Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003840

Physical Location & Seq

Genomic Coordinates Reverse (-)

9875604 .. 9885309

Gene Structure 9706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1135700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3042 bp

ATGGCGGAGGAGAGGAAAGGCGGCAAAAAACCAGAGAGTCTAAACGACAGCCACTATCGCCTCCTTCAAGACCTCCTCTCTCCTCCTCCTGCTGCTGCTGCCAATCCTTCTTCCACACCCGCCGAGGGCGATAAAGTGGAAATGGAGGAGGTGAAGCCACCGATCGAAGGCCAAAGGGTTCACAACCTTCCTCATTTCTCACTCGCTGATTTTGATTCATCTCCTGAAGAAGAAAAACCTTCAAAGGTTAAGATTGAAGGTAGACGCCGTCTTTGTAAAGTTTCTTATCGGGCTGACAGTGATCATGCTGACAAACAACCAGTGCTTGATGAGCCCAACGTTTCGGGCATTGCTGATTATGAATCACCGGAAGTTCTGAAAAAAAATCCGAGTAAGACTAGTGCCAATGGTGGCGGGAATGAGATTAGGGATATTCTTGATGACTTGAGCTCGAGGCTTGAGTTACTGTCAATTGAGAGGAGGGGTGCCAGAAAAGCGGACATGGTTGAAGGTTCTAATGTGTCTAAAACCAAAGGCAAGGAGACAGATGCTTATTTGCCGAGGGAACCTCAACGAGCCAGCCTGGCTATGAAACATGATGGTCAAAAGAAAAGAGAAACTTTATGGGTGGATGAAAAACCAAAAACTGTGGCCTGTCCTCTTGTTCCTAAAGTCGGAAAAAGAGAGGTTGGTGTTGAGGATGGCTGTGTATTTTTGAGTGACAATAAGATAGTTAAAGAATCAGGGAGGCAGAGTGGTATTGTTAAAGAGTTCTATGAATCTGATGAGCTTATTGTTATCGATGATTCTACTGATGATTGTGCTCTGGTGACTGATGGTTCTATTACTTTGAATGGTCTCACATCTACTTACAAGTTGCCTGGGAAGATTGCGACAATGTTGTTTCCACATCAACGTGATGGCCTAAAGTGGCTATGGTCTTTGCATTGTCAGGGGAAGGGTGGAATCTTGGGTGATGACATGGGCTTGGGCAAAACGATGCAGATTTGTAGCTTCGTAGCAGGATTATTTCATTCACGGTTGATTAAAAGAGTTATGGTTGTGGCCCCTAAAACACTGCTTTCCCATTGGATTAAAGAATTATCATCTGTGGGTCTTGCTGATAAGATAAGAGAATACTATGGGACTTGCGCTAAAGCTCGAAAATATGAGCTTCAGTATGTACTTCAGGACAAAGGCATTCTTCTCACAACTTATGATATTGTGCGGGTTAACTCAAAATCTTTAAGAGGGGATGACTATGTTCTTGATGATGGAAGAGAAGATATCATATGGGATTATATGATACTTGATGAGGGGCATCTCATAAAGAACCCTAGTACACAAAGAGCCAAAAGTTTGCTTGAGATACCTTGTGGCCATCGCATTATTGTAAGCGGCACGCCATTGCAAAATAATCTGAAGGAGTTGTGGGCCTTATTCAACTTCTGTTGCCCTGAGCTACTGGGAGATAAGAAATGTTTTAAGGAACAGTTTGAGTCTCTCATTCTTCGTGGAAATGAGAAAAATGCTTCGGATAGGGAAAAGCGTATTGGTTCAACGGTTGCAAAGGAACTAAGAGAACGTATTAAACCTTTTTTTCTGCGTCGCTTAAAGAGTGAGGTATTTAATGAAGACAATGACCAAACAAGTGCCAAACTTTCTAAAAAGAACGAGATCATTGTTTGGTTGAGATTGACGGGCTGTCAGCGGAAACTTTATGAAGCTTTTCTAAAGAGTGAGCTGGTTCTTTCTGCTTTTGATGGGTCCCCGTTGGCTGCACTTACGATCCTGAAGAAAATATGTGATCATCCACTACTATTGACAAAGCGAGCTGCTGAAGATGTACTAGAAGAGATGGATTCAATGTTGAAGCCAGATGAAACTTGCATGGCAGAAAAATTGGCAATGTACATAGCCGATGTTGCTGAGAGAGAGGACTTTAACGAAAAGCATCCCAACCTGTCATGCAAAATATCTTTTATATTGTCTTTACTGGAAAACTTAATTCCTCAGGGGCATAATGTTCTTATCTTCTCGCAAACTCGAAAGATGCTTAATCTTATTCAGGAATCACTAGTATCCAATGGTTACGAGTTCTTACGCATTGATGGAACCACAAAAGCTATTGACAGAATGAGGCTTGTTGATGATTTCCAAGAAGGTAATGGAGCTCCCATATTTCTCCTGACATCTCAAGTAGGTGGTTTGGGCCTCACGCTTACAAGAGCAGATCGTGTGATAGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGCGTGGATCGTGCATATCGAATCGGACAAAATAAGGATGTCATTGTATACAGATTAATGACTTGTGGGACTGTTGAAGAAAAGATATACAGAAAACAGATATACAAGGGCGGATTGTTTAAAACTGCAACTGAGCATAAAGAACAGATTCGGTATTTTAGTCAGCAGGATCTTCGTGAACTTTTCAGTCTCCCAAAAGAAGGTTTTGATGTATCCCTTACTCAGCAGCAACTATACGAGGAGCACGATCACCAGCACACAATGGACAAGTACTTCAAGTCCCATATCGAGTTCTTGGAAACTCAAGGTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACCTCTACCTGTCGCTGTAGGAGTAGAAGAGGAAGTTGAAAGAATCAGAGGAGCTTCGACTGCGGGAAGTTCATTTTCAAGTTCTTTACAAGAACGCAATGTGAATGGGGCCGAATATGCTTTCAAGCCAAAGGATATAATCATAAACAAGAAGCCTTCTTCACCGATTGACGCGGATAAATTGACAGAATCAGAGATTAAACAGAGAATCAACAGGCTGTCACAAACTCTTGCAAATAAGGCAATGGTTTCAAGATTACCAGATAAGGGGGAGAAAATAGAAAAGCAAATAGGTGCACTGAAGTCTGAGCTGTATGGACTTGGAACAGTGAAAGCGGAAGGAAACGAGAGAAATGTTATCGACTTAGATGATATAACTGGGGAGTTCCATAGAGTGGTCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1014

Amino Acids

113.87

Weight (kDa)

6.33

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	302 - 469	5.4e-07	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	304 - 605	3e-61	SNF2-related domain
AAA_34	PF13872	320 - 449	6.1e-06	P-loop containing NTP hydrolase pore-1
Helicase_C	PF00271	662 - 770	8.7e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63950 AT5G63950
fragaria_vesca	FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690
malus_domestica	MD15G1135400.v1.1 MD15G1135700.v1.1
prunus_persica	Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1
pyrus_communis	pycom01g00590 pycom15g12200 pycom15g12220
rosa_chinensis	RchiOBHm_Chr2g0122191
rosa_laevigata	RLG00000018669
rosa_multiflora	Rmu_co7987670.1_g000001 Rmu_co8056046.1_g000001 Rmu_sc0000805.1_g000001 Rmu_sc0003133.1_g000012 Rmu_sc0004574.1_g000007 Rmu_sc0013150.1_g000001 Rmu_sc0025362.1_g000002
rosa_roxburghii	Rroxscaffold_2G00121780
rosa_rugosa	Rorug02G0237100
