Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003840

Physical Location & Seq

Genomic Coordinates Forward (+)

16497821 .. 16506961

Gene Structure 9141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24690.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

ATGGCGGAGACGAAGAAGCCGCAAAGCCTCAACGACAGTCACTACCGCCTCCTCCAAGACCTCAGCTCTCCCAAACCCTCCGAGCAACCGAAGGTGACTAAAGTGAGGATCGAAGGCGCGCGCCGTCTCTGTAAGGTTCGAGTGGCTTCCGATGACGACGATGAAGCGCCGAGTTTCTCTCCGAATGTTGATTTCGAGTCGCCGCTGCCGCAGCCGAAAAGGAGTGAGGCTGAGAGAGGCGGTGACGGCGGTGGAAATGAGATTAGGGGGATATTGGATGACCTGAGCTCGAGGCTTGAGTTTCTGTCAATCGAGAAGAGAGGTGCCGGAAAATCTAAGAAGGTAGAAGGTTCTGGTTTTCCGGAGGAGGATGGTTATAAGGATGCGGCGCCGTCGTTTTCCATTGCTTCCGACTTGTCTGATTCGTCTGCTGAGACCACTAAGCCTCGTAGGAAGGGAGTTGTGAGTAATGTGGGAGATGAGCATGAAGAGAAAAGTGAATTTCGATGCAAGTCTGAGAGTGATGACAGAAATGGAGAGGGTGATGATGACATCGATTGTGTGGTTGTGAGGGCTAAGAAGACAGAGAAAGAAGCAAGGAGGCGGGGTGGTAGCTATAAAGATTACTATGATTGTGATGAGGATAGTGGGGTTGAGGAGTTCAGGGATGAATGTGTTGCGAAGGATGATGGTTCTATCACTATGAGTGGTCTGACATACACTTATAAGTTACCGGGGAAGATTGCAACAATGTTATTTCCGCACCAGCGTGAGGGCTTGAAGTGGCTTTGGGCTCTGCATTGCCAGGGGAAGGGTGGAATCTTAGGAGATGATATGGGCCTTGGAAAAACAATGCAGATTTGTGGCTATTTAGCTGGTTTGTTTCATTCTGGCTTGACTAAAAGGGTGATGGTGGTGGCTCCTAAAACATTACTTTCTCATTGGATAAAAGAATTAACAGCTGTAGGTCTCTCTGACAAGATAAGAGAATACTATGGGACCTGTCCAAAAGCTCGGAAGTATGAGCTTCAATATGTACTTCAGGACAAGGGCATTCTTCTGACAACTTACGATATTGTGCGAGTCAACTTTAAATCTCTTAAAGGGAGTGACTATATTCTCGATGATGGAAGTGAGGATCTGATATGGGATTATATGATACTTGATGAGGGTCATCTCATAAAGAATCCCAGTACACAAAGGGCCAAAAGTTTGCTTGATATACCCTGTTCACATCGCATTATAGTAAGTGGCACGCCGTTGCAAAACAATCTCAAGGAGTTGTGGGCCTTATTTAATTTCTGTTGCCCTGAGCTTCTGGGTGATAAGAAGTGGTTTAAGGAAAAATTTGAGTCGCGCATTTGTCGTGGAAATGAGAAAAATGCTTCAGATAGGGAAAAACGTATTGGTTCCACAGTAGCACAGGAGCTTAGAGACCGTATCCAACCTTTTTTCCTGCGTCGCCTGAAGAATGAGGTGTTTAAGGAAGATAATGACCAAACAAATGCCACACTGTCTAAAAAGAATGAGATCATTGTTTGGCTTCGTTTAACCAACATTCAGCGAAAACTTTATGAAGCATATCTAAAGAGTGAGCTGGTTCTTTCTGCTTTTGATGGGTCACCATTGGCTGCACTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTATTGACGAAGCGAGCTGCTGAAGATGTGCTAGAAGAGTTGGATTCAATGTCTAAGCCAGATGATGTTTCTATGGCAGAAAAACTAGCAATGTATATAGCTGATGTTGCTGAGAAAGAGGAATTTTTTGATGAGAACCATGCAAACCTCTCTTGCAAAATATCTTTCATAATGTCGTTATTGGATAACTTGATTCCCGAGGGGCATAATGTTCTCATCTTTTCCCAAACTAGAAAGATGCTGAATATTATTCAGGAAACACTAATATCCAGTGGGTACAAGTTCCAACGCATTGATGGTACCACAAAAGCTACTGAAAGGATTAGGATTGTTAATGATTTCCAAGAAGGTAATGGGGCTCCCATATTTCTCTTGACTTCTCAAGTTGGTGGTTTGGGTCTTACACTTACAAGAGCTGATCGTGTGATAGTGGTTGATCCTGCTTGGAACCCGAGTACTGATAGCCAAAGTGTGGATCGTGCATATCGAATTGGCCAGAACAAGGATGTGATTGTATATAGATTAATGACTTGTGCGACTGTTGAAGAAAAGATCTACAGAAAACAGATTTACAAAGGAGGATTGTTTAAAACTGCAACTGAGCAGAAGGAGCAGATTCGGTACTTTAGTCAACAGGATCTTCGTGAACTTTTCAGTCTCCCACAACAAGGTTTTGATGTTTCCCTTACTCAGAAGCAGCTAAATGAGGAGCATGATCAACAGTACACAATGGAAGAATCTTTACAATCCCATATAGAATTCTTGGAAACTCAAGGGATAGCTGGTGTCAGTCACCACAGTCTACTCTTTTCCAAGACAGCACCACCTCTGCCAGAGGTAGATGCGGAACAGGAGGAAGTTGAAAGAATTAGACAAACTTTACTCGTGGGAAGCTCAACTTCAAGTTCCGCACTTGAACGTAATGTAAATGGGGCTGAGTACGCTTTCAAGCCTAAGGATGTAATATTAAGCAAGAAGCTGTCTTCTTCACCAGTTAATGCAGGAAAAATGACAAAATCAGAGATTAAAGAGAACATCAATAGGCTGTCACAAACTCTTGCGAATAAGTCTTTGGTTGCAAGATTACCTGATAAGGGACAGAAAATAGAGAGGCAAATATCTGAATTGAATGCTGAGCTTCGTCGATTTGAGAGGGATGTTATTGACTTGGATGATGTAACTGCGGATCTTAAAGGAGTGGTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

960

Amino Acids

108.11

Weight (kDa)

5.73

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	2 - 167	5.1e-29	SNF2-related domain
HDA2-3	PF11496	213 - 351	4.1e-06	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	224 - 333	3.2e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63950 AT5G63950
fragaria_vesca	FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690
malus_domestica	MD15G1135400.v1.1 MD15G1135700.v1.1
prunus_persica	Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1
pyrus_communis	pycom01g00590 pycom15g12200 pycom15g12220
rosa_chinensis	RchiOBHm_Chr2g0122191
rosa_laevigata	RLG00000018669
rosa_multiflora	Rmu_co7987670.1_g000001 Rmu_co8056046.1_g000001 Rmu_sc0000805.1_g000001 Rmu_sc0003133.1_g000012 Rmu_sc0004574.1_g000007 Rmu_sc0013150.1_g000001 Rmu_sc0025362.1_g000002
rosa_roxburghii	Rroxscaffold_2G00121780
rosa_rugosa	Rorug02G0237100
rosa_samantha	Rh2AG295600 Rh2BG304600 Rh2CG282900 Rh2DG319500
rosa_wichuraiana	Rw2G023540 Rw2G023770

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	378, 726
Acc65I	GGTACC	1 cut(s)	1970
AccB1I	GGYRCC	3 cut(s)	323, 388, 1970
