Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003840

Physical Location & Seq

Genomic Coordinates Forward (+)

627042 .. 635022

Gene Structure 7981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g00590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3051 bp

ATGGCGGAGAGGAAAAGCAGCAAAAAACCAGAGAGTCTAAACGACAGCCACTATCGCCTCCTTCAAGACCTCCTCTCTCCTCCTCCTCCTGCTGCTAATCCTTCTTCGACCCCCGCCGCAGAGGACGATAAAGTGGAAATGGAGGACCTGAAGCCACCGATCGAGGGCCAACGTGTTCGCAACCTTCCTCATTTCTCACTCACAGATTTTGAATCTTCTCCTGAAGAAGAAAAAACTACAAAGATTAAGATTGAAGGTAGACGCCGTCTTTGTAAAGTTTCTTATCGTGCTGACAGTGATCTTGCTGACAAACAACCGGTTCTTGATAAGCCCAACATTTCTGGCATTGCTGATTATGAATCACTGGCAGTCCCGAAAAGGAATCCAAGTACGACTAGTGCCAATGCTGGTGGGAATGAGATTAGGGATATTCTTGATGACTTGAGCTCGAGGCTTGAGTTTCTGTCAATTGAGAGGAGGGTTGCCAGAAAAGCAGACATTGTTGAAGGTTCTAATGTGTCTGAAACCAAGGGCGAGGAGGCAGATGCTTATTTGCCGAGTGAACAACTTGGTGATAGTTATGTGAACAGGCTGCCTACAAAACATGATGGTCAAAAGAAAATAAAGACTTTATGGGTGGATGAGAAACCAAAAGCCGTGGCACATCCCATTGTTCCTAAAGTTGGAAAAAGAGAGGTTGATGATGAGGATGACTGTGTATTTTTGAGCGGCAATAAGATAGTTAAAATATCAGGGAGTCAGAGTGGTAAGGTTCAAGAGCGCTATGAATCTGATGAGCTTATTGTAATCAATGATTCTACTGATGATTGTGTTCTGGAGACTGATAGTTCTATTACTTTGAGCGGTCTCACATCTACTTACAAGTTGCCAGGGAAGATTGCGATGATGTTGTTTCCGCATCAACGTGATGGCCTAAAGTGGCTATGGTCTCTGCATTGTCAGGGAAAGGGTGGAATCTTAGGTGATGACATGGGCTTGGGCAAAACGATGCAGATTTGTAGCTTCTTAGCAGGATTATTTCATTCACAGTTGATTAAAAGAGTTATGGTTGTGGCCCCTAAAACACTGCTTTCCCATTGGATTAAAGAATTATCATCTGTGGGTCTCGTTGATAAGATAAGAGAGTATTATGGGACTTGTGCCAAGGCTCGAAAATATGAGCTTCAGTATGTACTTCAGGACAAAGGCATTCTTCTCACAACTTATGATATTGTGCGGGTTAACTCAAAATCTTTAAGAGTGGGTGAATATGCTCATGATGATGGAAGTGAAGATATCATATGGGATTATATGATACTTGATGAGGGACATCTCATAAAGAACCCTAGTACACAAAGAGCCAAAAGTTTGCTTGAGATACCTTGTGCCCATCGCATTATTGTAAGTGGCACACCATTGCAAAACAATCTGAAGGAGTTGTGGGCCTTGTTCAACTTCTGTTGCCCTGAGCTACTGGGTGATAAGAAATGTTTTAAGGAACAGTACGAGTCTCTCATTCTTCGTGGAAACGAGAAAAATGCTTTGGATAGGGAAAAGTGTATTGGTTCGACGGTTGCAAAGGAACTAAGAGAACGTATTAAACCTTTTTTTCTGCGTCGCTTAAAGAATGAGGTATTTAATGAAGATAATGACCAAACAAGTGCCAAACTTTCTAAAAAGAACGAGATCATTGTTTGGTTAAGATTGACCGGCTGTCAGCGGAAACTATATGAAGCTTTTCTAAAGAGTGAGCTGGTTCTTTCTGCTTTTGATGGCTCCCCGTTGGCTGCACTTACGATCCTGAAGAAAATATGTGATCATCCACTTTTATTGACAAAGCGAGCTGCTGAAGATGTACTAGAAGAGATGGATTCAATGTTGAAGCCAGATGAAACTTGCATGGCAGAAAAATTAGCAATGTACATAGCAGATGTCGCTGACAGAGAGGACTTTGATGAAAAGCATGCCAACCTGTCATGCAAAATATCTTTTATATTGTCTTTACTGGAAGACTTAATTCCTCAGGGGCATAATGTTCTTATTTTCTCACAAACTCGAAAGATGCTTAATCTTATTCAGGAATCACTAGTATCCAATGGTTACGAGTTCATACGCATTGATGGAACCACAAAAGCTATTGACAGAATGAGGGTTGTTAATGATTTCCAAGAAGGTAATGGAGCTCCCATATTTCTCCTGACATCTCAAGTAGGTGGTTTGGGCCTTACACTTACAAGAGCAGATCGTGTTATAGTGGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTGGATCGTGCATATCGAATCGGGCAAAATAAGGATGTCATTGTGTACAGATTAATGACTTGTGGGACTGTTGAAGAAAAGATATACAGAAAACAGATATACAAGGGGGGATTGTTTAAAACTGCAACTGAGCATAAAGAACAGATTCGGTACTTTAGTCAGCAGGATCTCTGTGAACTTTTCAGTCTTCCAAAAGAGGGTTTTGATGTATCCCCTACTCAACAGCAGCTATATGAGGAGCACGATCGCCAGCACACAATGGACAAGTACTTCAAGTCCCATATCGAGTTCTTGGAAACTCAAGGTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACCTCTACCTGTTGCCAAAGGAGTAGAAGACGAAGTTGAAAGAATCAGAGGAGCTTCAAATGCAGGAAGTTCATTTTCAAGTTCTTTACAAGAACGCAATGTGAATGGGGCTGAATATGCTTTCAAACCAAAGGATTTAATCTTAAACAAGAAGCCTTCTTCACCAATTGATGCGGGTAAATTGACAGAATCAGAGATTAAACAAAGAATCAACAGGCTGTCACAAACTCTTGCAAATAAGGCATTGGTTTCAAGATTACCAGATAAGGGGGAGAAAATACAAAAGCAAATTGGTGAACTAAATGCTGAGCTTTATAGACTTGGTACAGGGGAAGTGGAGGGAAATGAGAGAAATGCTATCGACTTAGATGATATAACTGGGGAGTTCCAAAGGGTGGTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1017

Amino Acids

114.33

Weight (kDa)

5.93

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63950 AT5G63950
fragaria_vesca	FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690
malus_domestica	MD15G1135400.v1.1 MD15G1135700.v1.1
prunus_persica	Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1
pyrus_communis	pycom01g00590 pycom15g12200 pycom15g12220
rosa_chinensis	RchiOBHm_Chr2g0122191
rosa_laevigata	RLG00000018669
rosa_multiflora	Rmu_co7987670.1_g000001 Rmu_co8056046.1_g000001 Rmu_sc0000805.1_g000001 Rmu_sc0003133.1_g000012 Rmu_sc0004574.1_g000007 Rmu_sc0013150.1_g000001 Rmu_sc0025362.1_g000002
rosa_roxburghii	Rroxscaffold_2G00121780
rosa_rugosa	Rorug02G0237100
rosa_samantha	Rh2AG295600 Rh2BG304600 Rh2CG282900 Rh2DG319500
rosa_wichuraiana	Rw2G023540 Rw2G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	3040
