Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7987670.1

Orthogroup ID

OG0003840

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 518

Gene Structure 517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7987670.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 517 bp

aggattgaaggcgcgcgccgtctctgtaagattcgagtggcttccgatgatgacgatgatcatggtgagggctttaatgatgacgacgcgcccagtttctccgggattgctgattttgagtcgccgccgcagccgcggaggagtgaagttggaaatggcggtggaaatgagattagggggattttagatgacttgagctccaggcttgagtttttgtcaatcgagaggaagggagccagaaaatctaataaggttgaagattcggggatttcgaaggaagttgatcgggtaaagaaagagaaagttgagtacaagaatgcggcgccttcgttttcgattgcttctgacttgtctgattcctctgctgagaccagtaaaactggtggaaagggagttgagagtgtggtggatgagtatgaagagaaaagtcgttttcgatgcaagttcgaagaggctgatgatgacagagattgtgtggttgtgagggctaagaagacggataaacaagtggggaggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

172

Amino Acids

18.98

Weight (kDa)

5.0

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63950 AT5G63950
fragaria_vesca	FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690
malus_domestica	MD15G1135400.v1.1 MD15G1135700.v1.1
prunus_persica	Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1
pyrus_communis	pycom01g00590 pycom15g12200 pycom15g12220
rosa_chinensis	RchiOBHm_Chr2g0122191
rosa_laevigata	RLG00000018669
rosa_multiflora	Rmu_co7987670.1_g000001 Rmu_co8056046.1_g000001 Rmu_sc0000805.1_g000001 Rmu_sc0003133.1_g000012 Rmu_sc0004574.1_g000007 Rmu_sc0013150.1_g000001 Rmu_sc0025362.1_g000002
rosa_roxburghii	Rroxscaffold_2G00121780
rosa_rugosa	Rorug02G0237100
rosa_samantha	Rh2AG295600 Rh2BG304600 Rh2CG282900 Rh2DG319500
rosa_wichuraiana	Rw2G023540 Rw2G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	322
AccII	CGCG	4 cut(s)	14, 16, 89, 136
AciI	CCGC	6 cut(s)	125, 128, 134, 136, 159, 320
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	8, 257
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	2 cut(s)	26, 362
ApeKI	GCWGC	1 cut(s)	130
AspLEI	GCGC	5 cut(s)	14, 16, 18, 91, 325
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	77
AsuII	TTCGAA	2 cut(s)	272, 447
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	3
BciT130I	CCWGG	1 cut(s)	202
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	26, 362
BfoI	RGCGCY	1 cut(s)	326
BisI	GCNGC	5 cut(s)	125, 128, 131, 134, 321
BlsI	GCNGC	5 cut(s)	126, 129, 132, 135, 322
Bme1390I	CCNGG	2 cut(s)	103, 202
BmiI	GGNNCC	2 cut(s)	235, 324
BmrFI	CCNGG	2 cut(s)	103, 202
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	428
BmuI	ACTGGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	184
Bpu14I	TTCGAA	2 cut(s)	272, 447
BpuEI	CTTGAG	2 cut(s)	214, 227
BpuMI	CCSGG	1 cut(s)	103
BsaHI	GRCGYC	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bse1I	ACTGG	3 cut(s)	93, 372, 385
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	3 cut(s)	93, 372, 385
BsePI	GCGCGC	2 cut(s)	12, 14
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	4 cut(s)	14, 16, 89, 136
BshNI	GGYRCC	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	102
BsmAI	GTCTC	2 cut(s)	26, 362
BsmBI	CGTCTC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	322
Bso31I	GGTCTC	1 cut(s)	362
Bsp119I	TTCGAA	2 cut(s)	272, 447
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	2 cut(s)	58, 283
BspACI	CCGC	6 cut(s)	125, 128, 134, 136, 159, 320
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	4 cut(s)	14, 16, 89, 136
BspLI	GGNNCC	2 cut(s)	235, 324
BspT104I	TTCGAA	2 cut(s)	272, 447
BspT107I	GGYRCC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	362
BsrI	ACTGG	3 cut(s)	93, 372, 385
BssECI	CCNNGG	1 cut(s)	134
BssHII	GCGCGC	2 cut(s)	12, 14
BssMI	GATC	2 cut(s)	58, 283
BssNI	GRCGYC	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	202
Bst6I	CTCTTC	2 cut(s)	414, 444
BstACI	GRCGYC	1 cut(s)	323
BstBI	TTCGAA	2 cut(s)	272, 447
BstC8I	GCNNGC	2 cut(s)	14, 16
BstDEI	CTNAG	2 cut(s)	366, 489
BstDSI	CCRYGG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	4 cut(s)	14, 16, 89, 136
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	5 cut(s)	14, 16, 18, 91, 325
BstKTI	GATC	2 cut(s)	61, 286
BstMAI	GTCTC	2 cut(s)	26, 362
BstMBI	GATC	2 cut(s)	58, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 133