AccB7I	CCANNNNNTGG	1 cut(s)	2143
AccI	GTMKAC	1 cut(s)	2473
AccII	CGCG	3 cut(s)	119, 121, 1357
AccIII	TCCGGA	1 cut(s)	361
AclWI	GGATC	6 cut(s)	116, 1146, 2102, 2154, 2316, 2865
AcoI	YGGCCR	1 cut(s)	2164
AcsI	RAATTY	4 cut(s)	500, 1346, 1793, 2429
AcuI	CTGAAG	4 cut(s)	1025, 1371, 1487, 1713
AcyI	GRCGYC	1 cut(s)	389
AfaI	GTAC	8 cut(s)	1038, 1195, 1949, 1972, 2128, 2294, 2396, 2612
AfiI	CCNNNNNNNGG	6 cut(s)	772, 811, 2143, 2173, 2339, 2765
AjnI	CCWGG	1 cut(s)	804
AjuI	GAANNNNNNNTTGG	4 cut(s)	1389, 1421, 2726, 2758
AleI	CACNNNNGTG	1 cut(s)	768
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	6 cut(s)	2, 131, 428, 974, 1428, 2333
AlwI	GGATC	6 cut(s)	116, 1146, 2102, 2154, 2316, 2865
Ama87I	CYCGRG	3 cut(s)	289, 1868, 2122
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	4 cut(s)	838, 1203, 1287, 2164
ApeKI	GCWGC	5 cut(s)	205, 211, 1631, 1688, 2368
ApoI	RAATTY	4 cut(s)	500, 1346, 1793, 2429
AseI	ATTAAT	1 cut(s)	2195
Asp718I	GGTACC	1 cut(s)	1970
AspLEI	GCGC	6 cut(s)	119, 121, 123, 169, 391, 1359
AspS9I	GGNCC	4 cut(s)	838, 999, 1203, 1287
AsuC2I	CCSGG	1 cut(s)	735
AsuHPI	GGTGA	8 cut(s)	106, 254, 554, 919, 1334, 1614, 2456, 2652
AvaI	CYCGRG	3 cut(s)	289, 1868, 2122
AvaII	GGWCC	1 cut(s)	999
AxyI	CCTNAGG	1 cut(s)	2625
BaeI	ACNNNNGTAYC	2 cut(s)	2284, 2317
BalI	TGGCCA	1 cut(s)	2166
BanI	GGYRCC	3 cut(s)	323, 388, 1970
BanII	GRGCYC	3 cut(s)	290, 796, 2032
BarI	GAAGNNNNNNTAC	2 cut(s)	2397, 2429
BauI	CACGAG	1 cut(s)	2555
BbsI	GAAGAC	2 cut(s)	587, 2646
Bbv12I	GWGCWC	1 cut(s)	290
BbvCI	CCTCAGC	1 cut(s)	62
BbvI	GCAGC	5 cut(s)	192, 223, 1618, 1675, 2380
BccI	CCATC	6 cut(s)	365, 683, 904, 1121, 1610, 1961
BceAI	ACGGC	4 cut(s)	108, 262, 376, 1243
BciT130I	CCWGG	1 cut(s)	806
BciVI	GTATCC	1 cut(s)	1451
BclI	TGATCA	2 cut(s)	1660, 2386
BcnI	CCSGG	1 cut(s)	735
BcoDI	GTCTC	6 cut(s)	2, 131, 428, 974, 1428, 2333
BfaI	CTAG	3 cut(s)	1703, 1757, 1902
BfmI	CTRYAG	2 cut(s)	963, 2227
BfoI	RGCGCY	2 cut(s)	170, 392
BfuI	GTATCC	1 cut(s)	1451
BglII	AGATCT	1 cut(s)	2223
BisI	GCNGC	9 cut(s)	20, 203, 206, 209, 212, 387, 1632, 1689, 2369
BlpI	GCTNAGC	1 cut(s)	2805
BlsI	GCNGC	9 cut(s)	21, 204, 207, 210, 213, 388, 1633, 1690, 2370
BmcAI	AGTACT	1 cut(s)	2128