rosa_samantha	Rh2AG295600 Rh2BG304600 Rh2CG282900 Rh2DG319500
rosa_wichuraiana	Rw2G023540 Rw2G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	485
AccB7I	CCANNNNNTGG	1 cut(s)	3031
AccI	GTMKAC	2 cut(s)	262, 2331
AccII	CGCG	1 cut(s)	2810
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	4 cut(s)	1783, 2246, 2298, 2460
AcoI	YGGCCR	1 cut(s)	1378
AcuI	CTGAAG	7 cut(s)	246, 1160, 1172, 1442, 1814, 1860, 2957
AcyI	GRCGYC	1 cut(s)	265
AfaI	GTAC	6 cut(s)	1185, 1342, 1848, 1913, 2272, 2555
AfiI	CCNNNNNNNGG	7 cut(s)	125, 167, 674, 2272, 2483, 2903, 3031
AhdI	GACNNNNNGTC	1 cut(s)	1704
AhlI	ACTAGT	2 cut(s)	398, 2077
AjnI	CCWGG	2 cut(s)	582, 880
AjuI	GAANNNNNNNTTGG	2 cut(s)	1536, 1568
Alw21I	GWGCWC	5 cut(s)	452, 826, 2176, 2529, 2935
Alw26I	GTCTC	4 cut(s)	536, 863, 1506, 2477
Alw44I	GTGCAC	1 cut(s)	2931
AlwI	GGATC	4 cut(s)	1783, 2246, 2298, 2460
Ama87I	CYCGRG	1 cut(s)	451
AoxI	GGCC	8 cut(s)	169, 651, 922, 1065, 1378, 1434, 2212, 2745
ApaLI	GTGCAC	1 cut(s)	2931
ApeKI	GCWGC	6 cut(s)	92, 95, 98, 1778, 1835, 2509
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AseI	ATTAAT	1 cut(s)	2339
Asp700I	GAANNNNTTC	2 cut(s)	1728, 2430
AspLEI	GCGC	1 cut(s)	1154
AspS9I	GGNCC	5 cut(s)	1066, 1434, 1767, 2212, 2745
AsuHPI	GGTGA	6 cut(s)	163, 357, 841, 986, 2525, 2790
AvaI	CYCGRG	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	1767
AxyI	CCTNAGG	1 cut(s)	2013
BaeGI	GKGCMC	1 cut(s)	2935
BalI	TGGCCA	1 cut(s)	1380
BanI	GGYRCC	1 cut(s)	485
BanII	GRGCYC	3 cut(s)	336, 452, 2176
BbsI	GAAGAC	1 cut(s)	1641
Bbv12I	GWGCWC	5 cut(s)	452, 826, 2176, 2529, 2935
BbvI	GCAGC	6 cut(s)	79, 82, 85, 1765, 1822, 2521
BccI	CCATC	9 cut(s)	593, 695, 830, 914, 1268, 1389, 1757, 1852, 2105
BceAI	ACGGC	1 cut(s)	252
BcgI	CGANNNNNNTGC	2 cut(s)	2438, 2472
BciT130I	CCWGG	2 cut(s)	584, 882
BciVI	GTATCC	2 cut(s)	2092, 2506
BclI	TGATCA	2 cut(s)	301, 1807
BcoDI	GTCTC	4 cut(s)	536, 863, 1506, 2477
BcuI	ACTAGT	2 cut(s)	398, 2077
BfaI	CTAG	4 cut(s)	399, 1338, 1850, 2078
BfmI	CTRYAG	1 cut(s)	2652
BfuI	GTATCC	2 cut(s)	2092, 2506
BglI	GCCNNNNNGGC	1 cut(s)	584
BisI	GCNGC	8 cut(s)	22, 93, 96, 99, 1399, 1779, 1836, 2510
BlsI	GCNGC	8 cut(s)	23, 94, 97, 100, 1400, 1780, 1837, 2511
BmcAI	AGTACT	1 cut(s)	2555
Bme1390I	CCNGG	2 cut(s)	584, 882