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	101, 200
BstUI	CGCG	4 cut(s)	14, 16, 89, 136
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	500
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	415
Cac8I	GCNNGC	2 cut(s)	14, 16
CfoI	GCGC	5 cut(s)	14, 16, 18, 91, 325
Cfr42I	CCGCGG	1 cut(s)	137
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	8 cut(s)	41, 72, 133, 198, 205, 236, 455, 488
CviKI_1	RGCY	8 cut(s)	41, 72, 133, 198, 205, 236, 455, 488
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	366, 489
DinI	GGCGCC	1 cut(s)	324
DpnI	GATC	2 cut(s)	60, 285
DpnII	GATC	2 cut(s)	58, 283
Eam1104I	CTCTTC	2 cut(s)	414, 444
EarI	CTCTTC	2 cut(s)	414, 444
Ecl136II	GAGCTC	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	362
Eco53kI	GAGCTC	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	200
EgeI	GGCGCC	1 cut(s)	324
EheI	GGCGCC	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	1 cut(s)	65
FaiI	YATR	2 cut(s)	63, 417
FatI	CATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	5 cut(s)	125, 128, 131, 134, 321
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	5 cut(s)	125, 128, 131, 134, 321
GlaI	GCGC	5 cut(s)	13, 15, 17, 90, 324
GluI	GCNGC	5 cut(s)	125, 128, 131, 134, 321
GsuI	CTGGAG	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	326
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	5 cut(s)	14, 16, 18, 91, 325
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	5 cut(s)	12, 14, 16, 89, 323
HinP1I	GCGC	5 cut(s)	12, 14, 16, 89, 323
HinfI	GANTC	4 cut(s)	31, 119, 260, 356
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	3 cut(s)	46, 346, 355
Hpy188III	TCNNGA	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	223, 268, 336
HpyCH4V	TGCA	1 cut(s)	441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 133
HpyF3I	CTNAG	2 cut(s)	366, 489
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	5 cut(s)	12, 14, 16, 89, 323
KasI	GGCGCC	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	58
KspI	CCGCGG	1 cut(s)	137
Kzo9I	GATC	2 cut(s)	58, 283
LmnI	GCTCC	2 cut(s)	203, 233
LpnPI	CCDG	7 cut(s)	106, 115, 187, 214, 250, 366, 385
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	428
MalI	GATC	2 cut(s)	60, 285
MboI	GATC	2 cut(s)	58, 283
MboII	GAAGA	4 cut(s)	269, 431, 461, 505
MhlI	GDGCHC	1 cut(s)	200
Mly113I	GGCGCC	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	7 cut(s)	61, 132, 219, 370, 445, 477, 507
MseI	TTAA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	103, 202
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	202
MvnI	CGCG	4 cut(s)	14, 16, 89, 136
MwoI	GCNNNNNNNGC	2 cut(s)	130, 133
NarI	GGCGCC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	58, 283
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	2 cut(s)	235, 324
NspV	TTCGAA	2 cut(s)	272, 447
PauI	GCGCGC	2 cut(s)	12, 14
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PctI	GAATGC	1 cut(s)	322
PfeI	GAWTC	3 cut(s)	31, 260, 356
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	5 cut(s)	126, 129, 132, 135, 322
PleI	GAGTC	1 cut(s)	127
PluTI	GGCGCC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	235, 324
PteI	GCGCGC	2 cut(s)	12, 14
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	200
SacII	CCGCGG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	5 cut(s)	125, 128, 131, 134, 321
Sau3AI	GATC	2 cut(s)	58, 283
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	103, 202
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	2 cut(s)	200, 255
SfaNI	GCATC	1 cut(s)	428
SfoI	GGCGCC	1 cut(s)	324
Sfr303I	CCGCGG	1 cut(s)	137
SfuI	TTCGAA	2 cut(s)	272, 447
SgrBI	CCGCGG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	193, 206
SmoI	CTYRAG	2 cut(s)	193, 206
SsiI	CCGC	6 cut(s)	125, 128, 134, 136, 159, 320
SspDI	GGCGCC	1 cut(s)	322
SstI	GAGCTC	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	101, 200
TaqI	TCGA	6 cut(s)	34, 222, 272, 335, 436, 447
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	4 cut(s)	127, 130, 136, 323
TfiI	GAWTC	3 cut(s)	31, 260, 356
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	432
TspGWI	ACGGA	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.