Bme1390I	CCNGG	2 cut(s)	735, 806
Bme18I	GGWCC	1 cut(s)	999
BmeT110I	CYCGRG	3 cut(s)	289, 1868, 2122
BmgT120I	GGNCC	4 cut(s)	838, 999, 1203, 1287
BmiI	GGNNCC	8 cut(s)	325, 390, 921, 1000, 1411, 1972, 2031, 2120
BmrFI	CCNGG	2 cut(s)	735, 806
BmrI	ACTGGG	1 cut(s)	1185
BmsI	GCATC	4 cut(s)	373, 497, 1899, 2503
BmuI	ACTGGG	1 cut(s)	1185
BpiI	GAAGAC	2 cut(s)	587, 2646
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
Bpu10I	CCTNAGC	3 cut(s)	62, 284, 1311
Bpu1102I	GCTNAGC	1 cut(s)	2805
BpuEI	CTTGAG	4 cut(s)	317, 1259, 2037, 2427
BpuMI	CCSGG	1 cut(s)	735
Bsa29I	ATCGAT	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	389
BsaI	GGTCTC	3 cut(s)	428, 974, 1428
BsaJI	CCNNGG	4 cut(s)	734, 805, 841, 1869
BsaWI	WCCGGW	1 cut(s)	361
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bsc4I	CCNNNNNNNGG	6 cut(s)	772, 811, 2143, 2173, 2339, 2765
Bse1I	ACTGG	3 cut(s)	1191, 1941, 2663
Bse21I	CCTNAGG	1 cut(s)	2625
Bse3DI	GCAATG	3 cut(s)	402, 799, 1767
BseAI	TCCGGA	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	806
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	4 cut(s)	734, 805, 841, 1869
BseLI	CCNNNNNNNGG	6 cut(s)	772, 811, 2143, 2173, 2339, 2765
BseMI	GCAATG	3 cut(s)	402, 799, 1767
BseNI	ACTGG	3 cut(s)	1191, 1941, 2663
BsePI	GCGCGC	2 cut(s)	117, 119
BseRI	GAGGAG	4 cut(s)	41, 380, 671, 2393
BseXI	GCAGC	5 cut(s)	192, 223, 1618, 1675, 2380
BsgI	GTGCAG	1 cut(s)	1617
Bsh1236I	CGCG	3 cut(s)	119, 121, 1357
BshFI	GGCC	4 cut(s)	840, 1205, 1289, 2166
BshNI	GGYRCC	3 cut(s)	323, 388, 1970
BshVI	ATCGAT	1 cut(s)	555
BsiHKAI	GWGCWC	1 cut(s)	290
BsiHKCI	CYCGRG	3 cut(s)	289, 1868, 2122
BsiSI	CCGG	3 cut(s)	327, 362, 734
BslFI	GGGAC	2 cut(s)	1012, 2781
BslI	CCNNNNNNNGG	6 cut(s)	772, 811, 2143, 2173, 2339, 2765
BsmAI	GTCTC	6 cut(s)	2, 131, 428, 974, 1428, 2333
BsmBI	CGTCTC	2 cut(s)	2, 131
BsmFI	GGGAC	2 cut(s)	1012, 2781
BsmI	GAATGC	2 cut(s)	1053, 2806
BsnI	GGCC	4 cut(s)	840, 1205, 1289, 2166
Bso31I	GGTCTC	3 cut(s)	428, 974, 1428
BsoBI	CYCGRG	3 cut(s)	289, 1868, 2122
Bsp1286I	GDGCHC	3 cut(s)	290, 796, 2032
Bsp13I	TCCGGA	1 cut(s)	361
Bsp1720I	GCTNAGC	1 cut(s)	2805
BspANI	GGCC	4 cut(s)	840, 1205, 1289, 2166
BspDI	ATCGAT	1 cut(s)	555
BspEI	TCCGGA	1 cut(s)	361