AccBSI	CCGCTC	2 cut(s)	729, 864
AccI	GTMKAC	1 cut(s)	259
AciI	CCGC	9 cut(s)	5, 114, 117, 729, 864, 917, 1237, 1720, 2819
AclWI	GGATC	4 cut(s)	1792, 2255, 2307, 2469
AcuI	CTGAAG	7 cut(s)	170, 243, 1169, 1181, 1451, 1823, 1869
AcyI	GRCGYC	1 cut(s)	262
AfeI	AGCGCT	1 cut(s)	782
AfiI	CCNNNNNNNGG	6 cut(s)	164, 683, 2281, 2492, 2912, 3040
AflIII	ACRYGT	1 cut(s)	172
AgeI	ACCGGT	1 cut(s)	316
AhdI	GACNNNNNGTC	1 cut(s)	1713
AhlI	ACTAGT	2 cut(s)	395, 2086
AjnI	CCWGG	1 cut(s)	889
AjuI	GAANNNNNNNTTGG	4 cut(s)	1526, 1545, 1558, 1577
Alw21I	GWGCWC	3 cut(s)	449, 2185, 2538
Alw26I	GTCTC	5 cut(s)	833, 872, 954, 1130, 1515
AlwI	GGATC	4 cut(s)	1792, 2255, 2307, 2469
Ama87I	CYCGRG	1 cut(s)	448
Aor51HI	AGCGCT	1 cut(s)	782
AoxI	GGCC	5 cut(s)	166, 931, 1074, 1443, 2221
ApeKI	GCWGC	6 cut(s)	18, 92, 592, 1787, 1844, 2521
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
AseI	ATTAAT	1 cut(s)	2348
AsiGI	ACCGGT	1 cut(s)	316
Asp700I	GAANNNNTTC	2 cut(s)	1737, 2439
AspLEI	GCGC	1 cut(s)	783
AspS9I	GGNCC	5 cut(s)	145, 166, 1075, 1443, 2221
AsuHPI	GGTGA	6 cut(s)	584, 995, 1277, 1490, 2799, 2951
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	145
AxyI	CCTNAGG	1 cut(s)	2022
BaeGI	GKGCMC	1 cut(s)	1390
BaeI	ACNNNNGTAYC	2 cut(s)	2437, 2470
BanII	GRGCYC	2 cut(s)	449, 2185
BbsI	GAAGAC	3 cut(s)	2016, 2474, 2679
Bbv12I	GWGCWC	3 cut(s)	449, 2185, 2538
BbvI	GCAGC	6 cut(s)	30, 79, 579, 1774, 1831, 2533
BccI	CCATC	7 cut(s)	602, 923, 1277, 1398, 1766, 1861, 2114
BceAI	ACGGC	2 cut(s)	249, 641
BcgI	CGANNNNNNTGC	2 cut(s)	1520, 1554
BciT130I	CCWGG	1 cut(s)	891
BciVI	GTATCC	2 cut(s)	2101, 2515
BclI	TGATCA	1 cut(s)	1816
BcoDI	GTCTC	5 cut(s)	833, 872, 954, 1130, 1515
BcuI	ACTAGT	2 cut(s)	395, 2086
BfaI	CTAG	4 cut(s)	396, 1347, 1859, 2087
BfoI	RGCGCY	1 cut(s)	784
BfuI	GTATCC	2 cut(s)	2101, 2515
BisI	GCNGC	8 cut(s)	19, 93, 117, 593, 730, 1788, 1845, 2522
BlpI	GCTNAGC	1 cut(s)	2952
BlsI	GCNGC	8 cut(s)	20, 94, 118, 594, 731, 1789, 1846, 2523
BmcAI	AGTACT	1 cut(s)	2564
Bme1390I	CCNGG	1 cut(s)	891
Bme18I	GGWCC	1 cut(s)	145
BmeRI	GACNNNNNGTC	1 cut(s)	1713
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	5 cut(s)	145, 166, 1075, 1443, 2221