Bme18I	GGWCC	1 cut(s)	1767
BmeRI	GACNNNNNGTC	1 cut(s)	1704
BmeT110I	CYCGRG	1 cut(s)	451
BmgT120I	GGNCC	5 cut(s)	1066, 1434, 1767, 2212, 2745
BmiI	GGNNCC	8 cut(s)	487, 567, 1068, 1768, 1769, 2116, 2264, 2746
BmrFI	CCNGG	2 cut(s)	584, 882
BmrI	ACTGGG	2 cut(s)	1475, 3024
BmsI	GCATC	5 cut(s)	538, 990, 1330, 1963, 2043
BmuI	ACTGGG	2 cut(s)	1475, 3024
BpiI	GAAGAC	1 cut(s)	1641
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
Bpu10I	CCTNAGC	1 cut(s)	1458
BpuEI	CTTGAG	5 cut(s)	466, 479, 1385, 2181, 2571
Bsa29I	ATCGAT	1 cut(s)	801
BsaHI	GRCGYC	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	863
BsaJI	CCNNGG	3 cut(s)	123, 560, 881
BsaWI	WCCGGW	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	739, 769
Bsc4I	CCNNNNNNNGG	7 cut(s)	125, 167, 674, 2272, 2483, 2903, 3031
Bse1I	ACTGG	4 cut(s)	320, 1470, 2001, 3019
Bse21I	CCTNAGG	1 cut(s)	2013
Bse3DI	GCAATG	5 cut(s)	348, 1406, 1914, 2740, 2886
BseBI	CCWGG	2 cut(s)	584, 882
BseCI	ATCGAT	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	123, 560, 881
BseGI	GGATG	6 cut(s)	637, 706, 1261, 1810, 1954, 2326
BseLI	CCNNNNNNNGG	7 cut(s)	125, 167, 674, 2272, 2483, 2903, 3031
BseMI	GCAATG	5 cut(s)	348, 1406, 1914, 2740, 2886
BseMII	CTCAG	6 cut(s)	1449, 1920, 2027, 2406, 2519, 2934
BseNI	ACTGG	4 cut(s)	320, 1470, 2001, 3019
BseRI	GAGGAG	8 cut(s)	23, 65, 72, 75, 161, 493, 2537, 2700
BseSI	GKGCMC	1 cut(s)	2935
BseXI	GCAGC	6 cut(s)	79, 82, 85, 1765, 1822, 2521
BsgI	GTGCAG	1 cut(s)	1764
Bsh1236I	CGCG	1 cut(s)	2810
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	8 cut(s)	171, 653, 924, 1067, 1380, 1436, 2214, 2747
BshNI	GGYRCC	1 cut(s)	485
BshVI	ATCGAT	1 cut(s)	801
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	5 cut(s)	452, 826, 2176, 2529, 2935
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	4 cut(s)	1159, 1753, 2365, 2548
BslI	CCNNNNNNNGG	7 cut(s)	125, 167, 674, 2272, 2483, 2903, 3031
BsmAI	GTCTC	4 cut(s)	536, 863, 1506, 2477
BsmFI	GGGAC	4 cut(s)	1159, 1753, 2365, 2548
BsmI	GAATGC	1 cut(s)	1200
BsnI	GGCC	8 cut(s)	171, 653, 924, 1067, 1380, 1436, 2214, 2747
Bso31I	GGTCTC	1 cut(s)	863
BsoBI	CYCGRG	1 cut(s)	451
Bsp1286I	GDGCHC	6 cut(s)	336, 452, 826, 2176, 2529, 2935
Bsp1407I	TGTACA	1 cut(s)	1911