BspFNI	CGCG	3 cut(s)	119, 121, 1357
BspLI	GGNNCC	8 cut(s)	325, 390, 921, 1000, 1411, 1972, 2031, 2120
BspPI	GGATC	6 cut(s)	116, 1146, 2102, 2154, 2316, 2865
BspT107I	GGYRCC	3 cut(s)	323, 388, 1970
BspTNI	GGTCTC	3 cut(s)	428, 974, 1428
BsrDI	GCAATG	3 cut(s)	402, 799, 1767
BsrI	ACTGG	3 cut(s)	1191, 1941, 2663
BssECI	CCNNGG	4 cut(s)	734, 805, 841, 1869
BssHII	GCGCGC	2 cut(s)	117, 119
BssNI	GRCGYC	1 cut(s)	389
BssSI	CACGAG	1 cut(s)	2555
BssT1I	CCWWGG	1 cut(s)	841
Bst2BI	CACGAG	1 cut(s)	2555
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	7 cut(s)	38, 1417, 1439, 1515, 2212, 2394, 2471
Bst6I	CTCTTC	3 cut(s)	311, 483, 1701
BstACI	GRCGYC	1 cut(s)	389
BstC8I	GCNNGC	4 cut(s)	119, 121, 1256, 1686
BstEII	GGTNACC	1 cut(s)	1620
BstFNI	CGCG	3 cut(s)	119, 121, 1357
BstH2I	RGCGCY	2 cut(s)	170, 392
BstHHI	GCGC	6 cut(s)	119, 121, 123, 169, 391, 1359
BstMAI	GTCTC	6 cut(s)	2, 131, 428, 974, 1428, 2333
BstMWI	GCNNNNNNNGC	6 cut(s)	208, 211, 246, 1778, 2281, 2612
BstNI	CCWGG	1 cut(s)	806
BstPI	GGTNACC	1 cut(s)	1620
BstSCI	CCNGG	2 cut(s)	733, 804
BstSFI	CTRYAG	2 cut(s)	963, 2227
BstUI	CGCG	3 cut(s)	119, 121, 1357
BstV1I	GCAGC	5 cut(s)	192, 223, 1618, 1675, 2380
BstV2I	GAAGAC	2 cut(s)	587, 2646
BstX2I	RGATCY	4 cut(s)	1138, 2223, 2308, 2857
BstYI	RGATCY	4 cut(s)	1138, 2223, 2308, 2857
Bsu15I	ATCGAT	1 cut(s)	555
Bsu36I	CCTNAGG	1 cut(s)	2625
BsuI	GTATCC	1 cut(s)	1451
BsuRI	GGCC	4 cut(s)	840, 1205, 1289, 2166
BsuTUI	ATCGAT	1 cut(s)	555
BtgZI	GCGATG	1 cut(s)	1220
BtsIMutI	CAGTG	2 cut(s)	1511, 1948
Cac8I	GCNNGC	4 cut(s)	119, 121, 1256, 1686
CfoI	GCGC	6 cut(s)	119, 121, 123, 169, 391, 1359
Cfr13I	GGNCC	4 cut(s)	838, 999, 1203, 1287
ClaI	ATCGAT	1 cut(s)	555
CseI	GACGC	1 cut(s)	1448
Csp6I	GTAC	8 cut(s)	1037, 1194, 1948, 1971, 2127, 2293, 2395, 2611
CspCI	CAANNNNNGTGG	2 cut(s)	1656, 1691
CviAII	CATG	3 cut(s)	485, 1811, 2384
CviQI	GTAC	8 cut(s)	1037, 1194, 1948, 1971, 2127, 2293, 2395, 2611
DinI	GGCGCC	1 cut(s)	390
DraI	TTTAAA	2 cut(s)	1093, 2260
EaeI	YGGCCR	1 cut(s)	2164
Eam1104I	CTCTTC	3 cut(s)	311, 483, 1701
EarI	CTCTTC	3 cut(s)	311, 483, 1701
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	841
Eco24I	GRGCYC	3 cut(s)	290, 796, 2032