BmiI	GGNNCC	4 cut(s)	1077, 1777, 2125, 2273
BmrFI	CCNGG	1 cut(s)	891
BmrI	ACTGGG	2 cut(s)	1484, 3033
BmsI	GCATC	5 cut(s)	535, 928, 999, 2052, 2806
BmuI	ACTGGG	2 cut(s)	1484, 3033
BpiI	GAAGAC	3 cut(s)	2016, 2474, 2679
BpmI	CTGGAG	1 cut(s)	857
Bpu10I	CCTNAGC	1 cut(s)	1467
Bpu1102I	GCTNAGC	1 cut(s)	2952
BpuEI	CTTGAG	5 cut(s)	463, 476, 1394, 2190, 2580
BsaHI	GRCGYC	1 cut(s)	262
BsaI	GGTCTC	3 cut(s)	872, 954, 1130
BsaJI	CCNNGG	4 cut(s)	528, 657, 890, 1164
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	748, 778
Bsc4I	CCNNNNNNNGG	6 cut(s)	164, 683, 2281, 2492, 2912, 3040
Bse118I	RCCGGY	2 cut(s)	316, 1709
Bse1I	ACTGG	4 cut(s)	369, 1479, 2010, 3028
Bse21I	CCTNAGG	1 cut(s)	2022
Bse3DI	GCAATG	4 cut(s)	345, 1415, 1923, 2749
BseBI	CCWGG	1 cut(s)	891
BseDI	CCNNGG	4 cut(s)	528, 657, 890, 1164
BseGI	GGATG	5 cut(s)	646, 664, 715, 1819, 2335
BseLI	CCNNNNNNNGG	6 cut(s)	164, 683, 2281, 2492, 2912, 3040
BseMI	GCAATG	4 cut(s)	345, 1415, 1923, 2749
BseMII	CTCAG	4 cut(s)	1458, 2036, 2415, 2943
BseNI	ACTGG	4 cut(s)	369, 1479, 2010, 3028
BseRI	GAGGAG	8 cut(s)	62, 69, 72, 75, 490, 551, 2546, 2709
BseSI	GKGCMC	1 cut(s)	1390
BseXI	GCAGC	6 cut(s)	30, 79, 579, 1774, 1831, 2533
BsgI	GTGCAG	1 cut(s)	1773
Bsh1285I	CGRYCG	2 cut(s)	162, 2542
BshFI	GGCC	5 cut(s)	168, 933, 1076, 1445, 2223
BshTI	ACCGGT	1 cut(s)	316
BsiEI	CGRYCG	2 cut(s)	162, 2542
BsiHKAI	GWGCWC	3 cut(s)	449, 2185, 2538
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	2 cut(s)	317, 1710
BslFI	GGGAC	5 cut(s)	356, 1168, 1341, 2374, 2557
BslI	CCNNNNNNNGG	6 cut(s)	164, 683, 2281, 2492, 2912, 3040
BsmAI	GTCTC	5 cut(s)	833, 872, 954, 1130, 1515
BsmFI	GGGAC	5 cut(s)	356, 1168, 1341, 2374, 2557
BsmI	GAATGC	1 cut(s)	1209
BsnI	GGCC	5 cut(s)	168, 933, 1076, 1445, 2223
Bso31I	GGTCTC	3 cut(s)	872, 954, 1130
BsoBI	CYCGRG	1 cut(s)	448
Bsp1286I	GDGCHC	4 cut(s)	449, 1390, 2185, 2538
Bsp1407I	TGTACA	2 cut(s)	1920, 2340
Bsp1720I	GCTNAGC	1 cut(s)	2952
BspACI	CCGC	9 cut(s)	5, 114, 117, 729, 864, 917, 1237, 1720, 2819
BspANI	GGCC	5 cut(s)	168, 933, 1076, 1445, 2223
BspCNI	CTCAG	4 cut(s)	1459, 2035, 2416, 2944
