Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003840

Physical Location & Seq

Genomic Coordinates Reverse (-)

9856666 .. 9857181

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1135400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAAACTGAAATTTTACCCCGGCAGCTGGCCACCATTGTTGGCAAAGCAACAACAATTTGAATCTGATGAGCTTATTGTGATCGATGATTCTACTGATGATTGTGCTCTGGCGACTGATAGTTCTATTACTTTGAGTGGTGTCACATCTACTTACAAGTTGCCTGGGAAGATTGCGACGATGTTGTTTCCCCATCAGCGTGATGGCTTAAAGTGGCTATGGTCTTTGCATTGTCAGGGAAAGGGTGGAATCTTAGGTGATGACATGGGCTTGGGAAAAACAATGCAGATTTGTAGCTTTTTAGCAGGATTATTTCATTCACGGTTGACTAAAAGAGTTATGCTTGTGGCCCCTAAAACACTGCTTTCCCATTGGATTAAAGAATTATCATCTGTGGGTCTCACTGATAAGATAAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

141

Amino Acids

15.55

Weight (kDa)

8.45

Isoelectric Point (pI)

26.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	65 - 131	3.7e-19	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63950 AT5G63950
fragaria_vesca	FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690
malus_domestica	MD15G1135400.v1.1 MD15G1135700.v1.1
prunus_persica	Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1
pyrus_communis	pycom01g00590 pycom15g12200 pycom15g12220
rosa_chinensis	RchiOBHm_Chr2g0122191
rosa_laevigata	RLG00000018669
rosa_multiflora	Rmu_co7987670.1_g000001 Rmu_co8056046.1_g000001 Rmu_sc0000805.1_g000001 Rmu_sc0003133.1_g000012 Rmu_sc0004574.1_g000007 Rmu_sc0013150.1_g000001 Rmu_sc0025362.1_g000002
rosa_roxburghii	Rroxscaffold_2G00121780
rosa_rugosa	Rorug02G0237100
rosa_samantha	Rh2AG295600 Rh2BG304600 Rh2CG282900 Rh2DG319500
rosa_wichuraiana	Rw2G023540 Rw2G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	3 cut(s)	27, 73, 297
AluI	AGCT	3 cut(s)	27, 73, 297
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	404
AoxI	GGCC	2 cut(s)	29, 348
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	2 cut(s)	197, 201
BciT130I	CCWGG	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	404
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	21, 165
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	2 cut(s)	21, 165
BpuMI	CCSGG	1 cut(s)	21
Bsa29I	ATCGAT	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	19, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	19, 164
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	36
BshFI	GGCC	2 cut(s)	31, 350
BshVI	ATCGAT	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	31, 350
Bso31I	GGTCTC	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	81
BspANI	GGCC	2 cut(s)	31, 350
BspDI	ATCGAT	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	404
BssECI	CCNNGG	2 cut(s)	19, 164
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	253
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	19, 163
BstV1I	GCAGC	1 cut(s)	36
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	31, 350
BsuTUI	ATCGAT	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	359, 402
Cac8I	GCNNGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	349
ClaI	ATCGAT	1 cut(s)	84
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	8 cut(s)	27, 31, 73, 207, 217, 270, 297, 350
CviKI_1	RGCY	8 cut(s)	27, 31, 73, 207, 217, 270, 297, 350
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	163
FaeI	CATG	1 cut(s)	268
FaiI	YATR	3 cut(s)	220, 266, 341
FatI	CATG	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	31, 350
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	3 cut(s)	62, 89, 249
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	67
Hpy8I	GTNNAC	1 cut(s)	327
Hpy99I	CGWCG	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	229, 286
HpyF3I	CTNAG	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	81
LpnPI	CCDG	7 cut(s)	13, 34, 95, 150, 177, 221, 291
Lsp1109I	GCAGC	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	31
MluCI	AATT	3 cut(s)	11, 56, 383
MluNI	TGGCCA	1 cut(s)	31
Mox20I	TGGCCA	1 cut(s)	31
MscI	TGGCCA	1 cut(s)	31
MseI	TTAA	2 cut(s)	209, 378
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	31
MspA1I	CMGCKG	1 cut(s)	27
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	21, 165
MvaI	CCWGG	1 cut(s)	165
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	142
PfeI	GAWTC	3 cut(s)	62, 89, 249
PkrI	GCNGC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	209, 378
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	21, 165
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	4 cut(s)	29, 75, 259, 299
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	3 cut(s)	11, 56, 383
StyD4I	CCNGG	2 cut(s)	19, 163
TaaI	ACNGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	84
TasI	AATT	3 cut(s)	11, 56, 383
TfiI	GAWTC	3 cut(s)	62, 89, 249
Tru1I	TTAA	2 cut(s)	209, 378
Tru9I	TTAA	2 cut(s)	209, 378
TscAI	CASTG	2 cut(s)	366, 409
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	17, 305
TspRI	CASTG	2 cut(s)	366, 409
XapI	RAATTY	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.