BspANI	GGCC	8 cut(s)	171, 653, 924, 1067, 1380, 1436, 2214, 2747
BspCNI	CTCAG	6 cut(s)	1450, 1921, 2026, 2407, 2518, 2935
BspDI	ATCGAT	1 cut(s)	801
BspFNI	CGCG	1 cut(s)	2810
BspLI	GGNNCC	8 cut(s)	487, 567, 1068, 1768, 1769, 2116, 2264, 2746
BspPI	GGATC	4 cut(s)	1783, 2246, 2298, 2460
BspT107I	GGYRCC	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	863
BsrDI	GCAATG	5 cut(s)	348, 1406, 1914, 2740, 2886
BsrGI	TGTACA	1 cut(s)	1911
BsrI	ACTGG	4 cut(s)	320, 1470, 2001, 3019
BssECI	CCNNGG	3 cut(s)	123, 560, 881
BssNAI	GTATAC	1 cut(s)	2332
BssNI	GRCGYC	1 cut(s)	265
Bst1107I	GTATAC	1 cut(s)	2332
Bst2UI	CCWGG	2 cut(s)	584, 882
Bst4CI	ACNGT	9 cut(s)	299, 468, 649, 1041, 1494, 1564, 2356, 2615, 2965
Bst6I	CTCTTC	4 cut(s)	1273, 1848, 2627, 2658
BstACI	GRCGYC	1 cut(s)	265
BstAUI	TGTACA	1 cut(s)	1911
BstC8I	GCNNGC	3 cut(s)	580, 1403, 1833
BstDEI	CTNAG	8 cut(s)	1458, 1577, 1929, 2013, 2415, 2505, 2943, 3001
BstF5I	GGATG	6 cut(s)	637, 706, 1261, 1810, 1954, 2326
BstFNI	CGCG	1 cut(s)	2810
BstHHI	GCGC	1 cut(s)	1154
BstMAI	GTCTC	4 cut(s)	536, 863, 1506, 2477
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	9 cut(s)	57, 98, 331, 494, 584, 1925, 2696, 2753, 2876
BstNI	CCWGG	2 cut(s)	584, 882
BstSCI	CCNGG	2 cut(s)	582, 880
BstSFI	CTRYAG	1 cut(s)	2652
BstSLI	GKGCMC	1 cut(s)	2935
BstUI	CGCG	1 cut(s)	2810
BstV1I	GCAGC	6 cut(s)	79, 82, 85, 1765, 1822, 2521
BstV2I	GAAGAC	1 cut(s)	1641
BstX2I	RGATCY	1 cut(s)	2452
BstYI	RGATCY	1 cut(s)	2452
BstZ17I	GTATAC	1 cut(s)	2332
Bsu15I	ATCGAT	1 cut(s)	801
Bsu36I	CCTNAGG	1 cut(s)	2013
BsuI	GTATCC	2 cut(s)	2092, 2506
BsuRI	GGCC	8 cut(s)	171, 653, 924, 1067, 1380, 1436, 2214, 2747
BsuTUI	ATCGAT	1 cut(s)	801
BtgZI	GCGATG	1 cut(s)	1367
BtsCI	GGATG	6 cut(s)	637, 706, 1261, 1810, 1954, 2326
BtsI	GCAGTG	1 cut(s)	1076
BtsIMutI	CAGTG	5 cut(s)	304, 327, 1076, 2933, 2970
Cac8I	GCNNGC	3 cut(s)	580, 1403, 1833
CfoI	GCGC	1 cut(s)	1154
Cfr13I	GGNCC	5 cut(s)	1066, 1434, 1767, 2212, 2745
ClaI	ATCGAT	1 cut(s)	801
CseI	GACGC	3 cut(s)	273, 1595, 2816
Csp6I	GTAC	6 cut(s)	1184, 1341, 1847, 1912, 2271, 2554
CspCI	CAANNNNNGTGG	4 cut(s)	630, 665, 1803, 1838
CviAII	CATG	6 cut(s)	305, 502, 596, 982, 1891, 1968
CviQI	GTAC	6 cut(s)	1184, 1341, 1847, 1912, 2271, 2554