BspHI	TCATGA	1 cut(s)	1276
BspLI	GGNNCC	4 cut(s)	1077, 1777, 2125, 2273
BspPI	GGATC	4 cut(s)	1792, 2255, 2307, 2469
BspTNI	GGTCTC	3 cut(s)	872, 954, 1130
BsrBI	CCGCTC	2 cut(s)	729, 864
BsrDI	GCAATG	4 cut(s)	345, 1415, 1923, 2749
BsrFI	RCCGGY	2 cut(s)	316, 1709
BsrGI	TGTACA	2 cut(s)	1920, 2340
BsrI	ACTGG	4 cut(s)	369, 1479, 2010, 3028
BssAI	RCCGGY	2 cut(s)	316, 1709
BssECI	CCNNGG	4 cut(s)	528, 657, 890, 1164
BssNI	GRCGYC	1 cut(s)	262
BssT1I	CCWWGG	2 cut(s)	528, 1164
Bst2UI	CCWGG	1 cut(s)	891
Bst4CI	ACNGT	7 cut(s)	296, 716, 1050, 1503, 1573, 2365, 2624
Bst6I	CTCTTC	2 cut(s)	1857, 2636
BstACI	GRCGYC	1 cut(s)	262
BstAUI	TGTACA	2 cut(s)	1920, 2340
BstC8I	GCNNGC	3 cut(s)	1842, 1965, 2546
BstDEI	CTNAG	8 cut(s)	979, 1027, 1467, 1586, 2022, 2424, 2952, 3010
BstDSI	CCRYGG	1 cut(s)	657
BstF5I	GGATG	5 cut(s)	646, 664, 715, 1819, 2335
BstH2I	RGCGCY	1 cut(s)	784
BstHHI	GCGC	1 cut(s)	783
BstMAI	GTCTC	5 cut(s)	833, 872, 954, 1130, 1515
BstMCI	CGRYCG	2 cut(s)	162, 2542
BstMWI	GCNNNNNNNGC	6 cut(s)	54, 491, 1934, 2705, 2762, 2885
BstNI	CCWGG	1 cut(s)	891
BstNSI	RCATGY	1 cut(s)	1967
BstSCI	CCNGG	1 cut(s)	889
BstSLI	GKGCMC	1 cut(s)	1390
BstV1I	GCAGC	6 cut(s)	30, 79, 579, 1774, 1831, 2533
BstV2I	GAAGAC	3 cut(s)	2016, 2474, 2679
BstX2I	RGATCY	1 cut(s)	2461
BstYI	RGATCY	1 cut(s)	2461
Bsu36I	CCTNAGG	1 cut(s)	2022
BsuI	GTATCC	2 cut(s)	2101, 2515
BsuRI	GGCC	5 cut(s)	168, 933, 1076, 1445, 2223
BtgI	CCRYGG	1 cut(s)	657
BtgZI	GCGATG	2 cut(s)	917, 1376
BtsCI	GGATG	5 cut(s)	646, 664, 715, 1819, 2335
BtsI	GCAGTG	1 cut(s)	1085
BtsIMutI	CAGTG	3 cut(s)	301, 362, 1085
Cac8I	GCNNGC	3 cut(s)	1842, 1965, 2546
CciI	TCATGA	1 cut(s)	1276
CfoI	GCGC	1 cut(s)	783
Cfr10I	RCCGGY	2 cut(s)	316, 1709
Cfr13I	GGNCC	5 cut(s)	145, 166, 1075, 1443, 2221
CseI	GACGC	2 cut(s)	270, 1604
CspAI	ACCGGT	1 cut(s)	316
CspCI	CAANNNNNGTGG	6 cut(s)	391, 426, 639, 674, 1812, 1847
CviAII	CATG	6 cut(s)	605, 991, 1277, 1900, 1964, 1977
DdeI	CTNAG	8 cut(s)	979, 1027, 1467, 1586, 2022, 2424, 2952, 3010
DraI	TTTAAA	1 cut(s)	2413
DriI	GACNNNNNGTC	1 cut(s)	1713
Eam1104I	CTCTTC	2 cut(s)	1857, 2636
Eam1105I	GACNNNNNGTC	1 cut(s)	1713
EarI	CTCTTC	2 cut(s)	1857, 2636
