Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013150.1

Orthogroup ID

OG0003840

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 6795

Gene Structure 6795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013150.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

ggtcatctcataaagaatcccagtacacaaagagccaaaagtttgctagatataccctgttcacatcgcattatagtaagtggcacgccattgcaaaacaatctgaaggagttgtgggccttatttaacttctgttgccctgagctactgggtgataagaactggttcaaggaaagattcgagtcacgcatttgtcgtggaaatgagaaaaatgcttcagatagggagaagcgtattggttccacggtagcacaggagctcagagaccgtattcaaccttttttcctgcgtcgcctgaagaatgaggtgtttaaggaggataatgaccaaacaaatgccacactttctaaaaagaatgagatcattgtttggctaagattaaccagctgtcagcggaaactttatgaagcatatttaaagagtgagctggttctttctgcttttgatgggtcaccattggctgcacttacgattctgaagaaaatatgtgatcatccacttctattgacaaagcgagctgctgaagatgtactagaagagttggattcattgcttaagccagatgatgcttgtatggcagaaaaactagcaatgcatatagcagatgttgctgagaaagaggagtttgatgagaaccatgcaaatctctcttgcaaaatatcttttataatgtcattgttggataacttgattcctgaggggcataatgttctcatcttttcccaaactagaaagatgcttaatcttattcaggaaacactgatatccagcggttacaagttccaacgcattgatggtaccacaaaagctactgaaagaattaggattgttaatgatttccaagaaggtattggggctcccatatttctcctgacttctcaagttggtggtttgggtcttacacttacaagagctgatcgtgtgatagtggttgatcctgcttggaacccgagtactgatagccagagtgtggatcgtgcatatcgaattgggcagaataaggatgtcattgtatatagattaatgacttgtgcgactgttgaagaaaagatatatagaaaacagatttacaaaggggggttgtttagaactgcaactgagcaaaaagagcagattcggtactttagtcaacaggatcttcgtgaacttttcagtctcccacaacaaggttttgatgtttcccttactcagaagcagctaaatgaggagcatgatcaacagcacacaatggaagagtctttacaagcccatatagaattcttggaaactcaagggatagctggtgtcagtaaccacagtttactcttctccaagacagcaccacctctgccagaggtagacgcggagcaggaggaagttgaaaggattagacgaactttacttgtgagaagctcaacttcaagttcgacacccgaatgtaatgtcaatggggctgaatatgctttcaagcctaaggatgtaatattaaataagaagatgccttcttcaccagctgatgcaggaaaaatgacaaaatcagagattaaagaaaacatcactaggctgtcacaaactcttgcaaataaggctttagtttcaagattacctgataagggacagaaaatacagaggcaaatttctgaattgaatgctgagcttcgtagactagacaaggacgtaattgacttggatgatgtgactgaggagcttaaaggagtggtgatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

568

Amino Acids

64.51

Weight (kDa)