DdeI	CTNAG	8 cut(s)	1458, 1577, 1929, 2013, 2415, 2505, 2943, 3001
DraI	TTTAAA	1 cut(s)	2404
DriI	GACNNNNNGTC	1 cut(s)	1704
EaeI	YGGCCR	1 cut(s)	1378
Eam1104I	CTCTTC	4 cut(s)	1273, 1848, 2627, 2658
Eam1105I	GACNNNNNGTC	1 cut(s)	1704
EarI	CTCTTC	4 cut(s)	1273, 1848, 2627, 2658
EciI	GGCGGA	2 cut(s)	20, 2409
Ecl136II	GAGCTC	2 cut(s)	450, 2174
Eco24I	GRGCYC	3 cut(s)	336, 452, 2176
Eco31I	GGTCTC	1 cut(s)	863
Eco32I	GATATC	1 cut(s)	1288
Eco47I	GGWCC	1 cut(s)	1767
Eco53kI	GAGCTC	2 cut(s)	450, 2174
Eco57I	CTGAAG	7 cut(s)	246, 1160, 1172, 1442, 1814, 1860, 2957
Eco81I	CCTNAGG	1 cut(s)	2013
Eco88I	CYCGRG	1 cut(s)	451
EcoICRI	GAGCTC	2 cut(s)	450, 2174
EcoO109I	RGGNCCY	1 cut(s)	1767
EcoRII	CCWGG	2 cut(s)	582, 880
EcoRV	GATATC	1 cut(s)	1288
EcoT38I	GRGCYC	3 cut(s)	336, 452, 2176
FaeI	CATG	6 cut(s)	308, 505, 599, 985, 1894, 1971
FalI	AAGNNNNNCTT	4 cut(s)	604, 636, 1188, 1220
FaqI	GGGAC	4 cut(s)	1159, 1753, 2365, 2548
FatI	CATG	6 cut(s)	304, 501, 595, 981, 1890, 1967
FauI	CCCGC	4 cut(s)	127, 407, 1221, 2692
FauNDI	CATATG	1 cut(s)	1292
FbaI	TGATCA	2 cut(s)	301, 1807
FblI	GTMKAC	2 cut(s)	262, 2331
Fnu4HI	GCNGC	8 cut(s)	22, 93, 96, 99, 1399, 1779, 1836, 2510
FokI	GGATG	6 cut(s)	644, 713, 1268, 1797, 1941, 2333
FriOI	GRGCYC	3 cut(s)	336, 452, 2176
Fsp4HI	GCNGC	8 cut(s)	22, 93, 96, 99, 1399, 1779, 1836, 2510
FspBI	CTAG	4 cut(s)	399, 1338, 1850, 2078
GlaI	GCGC	1 cut(s)	1153
GluI	GCNGC	8 cut(s)	22, 93, 96, 99, 1399, 1779, 1836, 2510
HaeIII	GGCC	8 cut(s)	171, 653, 924, 1067, 1380, 1436, 2214, 2747
HapII	CCGG	1 cut(s)	368
HgaI	GACGC	3 cut(s)	273, 1595, 2816
HhaI	GCGC	1 cut(s)	1154
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	6 cut(s)	308, 505, 599, 985, 1894, 1971
Hin6I	GCGC	1 cut(s)	1152
HinP1I	GCGC	1 cut(s)	1152
HincII	GTYRAC	1 cut(s)	1234
HindII	GTYRAC	1 cut(s)	1234
HindIII	AAGCTT	1 cut(s)	1725
HpaI	GTTAAC	1 cut(s)	1234
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	6 cut(s)	163, 357, 841, 986, 2525, 2790
Hpy166II	GTNNAC	8 cut(s)	181, 263, 1234, 1343, 2332, 2462, 2618, 2933
Hpy8I	GTNNAC	8 cut(s)	181, 263, 1234, 1343, 2332, 2462, 2618, 2933
Hpy99I	CGWCG	1 cut(s)	1611
HpyCH4III	ACNGT	9 cut(s)	299, 468, 649, 1041, 1494, 1564, 2356, 2615, 2965
