Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025362.1

Orthogroup ID

OG0003840

Physical Location & Seq

Genomic Coordinates Reverse (-)

9432 .. 11214

Gene Structure 1783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025362.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggttgtggctcctaaaactctactttctcattggataaaggaattatcagctgtgggtctctcagacaagataagagaatactatgggacatgtacaaaagctcggaagtatgagcttcagtatgtacttcaggacaaaggcattcttctgactacttatgacattgtgcgagtcaactcaaaatctctaaaagggagtgactatattctcgatgatggaagtgaggatatgatatgggattatatgatacttgatgagggtcatctcataaagaatcccagtacacaaagagccaaaagtttgctagatataccctgttcacatcgcattatagtaagtggcacgccattgcaaaacaatctgaaggagttgtgggccttatttaacttctgttgccctgagctactgggtgataagaactggttcaaggaaagattcgagtcgcgcatttgtcgtggaaatgagaaaaatgcttcagatagggagaagtgtattggttccatggtagcacaggtaatgatatcatctatttttcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

180

Amino Acids

20.65

Weight (kDa)

7.57

Isoelectric Point (pI)

21.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63950 AT5G63950
fragaria_vesca	FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690
malus_domestica	MD15G1135400.v1.1 MD15G1135700.v1.1
prunus_persica	Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1
pyrus_communis	pycom01g00590 pycom15g12200 pycom15g12220
rosa_chinensis	RchiOBHm_Chr2g0122191
rosa_laevigata	RLG00000018669
rosa_multiflora	Rmu_co7987670.1_g000001 Rmu_co8056046.1_g000001 Rmu_sc0000805.1_g000001 Rmu_sc0003133.1_g000012 Rmu_sc0004574.1_g000007 Rmu_sc0013150.1_g000001 Rmu_sc0025362.1_g000002
rosa_roxburghii	Rroxscaffold_2G00121780
rosa_rugosa	Rorug02G0237100
rosa_samantha	Rh2AG295600 Rh2BG304600 Rh2CG282900 Rh2DG319500
rosa_wichuraiana	Rw2G023540 Rw2G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	448
AcuI	CTGAAG	4 cut(s)	104, 116, 386, 462
AfaI	GTAC	3 cut(s)	97, 129, 286
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	430, 539
AluBI	AGCT	4 cut(s)	53, 104, 118, 406
AluI	AGCT	4 cut(s)	53, 104, 118, 406
Alw26I	GTCTC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	425
BccI	CCATC	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	2 cut(s)	12, 502
BmrI	ACTGGG	2 cut(s)	276, 419
BmuI	ACTGGG	2 cut(s)	276, 419
Bpu10I	CCTNAGC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	504
Bse1I	ACTGG	3 cut(s)	282, 414, 428
Bse3DI	GCAATG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	504
BseMI	GCAATG	1 cut(s)	350
BseMII	CTCAG	2 cut(s)	78, 393
BseNI	ACTGG	3 cut(s)	282, 414, 428
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	380
Bso31I	GGTCTC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	95
Bsp19I	CCATGG	1 cut(s)	504
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	77, 394
BspFNI	CGCG	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	12, 502
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	350
BsrGI	TGTACA	1 cut(s)	95
BsrI	ACTGG	3 cut(s)	282, 414, 428
BssECI	CCNNGG	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	504
BstAUI	TGTACA	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	2 cut(s)	64, 402
BstDSI	CCRYGG	1 cut(s)	504
BstFNI	CGCG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	450
BstMAI	GTCTC	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	96
BstUI	CGCG	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	504
BtgZI	GCGATG	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	347
CfoI	GCGC	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	378
Csp6I	GTAC	3 cut(s)	96, 128, 285
CviAII	CATG	2 cut(s)	93, 505
CviJI	RGCY	7 cut(s)	11, 53, 104, 118, 296, 380, 406
CviKI_1	RGCY	7 cut(s)	11, 53, 104, 118, 296, 380, 406
CviQI	GTAC	3 cut(s)	96, 128, 285
DdeI	CTNAG	2 cut(s)	64, 402
Eco130I	CCWWGG	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	525
Eco57I	CTGAAG	4 cut(s)	104, 116, 386, 462
EcoRV	GATATC	1 cut(s)	525
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	2 cut(s)	96, 508
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	2 cut(s)	92, 504
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	2 cut(s)	96, 508
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	4 cut(s)	174, 277, 438, 443
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	3 cut(s)	178, 287, 323
Hpy188I	TCNGA	5 cut(s)	67, 108, 153, 366, 481
Hpy188III	TCNNGA	2 cut(s)	134, 212
Hpy8I	GTNNAC	3 cut(s)	178, 287, 323
HpyAV	CCTTC	1 cut(s)	361
HpyCH4V	TGCA	1 cut(s)	355
HpyF3I	CTNAG	2 cut(s)	64, 402
Hsp92II	CATG	2 cut(s)	96, 508
HspAI	GCGC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	7 cut(s)	119, 295, 331, 395, 409, 414, 500
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	200
MboII	GAAGA	1 cut(s)	140
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	183, 452
MnlI	CCTC	2 cut(s)	220, 253
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	144
MvnI	CGCG	1 cut(s)	448
NcoI	CCATGG	1 cut(s)	504
NlaIII	CATG	2 cut(s)	96, 508
NlaIV	GGNNCC	2 cut(s)	12, 502
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	1 cut(s)	96
PciI	ACATGT	1 cut(s)	92
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	277, 438
PleI	GAGTC	2 cut(s)	182, 451
PpsI	GAGTC	2 cut(s)	182, 451
PscI	ACATGT	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	12, 502
PspPI	GGNCC	1 cut(s)	378
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	3 cut(s)	97, 129, 286
RsaNI	GTAC	3 cut(s)	96, 128, 285
SaqAI	TTAA	1 cut(s)	387
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	2 cut(s)	183, 452
SetI	ASST	5 cut(s)	55, 106, 120, 408, 519
Sse9I	AATT	1 cut(s)	44
SspMI	CTAG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	504
TaqI	TCGA	2 cut(s)	213, 441
TasI	AATT	1 cut(s)	44
TatI	WGTACW	3 cut(s)	95, 127, 284
TfiI	GAWTC	2 cut(s)	277, 438
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
XceI	RCATGY	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.