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	447, 2183
Eco130I	CCWWGG	2 cut(s)	528, 1164
Eco24I	GRGCYC	2 cut(s)	449, 2185
Eco31I	GGTCTC	3 cut(s)	872, 954, 1130
Eco32I	GATATC	1 cut(s)	1297
Eco47I	GGWCC	1 cut(s)	145
Eco47III	AGCGCT	1 cut(s)	782
Eco53kI	GAGCTC	2 cut(s)	447, 2183
Eco57I	CTGAAG	7 cut(s)	170, 243, 1169, 1181, 1451, 1823, 1869
Eco81I	CCTNAGG	1 cut(s)	2022
Eco88I	CYCGRG	1 cut(s)	448
EcoICRI	GAGCTC	2 cut(s)	447, 2183
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	889
EcoRV	GATATC	1 cut(s)	1297
EcoT14I	CCWWGG	2 cut(s)	528, 1164
EcoT38I	GRGCYC	2 cut(s)	449, 2185
ErhI	CCWWGG	2 cut(s)	528, 1164
FaeI	CATG	6 cut(s)	608, 994, 1280, 1903, 1967, 1980
FalI	AAGNNNNNCTT	2 cut(s)	1197, 1229
FaqI	GGGAC	5 cut(s)	356, 1168, 1341, 2374, 2557
FatI	CATG	6 cut(s)	604, 990, 1276, 1899, 1963, 1976
FauI	CCCGC	3 cut(s)	121, 1230, 2812
FauNDI	CATATG	1 cut(s)	1301
FbaI	TGATCA	1 cut(s)	1816
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	8 cut(s)	19, 93, 117, 593, 730, 1788, 1845, 2522
FokI	GGATG	5 cut(s)	651, 653, 722, 1806, 2342
FriOI	GRGCYC	2 cut(s)	449, 2185
Fsp4HI	GCNGC	8 cut(s)	19, 93, 117, 593, 730, 1788, 1845, 2522
FspBI	CTAG	4 cut(s)	396, 1347, 1859, 2087
GlaI	GCGC	1 cut(s)	782
GluI	GCNGC	8 cut(s)	19, 93, 117, 593, 730, 1788, 1845, 2522
GsuI	CTGGAG	1 cut(s)	857
HaeII	RGCGCY	1 cut(s)	784
HaeIII	GGCC	5 cut(s)	168, 933, 1076, 1445, 2223
HapII	CCGG	2 cut(s)	317, 1710
HgaI	GACGC	2 cut(s)	270, 1604
HhaI	GCGC	1 cut(s)	783
Hin1I	GRCGYC	1 cut(s)	262
Hin1II	CATG	6 cut(s)	608, 994, 1280, 1903, 1967, 1980
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HincII	GTYRAC	1 cut(s)	1243
HindII	GTYRAC	1 cut(s)	1243
HindIII	AAGCTT	1 cut(s)	1734
HpaI	GTTAAC	1 cut(s)	1243
HpaII	CCGG	2 cut(s)	317, 1710
HphI	GGTGA	6 cut(s)	584, 995, 1277, 1490, 2799, 2951
Hpy166II	GTNNAC	9 cut(s)	260, 563, 586, 1243, 1352, 2341, 2471, 2627, 2942
Hpy188I	TCNGA	6 cut(s)	523, 762, 793, 1431, 2693, 2839
Hpy8I	GTNNAC	9 cut(s)	260, 563, 586, 1243, 1352, 2341, 2471, 2627, 2942
Hpy99I	CGWCG	2 cut(s)	1573, 1620
HpyAV	CCTTC	8 cut(s)	71, 111, 194, 248, 500, 1426, 2165, 2811
HpyCH4III	ACNGT	7 cut(s)	296, 716, 1050, 1503, 1573, 2365, 2624
