Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8056046.1

Orthogroup ID

OG0003840

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 505

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8056046.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgcagattctgaagaaaatatgtgatcatccacttctattgacaaagcgagctgctgaagatgtactagaagagttggattcattgcttaagccagatgatgcttgtatggcagaaaaactagcaatgcatatagcagatgttgctgagaaagaggagtttgatgagaaccatgcaaatctctcttgcaaaatatcttttataatgtcattgttggataacttgattcctgaggggcataatgttctcatcttttcccaaactagaaagatgcttaatcttattcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

96

Amino Acids

10.92

Weight (kDa)

4.91

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63950 AT5G63950
fragaria_vesca	FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690
malus_domestica	MD15G1135400.v1.1 MD15G1135700.v1.1
prunus_persica	Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1
pyrus_communis	pycom01g00590 pycom15g12200 pycom15g12220
rosa_chinensis	RchiOBHm_Chr2g0122191
rosa_laevigata	RLG00000018669
rosa_multiflora	Rmu_co7987670.1_g000001 Rmu_co8056046.1_g000001 Rmu_sc0000805.1_g000001 Rmu_sc0003133.1_g000012 Rmu_sc0004574.1_g000007 Rmu_sc0013150.1_g000001 Rmu_sc0025362.1_g000002
rosa_roxburghii	Rroxscaffold_2G00121780
rosa_rugosa	Rorug02G0237100
rosa_samantha	Rh2AG295600 Rh2BG304600 Rh2CG282900 Rh2DG319500
rosa_wichuraiana	Rw2G023540 Rw2G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
AcuI	CTGAAG	2 cut(s)	32, 78
AfaI	GTAC	1 cut(s)	66
AflII	CTTAAG	1 cut(s)	89
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	53
AxyI	CCTNAGG	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	40
BclI	TGATCA	1 cut(s)	25
BfaI	CTAG	3 cut(s)	68, 122, 264
BfrI	CTTAAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmsI	GCATC	2 cut(s)	91, 261
Bse21I	CCTNAGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	83, 132
BseGI	GGATG	1 cut(s)	28
BseMI	GCAATG	2 cut(s)	83, 132
BseMII	CTCAG	2 cut(s)	138, 222
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	25
BspCNI	CTCAG	2 cut(s)	139, 223
BspTI	CTTAAG	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	83, 132
BssMI	GATC	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	66
BstAFI	CTTAAG	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	147, 231
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 143
BstV1I	GCAGC	1 cut(s)	40
Bsu36I	CCTNAGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	51
CaiI	CAGNNNCTG	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	65
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	2 cut(s)	53, 94
CviKI_1	RGCY	2 cut(s)	53, 94
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	2 cut(s)	147, 231
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	32, 78
Eco81I	CCTNAGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	132
FaeI	CATG	1 cut(s)	176
FaiI	YATR	7 cut(s)	22, 110, 132, 134, 174, 203, 240
FatI	CATG	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	3 cut(s)	68, 122, 264
GluI	GCNGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	3 cut(s)	7, 80, 226
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	230
HpyCH4V	TGCA	4 cut(s)	4, 130, 176, 189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 143
HpyF3I	CTNAG	2 cut(s)	147, 231
Hsp92II	CATG	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	2 cut(s)	108, 243
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	2 cut(s)	91, 261
MaeI	CTAG	3 cut(s)	68, 122, 264
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	3 cut(s)	25, 71, 83
MmeI	TCCRAC	2 cut(s)	57, 195
MnlI	CCTC	2 cut(s)	148, 226
Mph1103I	ATGCAT	1 cut(s)	132
MseI	TTAA	2 cut(s)	90, 276
MspCI	CTTAAG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	110, 143
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	132
PfeI	GAWTC	3 cut(s)	7, 80, 226
PkrI	GCNGC	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	90, 276
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	25
SetI	ASST	1 cut(s)	55
SfaNI	GCATC	2 cut(s)	91, 261
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SspMI	CTAG	3 cut(s)	68, 122, 264
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	3 cut(s)	7, 80, 226
Tru1I	TTAA	2 cut(s)	90, 276
Tru9I	TTAA	2 cut(s)	90, 276
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	72
Vha464I	CTTAAG	1 cut(s)	89
XspI	CTAG	3 cut(s)	68, 122, 264
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.