6.3

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63950 AT5G63950
fragaria_vesca	FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690
malus_domestica	MD15G1135400.v1.1 MD15G1135700.v1.1
prunus_persica	Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1
pyrus_communis	pycom01g00590 pycom15g12200 pycom15g12220
rosa_chinensis	RchiOBHm_Chr2g0122191
rosa_laevigata	RLG00000018669
rosa_multiflora	Rmu_co7987670.1_g000001 Rmu_co8056046.1_g000001 Rmu_sc0000805.1_g000001 Rmu_sc0003133.1_g000012 Rmu_sc0004574.1_g000007 Rmu_sc0013150.1_g000001 Rmu_sc0025362.1_g000002
rosa_roxburghii	Rroxscaffold_2G00121780
rosa_rugosa	Rorug02G0237100
rosa_samantha	Rh2AG295600 Rh2BG304600 Rh2CG282900 Rh2DG319500
rosa_wichuraiana	Rw2G023540 Rw2G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	668
Acc65I	GGTACC	1 cut(s)	797
AccB1I	GGYRCC	1 cut(s)	797
AccB7I	CCANNNNNTGG	1 cut(s)	970
AccI	GTMKAC	2 cut(s)	1338, 1642
AccII	CGCG	1 cut(s)	1343
AciI	CCGC	3 cut(s)	394, 771, 1343
AclWI	GGATC	3 cut(s)	929, 981, 1143
AcsI	RAATTY	2 cut(s)	1256, 1614
AcuI	CTGAAG	5 cut(s)	125, 201, 317, 497, 543
AfaI	GTAC	5 cut(s)	25, 531, 799, 955, 1121
AfiI	CCNNNNNNNGG	3 cut(s)	970, 1166, 1592
AflII	CTTAAG	1 cut(s)	554
AgsI	TTSAA	8 cut(s)	169, 275, 1043, 1361, 1401, 1447, 1578, 1627
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	258, 1160
AlwI	GGATC	3 cut(s)	929, 981, 1143
Ama87I	CYCGRG	1 cut(s)	949
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	3 cut(s)	461, 518, 1195
ApoI	RAATTY	2 cut(s)	1256, 1614
ArsI	GACNNNNNNTTYG	2 cut(s)	1407, 1439
AseI	ATTAAT	1 cut(s)	1022
Asp700I	GAANNNNTTC	1 cut(s)	164
Asp718I	GGTACC	1 cut(s)	797
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	3 cut(s)	164, 444, 1479
AvaI	CYCGRG	1 cut(s)	949
AxyI	CCTNAGG	2 cut(s)	696, 1452
BaeI	ACNNNNGTAYC	2 cut(s)	1111, 1144
BanI	GGYRCC	1 cut(s)	797
BanII	GRGCYC	2 cut(s)	261, 859
BarI	GAAGNNNNNNTAC	2 cut(s)	1224, 1256
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	448, 505, 1207
BccI	CCATC	2 cut(s)	440, 788
BclI	TGATCA	2 cut(s)	490, 1213
BcoDI	GTCTC	2 cut(s)	258, 1160
BfaI	CTAG	6 cut(s)	47, 533, 587, 729, 1539, 1646
BfrI	CTTAAG	1 cut(s)	554
BisI	GCNGC	3 cut(s)	462, 519, 1196
BlpI	GCTNAGC	1 cut(s)	1632
BlsI	GCNGC	3 cut(s)	463, 520, 1197
BmcAI	AGTACT	1 cut(s)	955
BmeT110I	CYCGRG	1 cut(s)	949
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	4 cut(s)	241, 799, 858, 947
BmrI	ACTGGG	2 cut(s)	15, 158
BmsI	GCATC	4 cut(s)	556, 726, 1467, 1486
BmuI	ACTGGG	2 cut(s)	15, 158
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	1632
BpuEI	CTTGAG	2 cut(s)	864, 1254
