut(s) 770, 1172
EcoT38I GRGCYC 2 cut(s) 486, 1261
ErhI CCWWGG 2 cut(s) 770, 1172
FaqI GGGAC 1 cut(s) 1290
FbaI TGATCA 1 cut(s) 232
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 3 cut(s) 518, 566, 1276
FokI GGATG 2 cut(s) 905, 1122
FriOI GRGCYC 2 cut(s) 486, 1261
Fsp4HI GCNGC 3 cut(s) 518, 566, 1276
FspBI CTAG 5 cut(s) 470, 1113, 1173, 1299, 1350
GluI GCNGC 3 cut(s) 518, 566, 1276
GsuI CTGGAG 2 cut(s) 348, 1170
HaeIII GGCC 6 cut(s) 59, 312, 553, 727, 775, 1410
HapII CCGG 2 cut(s) 1311, 1411
HincII GTYRAC 4 cut(s) 378, 598, 849, 1400
HindII GTYRAC 4 cut(s) 378, 598, 849, 1400
HindIII AAGCTT 3 cut(s) 155, 167, 257
HinfI GANTC 5 cut(s) 241, 789, 953, 1177, 1396
HpaI GTTAAC 2 cut(s) 378, 849
HpaII CCGG 2 cut(s) 1311, 1411
HphI GGTGA 3 cut(s) 89, 1109, 1244
Hpy166II GTNNAC 5 cut(s) 378, 598, 849, 1235, 1400
Hpy188I TCNGA 9 cut(s) 71, 162, 636, 806, 867, 933, 1182, 1386, 1395
Hpy188III TCNNGA 9 cut(s) 146, 176, 221, 236, 245, 299, 419, 827, 854
Hpy8I GTNNAC 5 cut(s) 378, 598, 849, 1235, 1400
Hpy99I CGWCG 1 cut(s) 789
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 3 cut(s) 395, 1229, 1404
HpyCH4IV ACGT 3 cut(s) 103, 799, 808
HpyCH4V TGCA 5 cut(s) 215, 618, 655, 878, 896
HpyF10VI GCNNNNNNNGC 6 cut(s) 652, 772, 781, 884, 893, 994
HpySE526I ACGT 3 cut(s) 103, 799, 808
KroI GCCGGC 1 cut(s) 1410
KroNI GCCGGC 1 cut(s) 1412
Ksp22I TGATCA 1 cut(s) 232
KspAI GTTAAC 2 cut(s) 378, 849
Kzo9I GATC 7 cut(s) 232, 295, 319, 704, 856, 913, 928
LguI GCTCTTC 1 cut(s) 929
LmnI GCTCC 3 cut(s) 572, 1147, 1264
Lsp1109I GCAGC 3 cut(s) 529, 552, 1287
LweI GCATC 4 cut(s) 279, 627, 883, 1144
MaeI CTAG 5 cut(s) 470, 1113, 1173, 1299, 1350
MaeII ACGT 3 cut(s) 103, 799, 808
MaeIII GTNAC 3 cut(s) 205, 1115, 1316
MalI GATC 7 cut(s) 234, 297, 321, 706, 858, 915, 930
MboI GATC 7 cut(s) 232, 295, 319, 704, 856, 913, 928
MboII GAAGA 5 cut(s) 43, 175, 672, 946, 1019
MhlI GDGCHC 2 cut(s) 486, 1261
MluCI AATT 7 cut(s) 81, 141, 150, 342, 461, 648, 757
MlyI GAGTC 2 cut(s) 798, 1405
MmeI TCCRAC 1 cut(s) 1198
MroNI GCCGGC 1 cut(s) 1410
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 5 cut(s) 153, 189, 377, 402, 848
MslI CAYNNNNRTG 2 cut(s) 275, 1125
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 2 cut(s) 1311, 1411
MspR9I CCNGG 5 cut(s) 327, 729, 1149, 1311, 1374
MvaI CCWGG 4 cut(s) 327, 729, 1149, 1374
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 6 cut(s) 652, 772, 781, 884, 893, 994
NaeI GCCGGC 1 cut(s) 1412
NciI CCSGG 1 cut(s) 1311
NdeII GATC 7 cut(s) 232, 295, 319, 704, 856, 913, 928
NgoMIV GCCGGC 1 cut(s) 1410
NheI GCTAGC 1 cut(s) 469
NlaIV GGNNCC 4 cut(s) 554, 776, 1260, 1306
NmuCI GTSAC 1 cut(s) 1115
NruI TCGCGA 1 cut(s) 420
NspI RCATGY 2 cut(s) 604, 1165
PagI TCATGA 2 cut(s) 175, 298
PceI AGGCCT 1 cut(s) 312
PciI ACATGT 1 cut(s) 600
PciSI GCTCTTC 1 cut(s) 929