Eco31I	GGTCTC	3 cut(s)	428, 974, 1428
Eco47I	GGWCC	1 cut(s)	999
Eco53kI	GAGCTC	1 cut(s)	288
Eco57I	CTGAAG	4 cut(s)	1025, 1371, 1487, 1713
Eco81I	CCTNAGG	1 cut(s)	2625
Eco88I	CYCGRG	3 cut(s)	289, 1868, 2122
Eco91I	GGTNACC	1 cut(s)	1620
EcoICRI	GAGCTC	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	999
EcoO65I	GGTNACC	1 cut(s)	1620
EcoRI	GAATTC	1 cut(s)	2429
EcoRII	CCWGG	1 cut(s)	804
EcoT14I	CCWWGG	1 cut(s)	841
EcoT38I	GRGCYC	3 cut(s)	290, 796, 2032
EgeI	GGCGCC	1 cut(s)	390
EheI	GGCGCC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	841
Esp3I	CGTCTC	2 cut(s)	2, 131
FaeI	CATG	3 cut(s)	488, 1814, 2387
FalI	AAGNNNNNCTT	2 cut(s)	2554, 2586
FaqI	GGGAC	2 cut(s)	1012, 2781
FatI	CATG	3 cut(s)	484, 1810, 2383
FauI	CCCGC	1 cut(s)	597
FbaI	TGATCA	2 cut(s)	1660, 2386
FblI	GTMKAC	1 cut(s)	2473
Fnu4HI	GCNGC	9 cut(s)	20, 203, 206, 209, 212, 387, 1632, 1689, 2369
FriOI	GRGCYC	3 cut(s)	290, 796, 2032
Fsp4HI	GCNGC	9 cut(s)	20, 203, 206, 209, 212, 387, 1632, 1689, 2369
FspBI	CTAG	3 cut(s)	1703, 1757, 1902
GlaI	GCGC	6 cut(s)	118, 120, 122, 168, 390, 1358
GluI	GCNGC	9 cut(s)	20, 203, 206, 209, 212, 387, 1632, 1689, 2369
HaeII	RGCGCY	2 cut(s)	170, 392
HaeIII	GGCC	4 cut(s)	840, 1205, 1289, 2166
HapII	CCGG	3 cut(s)	327, 362, 734
HgaI	GACGC	1 cut(s)	1448
HhaI	GCGC	6 cut(s)	119, 121, 123, 169, 391, 1359
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	3 cut(s)	488, 1814, 2387
Hin6I	GCGC	6 cut(s)	117, 119, 121, 167, 389, 1357
HinP1I	GCGC	6 cut(s)	117, 119, 121, 167, 389, 1357
HincII	GTYRAC	2 cut(s)	1087, 2303
HindII	GTYRAC	2 cut(s)	1087, 2303
HpaII	CCGG	3 cut(s)	327, 362, 734
HphI	GGTGA	8 cut(s)	106, 254, 554, 919, 1334, 1614, 2456, 2652
Hpy166II	GTNNAC	7 cut(s)	1087, 1196, 1232, 2303, 2318, 2397, 2474
Hpy188III	TCNNGA	8 cut(s)	313, 362, 1043, 1121, 1868, 1925, 2044, 2315
Hpy8I	GTNNAC	7 cut(s)	1087, 1196, 1232, 2303, 2318, 2397, 2474
Hpy99I	CGWCG	4 cut(s)	161, 397, 1464, 2817
HpyAV	CCTTC	9 cut(s)	85, 107, 334, 341, 448, 676, 805, 2012, 2272
HpyCH4III	ACNGT	7 cut(s)	38, 1417, 1439, 1515, 2212, 2394, 2471
HpyCH4IV	ACGT	2 cut(s)	1402, 2590
HpyF10VI	GCNNNNNNNGC	6 cut(s)	208, 211, 246, 1778, 2281, 2612
HpySE526I	ACGT	2 cut(s)	1402, 2590