HpyCH4IV	ACGT	3 cut(s)	172, 925, 1594
HpyF10VI	GCNNNNNNNGC	6 cut(s)	54, 491, 1934, 2705, 2762, 2885
HpyF3I	CTNAG	8 cut(s)	979, 1027, 1467, 1586, 2022, 2424, 2952, 3010
HpySE526I	ACGT	3 cut(s)	172, 925, 1594
Hsp92I	GRCGYC	1 cut(s)	262
Hsp92II	CATG	6 cut(s)	608, 994, 1280, 1903, 1967, 1980
HspAI	GCGC	1 cut(s)	781
Ksp22I	TGATCA	1 cut(s)	1816
KspAI	GTTAAC	1 cut(s)	1243
LmnI	GCTCC	5 cut(s)	1781, 2180, 2188, 2533, 2696
Lsp1109I	GCAGC	6 cut(s)	30, 79, 579, 1774, 1831, 2533
LweI	GCATC	5 cut(s)	535, 928, 999, 2052, 2806
MaeI	CTAG	4 cut(s)	396, 1347, 1859, 2087
MaeII	ACGT	3 cut(s)	172, 925, 1594
MaeIII	GTNAC	2 cut(s)	2099, 2865
MbiI	CCGCTC	2 cut(s)	729, 864
MfeI	CAATTG	2 cut(s)	468, 2811
MflI	RGATCY	1 cut(s)	2461
MhlI	GDGCHC	4 cut(s)	449, 1390, 2185, 2538
MluCI	AATT	7 cut(s)	468, 1109, 1910, 2016, 2811, 2825, 2934
MlyI	GAGTC	4 cut(s)	43, 766, 1517, 2619
MmeI	TCCRAC	1 cut(s)	664
MroXI	GAANNNNTTC	2 cut(s)	1737, 2439
MslI	CAYNNNNRTG	2 cut(s)	924, 1281
MspA1I	CMGCKG	1 cut(s)	1720
MspI	CCGG	2 cut(s)	317, 1710
MspR9I	CCNGG	1 cut(s)	891
MunI	CAATTG	2 cut(s)	468, 2811
Mva1269I	GAATGC	1 cut(s)	1209
MvaI	CCWGG	1 cut(s)	891
MwoI	GCNNNNNNNGC	6 cut(s)	54, 491, 1934, 2705, 2762, 2885
NdeI	CATATG	1 cut(s)	1301
NlaIII	CATG	6 cut(s)	608, 994, 1280, 1903, 1967, 1980
NlaIV	GGNNCC	4 cut(s)	1077, 1777, 2125, 2273
NmeAIII	GCCGAG	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	2865
NspI	RCATGY	1 cut(s)	1967
PaeI	GCATGC	1 cut(s)	1967
PaeR7I	CTCGAG	1 cut(s)	448
PagI	TCATGA	1 cut(s)	1276
PcsI	WCGNNNNNNNCGW	1 cut(s)	2308
PctI	GAATGC	1 cut(s)	1209
PdmI	GAANNNNTTC	2 cut(s)	1737, 2439
PflFI	GACNNNGTC	1 cut(s)	264
PflMI	CCANNNNNTGG	1 cut(s)	3040
PinAI	ACCGGT	1 cut(s)	316
PkrI	GCNGC	8 cut(s)	20, 94, 118, 594, 731, 1789, 1846, 2523
Ple19I	CGATCG	2 cut(s)	162, 2542
PleI	GAGTC	4 cut(s)	42, 765, 1516, 2618
PpsI	GAGTC	4 cut(s)	42, 765, 1516, 2618
PpuMI	RGGWCCY	1 cut(s)	145
PshBI	ATTAAT	1 cut(s)	2348
Psp124BI	GAGCTC	2 cut(s)	449, 2185
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	889
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	4 cut(s)	1077, 1777, 2125, 2273