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	3 cut(s)	970, 1166, 1592
Bse1I	ACTGG	3 cut(s)	21, 153, 167
Bse21I	CCTNAGG	2 cut(s)	696, 1452
Bse3DI	GCAATG	3 cut(s)	89, 548, 597
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	4 cut(s)	493, 1009, 1462, 1675
BseLI	CCNNNNNNNGG	3 cut(s)	970, 1166, 1592
BseMI	GCAATG	3 cut(s)	89, 548, 597
BseMII	CTCAG	8 cut(s)	132, 274, 603, 687, 1089, 1202, 1623, 1671
BseNI	ACTGG	3 cut(s)	21, 153, 167
BseRI	GAGGAG	3 cut(s)	635, 1220, 1697
BseXI	GCAGC	3 cut(s)	448, 505, 1207
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	1343
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	797
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	949
BslFI	GGGAC	1 cut(s)	1608
BslI	CCNNNNNNNGG	3 cut(s)	970, 1166, 1592
BsmAI	GTCTC	2 cut(s)	258, 1160
BsmFI	GGGAC	1 cut(s)	1608
BsmI	GAATGC	1 cut(s)	1633
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	949
Bsp1286I	GDGCHC	2 cut(s)	261, 859
Bsp143I	GATC	7 cut(s)	360, 490, 916, 934, 973, 1135, 1213
Bsp1720I	GCTNAGC	1 cut(s)	1632
BspACI	CCGC	3 cut(s)	394, 771, 1343
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	8 cut(s)	133, 273, 604, 688, 1090, 1201, 1624, 1672
BspFNI	CGCG	1 cut(s)	1343
BspLI	GGNNCC	4 cut(s)	241, 799, 858, 947
BspPI	GGATC	3 cut(s)	929, 981, 1143
BspT107I	GGYRCC	1 cut(s)	797
BspTI	CTTAAG	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	3 cut(s)	89, 548, 597
BsrI	ACTGG	3 cut(s)	21, 153, 167
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	7 cut(s)	360, 490, 916, 934, 973, 1135, 1213
Bst4CI	ACNGT	4 cut(s)	247, 269, 1039, 1298
Bst6I	CTCTTC	3 cut(s)	531, 1227, 1310
BstAFI	CTTAAG	1 cut(s)	554
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	86, 516
BstDSI	CCRYGG	1 cut(s)	243
BstEII	GGTNACC	1 cut(s)	450
BstF5I	GGATG	4 cut(s)	493, 1009, 1462, 1675
BstFNI	CGCG	1 cut(s)	1343
BstKTI	GATC	7 cut(s)	363, 493, 919, 937, 976, 1138, 1216
BstMAI	GTCTC	2 cut(s)	258, 1160
BstMBI	GATC	7 cut(s)	360, 490, 916, 934, 973, 1135, 1213
BstMWI	GCNNNNNNNGC	5 cut(s)	575, 608, 1108, 1439, 1565
BstPI	GGTNACC	1 cut(s)	450
BstUI	CGCG	1 cut(s)	1343
BstV1I	GCAGC	3 cut(s)	448, 505, 1207
BstX2I	RGATCY	1 cut(s)	1135
BstYI	RGATCY	1 cut(s)	1135
Bsu36I	CCTNAGG	2 cut(s)	696, 1452
BsuRI	GGCC	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	243
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	4 cut(s)	493, 1009, 1462, 1675
BtsIMutI	CAGTG	1 cut(s)	758
Cac8I	GCNNGC	2 cut(s)	86, 516
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	2 cut(s)	278, 1349
Csp6I	GTAC	5 cut(s)	24, 530, 798, 954, 1120
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	2 cut(s)	638, 1211
