Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003840

Physical Location & Seq

Genomic Coordinates Reverse (-)

8321017 .. 8321553

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGGATGAGAAACCAGAAACTGTGGCGCATCCCGTTGTTCCTAAAGTTGGAAAGGGAGAGGTTGGTGTTGAGGATGGCTGTGTATTTTTGAGCGACAATAAGATAGTTAAAGAATCAGGGAGGCAGAGTGGTAGTGTTAAAGAGTGCTATGAATCTGATGAGATTATTGTGATCGATGATTCTACTGATGATTGTGCTCTGGAGACTGGTAGTTGTATTACTTGGAGTGGTCTCACATCTACTTACAAGTTGCCCCGGAAGATTGCGACGATGGTCCTTCCACATCAGCTTGATGGCCTGAAATGCCTACGGTCTCTGCATTGTCAGGGAAGGGGTGGAATCCTAGGTGATGGCATGGTCTTGGGCAAAACGATGCAGGTAGCGGAAGAGGATACTTTTAACAGATTTATAACTTTGGTGCCCTTTTCTTCTTTTGCAAAATTTATAGGTACTGGTTTTACCTTATTACAGATTTGTAGCTTCGTAGGAGGATTATTTCATTCTATTGCTTTCCCATATAATTTATTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

179

Amino Acids

19.3

Weight (kDa)

5.17

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63950 AT5G63950
fragaria_vesca	FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690
malus_domestica	MD15G1135400.v1.1 MD15G1135700.v1.1
prunus_persica	Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1
pyrus_communis	pycom01g00590 pycom15g12200 pycom15g12220
rosa_chinensis	RchiOBHm_Chr2g0122191
rosa_laevigata	RLG00000018669
rosa_multiflora	Rmu_co7987670.1_g000001 Rmu_co8056046.1_g000001 Rmu_sc0000805.1_g000001 Rmu_sc0003133.1_g000012 Rmu_sc0004574.1_g000007 Rmu_sc0013150.1_g000001 Rmu_sc0025362.1_g000002
rosa_roxburghii	Rroxscaffold_2G00121780
rosa_rugosa	Rorug02G0237100
rosa_samantha	Rh2AG295600 Rh2BG304600 Rh2CG282900 Rh2DG319500
rosa_wichuraiana	Rw2G023540 Rw2G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	421
AciI	CCGC	2 cut(s)	5, 386
AcsI	RAATTY	1 cut(s)	443
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	292, 483
AluI	AGCT	2 cut(s)	292, 483
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	3 cut(s)	200, 239, 321
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	443
AspA2I	CCTAGG	1 cut(s)	346
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	277
AvrII	CCTAGG	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	426
BanI	GGYRCC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	202
BccI	CCATC	4 cut(s)	71, 268, 290, 347
BciVI	GTATCC	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	3 cut(s)	200, 239, 321
BfaI	CTAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	370
BfuI	GTATCC	1 cut(s)	388
BlnI	CCTAGG	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	2 cut(s)	40, 366
BoxI	GACNNNNGTC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	259
Bsa29I	ATCGAT	1 cut(s)	177
BsaI	GGTCTC	2 cut(s)	239, 321
BsaJI	CCNNGG	2 cut(s)	257, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	214, 460
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	2 cut(s)	257, 346
BseGI	GGATG	3 cut(s)	13, 31, 82
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	214, 460
BseSI	GKGCMC	1 cut(s)	426
BshFI	GGCC	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	421
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	3 cut(s)	200, 239, 321
BsnI	GGCC	1 cut(s)	300
Bso31I	GGTCTC	2 cut(s)	239, 321
Bsp1286I	GDGCHC	2 cut(s)	202, 426
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	2 cut(s)	5, 386
BspANI	GGCC	1 cut(s)	300
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	423
BspMI	ACCTGC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	421
BspTNI	GGTCTC	2 cut(s)	239, 321
BsrI	ACTGG	2 cut(s)	214, 460
BssECI	CCNNGG	2 cut(s)	257, 346
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	25, 315
Bst6I	CTCTTC	1 cut(s)	384
BstF5I	GGATG	3 cut(s)	13, 31, 82
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	3 cut(s)	200, 239, 321
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	257
BstSLI	GKGCMC	1 cut(s)	426
Bsu15I	ATCGAT	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	13, 31, 82
BveI	ACCTGC	1 cut(s)	370
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	4 cut(s)	81, 292, 300, 483
CviKI_1	RGCY	4 cut(s)	81, 292, 300, 483
CviQI	GTAC	1 cut(s)	453
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	346
Eco31I	GGTCTC	2 cut(s)	239, 321
Eco47I	GGWCC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	1 cut(s)	361
FaiI	YATR	6 cut(s)	153, 359, 413, 449, 520, 522
FatI	CATG	1 cut(s)	357
FokI	GGATG	3 cut(s)	18, 20, 89
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	1 cut(s)	259
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	4 cut(s)	116, 155, 182, 342
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	1 cut(s)	362
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	290, 327
HpyCH4III	ACNGT	2 cut(s)	25, 315
HpyCH4V	TGCA	3 cut(s)	322, 379, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	9 cut(s)	30, 105, 188, 195, 272, 314, 314, 365, 441
LweI	GCATC	2 cut(s)	40, 366
MaeI	CTAG	1 cut(s)	347
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	3 cut(s)	274, 401, 423
MhlI	GDGCHC	2 cut(s)	202, 426
MluCI	AATT	2 cut(s)	443, 523
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	5 cut(s)	55, 67, 117, 385, 485
MseI	TTAA	3 cut(s)	111, 141, 402
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	306
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	1 cut(s)	423
PfeI	GAWTC	4 cut(s)	116, 155, 182, 342
PshAI	GACNNNNGTC	1 cut(s)	275
PsiI	TTATAA	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SaqAI	TTAA	3 cut(s)	111, 141, 402
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	2 cut(s)	202, 426
SetI	ASST	7 cut(s)	66, 294, 352, 384, 454, 467, 485
SfaNI	GCATC	2 cut(s)	40, 366
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	2 cut(s)	443, 523
SsiI	CCGC	2 cut(s)	5, 386
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	25, 315
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	443, 523
TfiI	GAWTC	4 cut(s)	116, 155, 182, 342
Tru1I	TTAA	3 cut(s)	111, 141, 402
Tru9I	TTAA	3 cut(s)	111, 141, 402
TspDTI	ATGAA	2 cut(s)	168, 491
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	443
XmaJI	CCTAGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.