PspPI	GGNCC	5 cut(s)	145, 166, 1075, 1443, 2221
PspPPI	RGGWCCY	1 cut(s)	145
PspXI	VCTCGAGB	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	2461
PsyI	GACNNNGTC	1 cut(s)	264
PvuI	CGATCG	2 cut(s)	162, 2542
RseI	CAYNNNNRTG	2 cut(s)	924, 1281
SacI	GAGCTC	2 cut(s)	449, 2185
SatI	GCNGC	8 cut(s)	19, 93, 117, 593, 730, 1788, 1845, 2522
Sau96I	GGNCC	5 cut(s)	145, 166, 1075, 1443, 2221
ScaI	AGTACT	1 cut(s)	2564
SchI	GAGTC	4 cut(s)	43, 766, 1517, 2619
ScrFI	CCNGG	1 cut(s)	891
SduI	GDGCHC	4 cut(s)	449, 1390, 2185, 2538
SfaNI	GCATC	5 cut(s)	535, 928, 999, 2052, 2806
Sfr274I	CTCGAG	1 cut(s)	448
SinI	GGWCC	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	448
SmiMI	CAYNNNNRTG	2 cut(s)	924, 1281
SmlI	CTYRAG	6 cut(s)	442, 448, 455, 1373, 2205, 2595
SmoI	CTYRAG	6 cut(s)	442, 448, 455, 1373, 2205, 2595
SpeI	ACTAGT	2 cut(s)	395, 2086
SphI	GCATGC	1 cut(s)	1967
Sse9I	AATT	7 cut(s)	468, 1109, 1910, 2016, 2811, 2825, 2934
SsiI	CCGC	9 cut(s)	5, 114, 117, 729, 864, 917, 1237, 1720, 2819
SspMI	CTAG	4 cut(s)	396, 1347, 1859, 2087
SstI	GAGCTC	2 cut(s)	449, 2185
StyD4I	CCNGG	1 cut(s)	889
StyI	CCWWGG	2 cut(s)	528, 1164
TaaI	ACNGT	7 cut(s)	296, 716, 1050, 1503, 1573, 2365, 2624
TaiI	ACGT	3 cut(s)	175, 928, 1597
TaqI	TCGA	9 cut(s)	107, 162, 449, 1171, 1568, 2056, 2311, 2580, 3006
TasI	AATT	7 cut(s)	468, 1109, 1910, 2016, 2811, 2825, 2934
TatI	WGTACW	6 cut(s)	1192, 1349, 1855, 1920, 2340, 2562
TauI	GCSGC	2 cut(s)	119, 732
TscAI	CASTG	3 cut(s)	301, 369, 1092
TseFI	GTSAC	1 cut(s)	2865
TseI	GCWGC	6 cut(s)	18, 92, 592, 1787, 1844, 2521
Tsp45I	GTSAC	1 cut(s)	2865
TspDTI	ATGAA	9 cut(s)	372, 801, 1031, 1656, 1746, 1905, 1971, 2098, 2706
TspGWI	ACGGA	1 cut(s)	2297
TspRI	CASTG	3 cut(s)	301, 369, 1092
Tth111I	GACNNNGTC	1 cut(s)	264
Van91I	CCANNNNNTGG	1 cut(s)	3040
VpaK11BI	GGWCC	1 cut(s)	145
VspI	ATTAAT	1 cut(s)	2348
XceI	RCATGY	1 cut(s)	1967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2174
XhoI	CTCGAG	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	259
XmnI	GAANNNNTTC	2 cut(s)	1737, 2439
XspI	CTAG	4 cut(s)	396, 1347, 1859, 2087
ZrmI	AGTACT	1 cut(s)	2564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.