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	3 cut(s)	488, 1814, 2387
HspAI	GCGC	6 cut(s)	117, 119, 121, 167, 389, 1357
KasI	GGCGCC	1 cut(s)	388
Kpn2I	TCCGGA	1 cut(s)	361
KpnI	GGTACC	1 cut(s)	1974
Ksp22I	TGATCA	2 cut(s)	1660, 2386
LmnI	GCTCC	5 cut(s)	925, 1426, 2035, 2281, 2380
Lsp1109I	GCAGC	5 cut(s)	192, 223, 1618, 1675, 2380
LweI	GCATC	4 cut(s)	373, 497, 1899, 2503
MaeI	CTAG	3 cut(s)	1703, 1757, 1902
MaeII	ACGT	2 cut(s)	1402, 2590
MaeIII	GTNAC	9 cut(s)	38, 94, 242, 729, 1109, 1620, 2462, 2718, 2848
MflI	RGATCY	4 cut(s)	1138, 2223, 2308, 2857
MhlI	GDGCHC	3 cut(s)	290, 796, 2032
MlsI	TGGCCA	1 cut(s)	2166
MluCI	AATT	9 cut(s)	500, 953, 1297, 1346, 1793, 2160, 2429, 2538, 2795
MluNI	TGGCCA	1 cut(s)	2166
Mly113I	GGCGCC	1 cut(s)	389
MlyI	GAGTC	3 cut(s)	206, 1092, 1361
MmeI	TCCRAC	4 cut(s)	435, 1468, 1692, 1981
Mox20I	TGGCCA	1 cut(s)	2166
MroI	TCCGGA	1 cut(s)	361
MscI	TGGCCA	1 cut(s)	2166
MslI	CAYNNNNRTG	1 cut(s)	768
Msp20I	TGGCCA	1 cut(s)	2166
MspA1I	CMGCKG	2 cut(s)	205, 962
MspI	CCGG	3 cut(s)	327, 362, 734
MspR9I	CCNGG	2 cut(s)	735, 806
Mva1269I	GAATGC	2 cut(s)	1053, 2806
MvaI	CCWGG	1 cut(s)	806
MvnI	CGCG	3 cut(s)	119, 121, 1357
MwoI	GCNNNNNNNGC	6 cut(s)	208, 211, 246, 1778, 2281, 2612
NarI	GGCGCC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	735
NlaIII	CATG	3 cut(s)	488, 1814, 2387
NlaIV	GGNNCC	8 cut(s)	325, 390, 921, 1000, 1411, 1972, 2031, 2120
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	7 cut(s)	38, 94, 242, 1109, 1620, 2462, 2718
OliI	CACNNNNGTG	1 cut(s)	768
PaeR7I	CTCGAG	1 cut(s)	289
PauI	GCGCGC	2 cut(s)	117, 119
PcsI	WCGNNNNNNNCGW	1 cut(s)	2155
PctI	GAATGC	2 cut(s)	1053, 2806
PfeI	GAWTC	7 cut(s)	422, 819, 1186, 1715, 1864, 2287, 2408
PflMI	CCANNNNNTGG	1 cut(s)	2143
PkrI	GCNGC	9 cut(s)	21, 204, 207, 210, 213, 388, 1633, 1690, 2370
PleI	GAGTC	3 cut(s)	205, 1091, 1360
PluTI	GGCGCC	1 cut(s)	392
PpsI	GAGTC	3 cut(s)	205, 1091, 1360
PpuMI	RGGWCCY	1 cut(s)	999
PshBI	ATTAAT	1 cut(s)	2195
PsiI	TTATAA	2 cut(s)	378, 726
Psp124BI	GAGCTC	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	999
Psp6I	CCWGG	1 cut(s)	804
PspEI	GGTNACC	1 cut(s)	1620
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	8 cut(s)	325, 390, 921, 1000, 1411, 1972, 2031, 2120