CviQI	GTAC	5 cut(s)	24, 530, 798, 954, 1120
DpnI	GATC	7 cut(s)	362, 492, 918, 936, 975, 1137, 1215
DpnII	GATC	7 cut(s)	360, 490, 916, 934, 973, 1135, 1213
DraI	TTTAAA	1 cut(s)	417
Eam1104I	CTCTTC	3 cut(s)	531, 1227, 1310
EarI	CTCTTC	3 cut(s)	531, 1227, 1310
Ecl136II	GAGCTC	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	261, 859
Eco31I	GGTCTC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	765
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	5 cut(s)	125, 201, 317, 497, 543
Eco81I	CCTNAGG	2 cut(s)	696, 1452
Eco88I	CYCGRG	1 cut(s)	949
Eco91I	GGTNACC	1 cut(s)	450
EcoICRI	GAGCTC	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	450
EcoRI	GAATTC	1 cut(s)	1256
EcoRV	GATATC	1 cut(s)	765
EcoT22I	ATGCAT	1 cut(s)	597
EcoT38I	GRGCYC	2 cut(s)	261, 859
FaeI	CATG	2 cut(s)	641, 1214
FalI	AAGNNNNNCTT	2 cut(s)	1381, 1413
FaqI	GGGAC	1 cut(s)	1608
FatI	CATG	2 cut(s)	637, 1210
FbaI	TGATCA	2 cut(s)	490, 1213
FblI	GTMKAC	2 cut(s)	1338, 1642
Fnu4HI	GCNGC	3 cut(s)	462, 519, 1196
FokI	GGATG	4 cut(s)	480, 1016, 1469, 1682
FriOI	GRGCYC	2 cut(s)	261, 859
Fsp4HI	GCNGC	3 cut(s)	462, 519, 1196
FspBI	CTAG	6 cut(s)	47, 533, 587, 729, 1539, 1646
GluI	GCNGC	3 cut(s)	462, 519, 1196
HaeIII	GGCC	1 cut(s)	119
HgaI	GACGC	2 cut(s)	278, 1349
Hin1II	CATG	2 cut(s)	641, 1214
HincII	GTYRAC	1 cut(s)	1130
HindII	GTYRAC	1 cut(s)	1130
HinfI	GANTC	8 cut(s)	16, 177, 182, 472, 545, 691, 1114, 1235
HphI	GGTGA	3 cut(s)	164, 444, 1479
Hpy166II	GTNNAC	7 cut(s)	26, 62, 1130, 1145, 1301, 1339, 1643
Hpy188I	TCNGA	7 cut(s)	105, 220, 263, 477, 1191, 1519, 1621
Hpy188III	TCNNGA	5 cut(s)	695, 752, 871, 1142, 1578
Hpy8I	GTNNAC	7 cut(s)	26, 62, 1130, 1145, 1301, 1339, 1643
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	3 cut(s)	100, 839, 1491
HpyCH4III	ACNGT	4 cut(s)	247, 269, 1039, 1298
HpyCH4IV	ACGT	1 cut(s)	1656
HpyCH4V	TGCA	9 cut(s)	94, 464, 595, 641, 654, 980, 1094, 1499, 1559
HpyF10VI	GCNNNNNNNGC	5 cut(s)	575, 608, 1108, 1439, 1565
HpySE526I	ACGT	1 cut(s)	1656
Hsp92II	CATG	2 cut(s)	641, 1214
KpnI	GGTACC	1 cut(s)	801
Ksp22I	TGATCA	2 cut(s)	490, 1213
Kzo9I	GATC	7 cut(s)	360, 490, 916, 934, 973, 1135, 1213
LmnI	GCTCC	5 cut(s)	256, 862, 1207, 1345, 1684
Lsp1109I	GCAGC	3 cut(s)	448, 505, 1207
LweI	GCATC	4 cut(s)	556, 726, 1467, 1486
MaeI	CTAG	6 cut(s)	47, 533, 587, 729, 1539, 1646
MaeII	ACGT	1 cut(s)	1656
MaeIII	GTNAC	6 cut(s)	183, 450, 773, 1289, 1545, 1675
MalI	GATC	7 cut(s)	362, 492, 918, 936, 975, 1137, 1215
MboI	GATC	7 cut(s)	360, 490, 916, 934, 973, 1135, 1213
MflI	RGATCY	1 cut(s)	1135
MhlI	GDGCHC	2 cut(s)	261, 859
MluCI	AATT	6 cut(s)	819, 987, 1256, 1614, 1622, 1659