PcsI WCGNNNNNNNCGW 1 cut(s) 805
PdiI GCCGGC 1 cut(s) 1412
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 3 cut(s) 241, 953, 1177
PflFI GACNNNGTC 1 cut(s) 1113
PflMI CCANNNNNTGG 2 cut(s) 1205, 1292
PfoI TCCNGGA 2 cut(s) 325, 1147
PkrI GCNGC 3 cut(s) 519, 567, 1277
PleI GAGTC 2 cut(s) 797, 1404
PpsI GAGTC 2 cut(s) 797, 1404
Ppu21I YACGTR 1 cut(s) 104
PpuMI RGGWCCY 3 cut(s) 218, 1304, 1364
PscI ACATGT 1 cut(s) 600
PsiI TTATAA 1 cut(s) 753
Psp1406I AACGTT 1 cut(s) 799
Psp5II RGGWCCY 3 cut(s) 218, 1304, 1364
Psp6I CCWGG 4 cut(s) 325, 727, 1147, 1372
PspGI CCWGG 4 cut(s) 325, 727, 1147, 1372
PspN4I GGNNCC 4 cut(s) 554, 776, 1260, 1306
PspPPI RGGWCCY 3 cut(s) 218, 1304, 1364
PstI CTGCAG 1 cut(s) 217
PstNI CAGNNNCTG 2 cut(s) 221, 1292
PsyI GACNNNGTC 1 cut(s) 1113
PvuII CAGCTG 1 cut(s) 593
RruI TCGCGA 1 cut(s) 420
RsaI GTAC 2 cut(s) 411, 1166
RsaNI GTAC 2 cut(s) 410, 1165
RseI CAYNNNNRTG 2 cut(s) 275, 1125
SalI GTCGAC 1 cut(s) 596
SapI GCTCTTC 1 cut(s) 929
SaqAI TTAA 5 cut(s) 153, 189, 377, 402, 848
SatI GCNGC 3 cut(s) 518, 566, 1276
Sau3AI GATC 7 cut(s) 232, 295, 319, 704, 856, 913, 928
ScaI AGTACT 1 cut(s) 411
SchI GAGTC 2 cut(s) 798, 1405
ScrFI CCNGG 5 cut(s) 327, 729, 1149, 1311, 1374
SduI GDGCHC 2 cut(s) 486, 1261
SfaNI GCATC 4 cut(s) 279, 627, 883, 1144
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 9 cut(s) 218, 587, 838, 1109, 1154, 1295, 1304, 1328, 1364
SmiMI CAYNNNNRTG 2 cut(s) 275, 1125
SmlI CTYRAG 2 cut(s) 260, 1248
SmoI CTYRAG 2 cut(s) 260, 1248
SnaBI TACGTA 1 cut(s) 104
SpeI ACTAGT 1 cut(s) 1349
Sse9I AATT 7 cut(s) 81, 141, 150, 342, 461, 648, 757
SseBI AGGCCT 1 cut(s) 312
SspI AATATT 2 cut(s) 184, 743
SspMI CTAG 5 cut(s) 470, 1113, 1173, 1299, 1350
StuI AGGCCT 1 cut(s) 312
StyD4I CCNGG 5 cut(s) 325, 727, 1147, 1309, 1372
StyI CCWWGG 2 cut(s) 770, 1172
TaaI ACNGT 3 cut(s) 395, 1229, 1404
TaiI ACGT 3 cut(s) 106, 802, 811
TaqI TCGA 1 cut(s) 597
TasI AATT 7 cut(s) 81, 141, 150, 342, 461, 648, 757
TatI WGTACW 1 cut(s) 409
TfiI GAWTC 3 cut(s) 241, 953, 1177
Tru1I TTAA 5 cut(s) 153, 189, 377, 402, 848
Tru9I TTAA 5 cut(s) 153, 189, 377, 402, 848
TscAI CASTG 2 cut(s) 894, 1234
TseFI GTSAC 1 cut(s) 1115
TseI GCWGC 3 cut(s) 517, 565, 1275
Tsp45I GTSAC 1 cut(s) 1115
TspDTI ATGAA 9 cut(s) 129, 161, 192, 377, 380, 404, 440, 966, 1094
TspGWI ACGGA 1 cut(s) 1335
TspRI CASTG 2 cut(s) 894, 1234
Tth111I GACNNNGTC 1 cut(s) 1113
Van91I CCANNNNNTGG 2 cut(s) 1205, 1292
VpaK11BI GGWCC 9 cut(s) 218, 587, 838, 1109, 1154, 1295, 1304, 1328, 1364
XagI CCTNNNNNAGG 2 cut(s) 1149, 1377
XceI RCATGY 2 cut(s) 604, 1165
XcmI CCANNNNNNNNNTGG 1 cut(s) 867
XmaJI CCTAGG 1 cut(s) 1172
XmiI GTMKAC 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 5 cut(s) 470, 1113, 1173, 1299, 1350
ZrmI AGTACT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.