PspPI	GGNCC	4 cut(s)	838, 999, 1203, 1287
PspPPI	RGGWCCY	1 cut(s)	999
PspXI	VCTCGAGB	1 cut(s)	289
PsuI	RGATCY	4 cut(s)	1138, 2223, 2308, 2857
PteI	GCGCGC	2 cut(s)	117, 119
PvuII	CAGCTG	1 cut(s)	962
RsaI	GTAC	8 cut(s)	1038, 1195, 1949, 1972, 2128, 2294, 2396, 2612
RsaNI	GTAC	8 cut(s)	1037, 1194, 1948, 1971, 2127, 2293, 2395, 2611
RseI	CAYNNNNRTG	1 cut(s)	768
SacI	GAGCTC	1 cut(s)	290
SatI	GCNGC	9 cut(s)	20, 203, 206, 209, 212, 387, 1632, 1689, 2369
Sau96I	GGNCC	4 cut(s)	838, 999, 1203, 1287
ScaI	AGTACT	1 cut(s)	2128
SchI	GAGTC	3 cut(s)	206, 1092, 1361
ScrFI	CCNGG	2 cut(s)	735, 806
SduI	GDGCHC	3 cut(s)	290, 796, 2032
SfaNI	GCATC	4 cut(s)	373, 497, 1899, 2503
SfcI	CTRYAG	2 cut(s)	963, 2227
SfoI	GGCGCC	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	999
SlaI	CTCGAG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	768
SmlI	CTYRAG	5 cut(s)	289, 296, 1274, 2052, 2442
SmoI	CTYRAG	5 cut(s)	289, 296, 1274, 2052, 2442
Sse9I	AATT	9 cut(s)	500, 953, 1297, 1346, 1793, 2160, 2429, 2538, 2795
SspDI	GGCGCC	1 cut(s)	388
SspI	AATATT	2 cut(s)	1918, 2637
SspMI	CTAG	3 cut(s)	1703, 1757, 1902
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	733, 804
StyI	CCWWGG	1 cut(s)	841
TaaI	ACNGT	7 cut(s)	38, 1417, 1439, 1515, 2212, 2394, 2471
TaiI	ACGT	2 cut(s)	1405, 2593
TasI	AATT	9 cut(s)	500, 953, 1297, 1346, 1793, 2160, 2429, 2538, 2795
TatI	WGTACW	4 cut(s)	1036, 1193, 2126, 2394
TauI	GCSGC	4 cut(s)	22, 205, 211, 389
TfiI	GAWTC	7 cut(s)	422, 819, 1186, 1715, 1864, 2287, 2408
TscAI	CASTG	2 cut(s)	1518, 1948
TseFI	GTSAC	7 cut(s)	38, 94, 242, 1109, 1620, 2462, 2718
TseI	GCWGC	5 cut(s)	205, 211, 1631, 1688, 2368
Tsp45I	GTSAC	7 cut(s)	38, 94, 242, 1109, 1620, 2462, 2718
TspDTI	ATGAA	6 cut(s)	177, 501, 684, 875, 1590, 1828
TspRI	CASTG	2 cut(s)	1518, 1948
Van91I	CCANNNNNTGG	1 cut(s)	2143
VpaK11BI	GGWCC	1 cut(s)	999
VspI	ATTAAT	1 cut(s)	2195
XapI	RAATTY	4 cut(s)	500, 1346, 1793, 2429
XcmI	CCANNNNNNNNNTGG	3 cut(s)	812, 1964, 2021
XhoI	CTCGAG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	2473
XspI	CTAG	3 cut(s)	1703, 1757, 1902
ZrmI	AGTACT	1 cut(s)	2128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.