MlyI	GAGTC	2 cut(s)	191, 1244
MmeI	TCCRAC	3 cut(s)	522, 660, 808
Mph1103I	ATGCAT	1 cut(s)	597
MroXI	GAANNNNTTC	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	1414
MspA1I	CMGCKG	4 cut(s)	387, 394, 771, 1493
MspCI	CTTAAG	1 cut(s)	554
Mva1269I	GAATGC	1 cut(s)	1633
MvnI	CGCG	1 cut(s)	1343
MwoI	GCNNNNNNNGC	5 cut(s)	575, 608, 1108, 1439, 1565
NdeII	GATC	7 cut(s)	360, 490, 916, 934, 973, 1135, 1213
NlaIII	CATG	2 cut(s)	641, 1214
NlaIV	GGNNCC	4 cut(s)	241, 799, 858, 947
NmuCI	GTSAC	4 cut(s)	183, 450, 1545, 1675
NsiI	ATGCAT	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	2 cut(s)	193, 982
PctI	GAATGC	1 cut(s)	1633
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	6 cut(s)	16, 177, 472, 545, 691, 1114
PflMI	CCANNNNNTGG	1 cut(s)	970
PkrI	GCNGC	3 cut(s)	463, 520, 1197
PleI	GAGTC	2 cut(s)	190, 1243
PpsI	GAGTC	2 cut(s)	190, 1243
PshBI	ATTAAT	1 cut(s)	1022
PsiI	TTATAA	1 cut(s)	668
Psp124BI	GAGCTC	1 cut(s)	261
PspEI	GGTNACC	1 cut(s)	450
PspN4I	GGNNCC	4 cut(s)	241, 799, 858, 947
PspPI	GGNCC	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	1135
PvuII	CAGCTG	2 cut(s)	387, 1493
RsaI	GTAC	5 cut(s)	25, 531, 799, 955, 1121
RsaNI	GTAC	5 cut(s)	24, 530, 798, 954, 1120
RseI	CAYNNNNRTG	1 cut(s)	1414
SacI	GAGCTC	1 cut(s)	261
SatI	GCNGC	3 cut(s)	462, 519, 1196
Sau3AI	GATC	7 cut(s)	360, 490, 916, 934, 973, 1135, 1213
Sau96I	GGNCC	1 cut(s)	117
ScaI	AGTACT	1 cut(s)	955
SchI	GAGTC	2 cut(s)	191, 1244
SduI	GDGCHC	2 cut(s)	261, 859
SfaNI	GCATC	4 cut(s)	556, 726, 1467, 1486
SmiMI	CAYNNNNRTG	1 cut(s)	1414
SmlI	CTYRAG	3 cut(s)	554, 879, 1269
SmoI	CTYRAG	3 cut(s)	554, 879, 1269
Sse9I	AATT	6 cut(s)	819, 987, 1256, 1614, 1622, 1659
SsiI	CCGC	3 cut(s)	394, 771, 1343
SspI	AATATT	1 cut(s)	1464
SspMI	CTAG	6 cut(s)	47, 533, 587, 729, 1539, 1646
SstI	GAGCTC	1 cut(s)	261
TaaI	ACNGT	4 cut(s)	247, 269, 1039, 1298
TaiI	ACGT	1 cut(s)	1659
TaqI	TCGA	3 cut(s)	180, 985, 1406
TasI	AATT	6 cut(s)	819, 987, 1256, 1614, 1622, 1659
TatI	WGTACW	3 cut(s)	23, 529, 953
TfiI	GAWTC	6 cut(s)	16, 177, 472, 545, 691, 1114
TscAI	CASTG	1 cut(s)	765
TseFI	GTSAC	4 cut(s)	183, 450, 1545, 1675
TseI	GCWGC	3 cut(s)	461, 518, 1195
Tsp45I	GTSAC	4 cut(s)	183, 450, 1545, 1675
TspDTI	ATGAA	2 cut(s)	420, 537
TspRI	CASTG	1 cut(s)	765
Van91I	CCANNNNNTGG	1 cut(s)	970
Vha464I	CTTAAG	1 cut(s)	554
VspI	ATTAAT	1 cut(s)	1022
XapI	RAATTY	2 cut(s)	1256, 1614
XcmI	CCANNNNNNNNNTGG	2 cut(s)	791, 848
XmiI	GTMKAC	2 cut(s)	1338, 1642
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	6 cut(s)	47, 533, 587, 729, 1539, 1646
ZrmI	AGTACT	1 cut(s)	955
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.