HpyCH4IV	ACGT	3 cut(s)	339, 916, 1585
HpyF10VI	GCNNNNNNNGC	9 cut(s)	57, 98, 331, 494, 584, 1925, 2696, 2753, 2876
HpyF3I	CTNAG	8 cut(s)	1458, 1577, 1929, 2013, 2415, 2505, 2943, 3001
HpySE526I	ACGT	3 cut(s)	339, 916, 1585
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	6 cut(s)	308, 505, 599, 985, 1894, 1971
HspAI	GCGC	1 cut(s)	1152
KflI	GGGWCCC	1 cut(s)	1767
Ksp22I	TGATCA	2 cut(s)	301, 1807
KspAI	GTTAAC	1 cut(s)	1234
LmnI	GCTCC	4 cut(s)	2171, 2179, 2524, 2687
Lsp1109I	GCAGC	6 cut(s)	79, 82, 85, 1765, 1822, 2521
LweI	GCATC	5 cut(s)	538, 990, 1330, 1963, 2043
MaeI	CTAG	4 cut(s)	399, 1338, 1850, 2078
MaeII	ACGT	3 cut(s)	339, 916, 1585
MaeIII	GTNAC	5 cut(s)	462, 719, 829, 2090, 2856
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	2452
MhlI	GDGCHC	6 cut(s)	336, 452, 826, 2176, 2529, 2935
MlsI	TGGCCA	1 cut(s)	1380
MluCI	AATT	5 cut(s)	471, 1100, 1901, 2007, 2816
MluNI	TGGCCA	1 cut(s)	1380
MlyI	GAGTC	3 cut(s)	46, 1508, 2610
MmeI	TCCRAC	1 cut(s)	655
Mox20I	TGGCCA	1 cut(s)	1380
MroXI	GAANNNNTTC	2 cut(s)	1728, 2430
MscI	TGGCCA	1 cut(s)	1380
MslI	CAYNNNNRTG	1 cut(s)	915
Msp20I	TGGCCA	1 cut(s)	1380
MspA1I	CMGCKG	1 cut(s)	1711
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	584, 882
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	1200
MvaI	CCWGG	2 cut(s)	584, 882
MvnI	CGCG	1 cut(s)	2810
MwoI	GCNNNNNNNGC	9 cut(s)	57, 98, 331, 494, 584, 1925, 2696, 2753, 2876
NdeI	CATATG	1 cut(s)	1292
NlaIII	CATG	6 cut(s)	308, 505, 599, 985, 1894, 1971
NlaIV	GGNNCC	8 cut(s)	487, 567, 1068, 1768, 1769, 2116, 2264, 2746
NmeAIII	GCCGAG	2 cut(s)	148, 585
NmuCI	GTSAC	3 cut(s)	719, 829, 2856
PaeR7I	CTCGAG	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	2 cut(s)	2299, 2526
PctI	GAATGC	1 cut(s)	1200
PdmI	GAANNNNTTC	2 cut(s)	1728, 2430
PflFI	GACNNNGTC	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	3031
PkrI	GCNGC	8 cut(s)	23, 94, 97, 100, 1400, 1780, 1837, 2511
Ple19I	CGATCG	1 cut(s)	165
PleI	GAGTC	3 cut(s)	45, 1507, 2609
PpsI	GAGTC	3 cut(s)	45, 1507, 2609
PpuMI	RGGWCCY	1 cut(s)	1767
PshBI	ATTAAT	1 cut(s)	2339
Psp124BI	GAGCTC	2 cut(s)	452, 2176
Psp1406I	AACGTT	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	1767
Psp6I	CCWGG	2 cut(s)	582, 880
PspGI	CCWGG	2 cut(s)	582, 880
PspN4I	GGNNCC	8 cut(s)	487, 567, 1068, 1768, 1769, 2116, 2264, 2746
PspPI	GGNCC	5 cut(s)	1066, 1434, 1767, 2212, 2745
PspPPI	RGGWCCY	1 cut(s)	1767
PspXI	VCTCGAGB	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	2452
PsyI	GACNNNGTC	1 cut(s)	267
PvuI	CGATCG	1 cut(s)	165
RsaI	GTAC	6 cut(s)	1185, 1342, 1848, 1913, 2272, 2555
RsaNI	GTAC	6 cut(s)	1184, 1341, 1847, 1912, 2271, 2554
RseI	CAYNNNNRTG	1 cut(s)	915
SacI	GAGCTC	2 cut(s)	452, 2176
SatI	GCNGC	8 cut(s)	22, 93, 96, 99, 1399, 1779, 1836, 2510
Sau96I	GGNCC	5 cut(s)	1066, 1434, 1767, 2212, 2745
ScaI	AGTACT	1 cut(s)	2555
SchI	GAGTC	3 cut(s)	46, 1508, 2610
ScrFI	CCNGG	2 cut(s)	584, 882
SduI	GDGCHC	6 cut(s)	336, 452, 826, 2176, 2529, 2935
SfaNI	GCATC	5 cut(s)	538, 990, 1330, 1963, 2043
SfcI	CTRYAG	1 cut(s)	2652
Sfr274I	CTCGAG	1 cut(s)	451
SinI	GGWCC	1 cut(s)	1767
SlaI	CTCGAG	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	915
SmlI	CTYRAG	6 cut(s)	445, 451, 458, 1364, 2196, 2586
SmoI	CTYRAG	6 cut(s)	445, 451, 458, 1364, 2196, 2586
SpeI	ACTAGT	2 cut(s)	398, 2077
Sse9I	AATT	5 cut(s)	471, 1100, 1901, 2007, 2816
SspMI	CTAG	4 cut(s)	399, 1338, 1850, 2078
SstI	GAGCTC	2 cut(s)	452, 2176
StyD4I	CCNGG	2 cut(s)	582, 880
TaaI	ACNGT	9 cut(s)	299, 468, 649, 1041, 1494, 1564, 2356, 2615, 2965
TaiI	ACGT	3 cut(s)	342, 919, 1588
TaqI	TCGA	9 cut(s)	165, 452, 801, 1162, 2047, 2302, 2571, 2693, 2997
TasI	AATT	5 cut(s)	471, 1100, 1901, 2007, 2816
TatI	WGTACW	5 cut(s)	1183, 1340, 1846, 1911, 2553
TauI	GCSGC	2 cut(s)	24, 1401
TscAI	CASTG	5 cut(s)	304, 327, 1083, 2940, 2970
TseFI	GTSAC	3 cut(s)	719, 829, 2856
TseI	GCWGC	6 cut(s)	92, 95, 98, 1778, 1835, 2509
Tsp45I	GTSAC	3 cut(s)	719, 829, 2856
TspGWI	ACGGA	1 cut(s)	2288
TspRI	CASTG	5 cut(s)	304, 327, 1083, 2940, 2970
Tth111I	GACNNNGTC	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	3031
VneI	GTGCAC	1 cut(s)	2931
VpaK11BI	GGWCC	1 cut(s)	1767
VspI	ATTAAT	1 cut(s)	2339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2165
XhoI	CTCGAG	1 cut(s)	451
XmiI	GTMKAC	2 cut(s)	262, 2331
XmnI	GAANNNNTTC	2 cut(s)	1728, 2430
XspI	CTAG	4 cut(s)	399, 1338, 1850, 2078
ZrmI	AGTACT	1 cut(s)	2555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.