Rh2DG319500

DNA excision repair protein ERCC-6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003840
Physical Location & Seq
Forward (+)
39782574 .. 39792508
9935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG319500.1

Sequence Viewer

Length: 3132 bp
ATGGCGGAGAGGAAGAGCAGCAAGAAGCCTCAAAGCCTCAACGACAGTCACTATCGCCTCCTCCAAGACCTCAGTTCTGCTCCTCCCAAGCCCTCCGAGCAAGGAAAGGCGACTAAGGTGAGGATTGAAGGCGCGCGCCGTCTCTGTAAGATTCGAGTGGCTTCGGATGATGACAATGATCATGGCGAGCGCTTTAATGACGATGACGCGCCCAGTTTCTCCGGGATTGCTGATTTTGAGTCGCCGCCGCAGCCGCAGAGGAGTGAAGTTGGAAATGGCGGTGGAAATGAGATTAGGGGGATTTTAGATGACTTGAGCTCCAGGCTTGAGTTTTTGTCAATCGAGAGGAAGGGAGCCAGAAAATCTAATAAGGTTGAAGATTCGGGCATTTCGAAGGAAGTTGATGGGGTAAAGAAAGAGAAAGTTGAGTACAAGAATGCGGCGCCTTCGTTTTCGATTGCTTCTGACTTGTCTGATTCCTCTGCAGAGACCAGTAAAACTGGTGGAAAGGGAGTTGAGAGTGTGGTGGATGAATATGAAGAGAAAAGTCATTTTCAATGCAAGTTCGAAGAGGCTGATGATGACAGAGATTGTGTGGTTGTGAGGGCTAAGAAGACGGATAAACAAGTGGGCAGGCGGGGTGGTGGTAGCTATAAAGAGTACTATGATTGTGATGAGGATAACGTGGTTGATGATTCTAGGGATGATTCTGTTCCGGAGGATGATGGTTCTATCACTCTGAGTGGTCTCACATATACTTACAAATTACCTGGGAAGATTGCAAAGATGTTGTTTCCGCATCAGCGCGAAGGCTTGAAGTGGCTATGGGCTCTGCATTGCCAGGGTAAGGGAGGAATCTTAGGAGATGACATGGGTTTGGGTAAAACAATGCAGATTTGTGGCTATTTAGCTGGATTATTTCATTCACGCTTGATTAAAAGGGTAATGGTTGTGGCTCCTAAAACTCTACTTTCTCATTGGATAAAAGAATTATCAGCTGTGGGTCTCTCAGACAAGATAAGAGAATACTATGGGACATGTACAAAAGCTCGGAAGTATGAGCTTCAGTATGTCCTTCAGGACAAAGGCATTCTTCTGACGACTTATGACATTGTGCGAGTCAACTCAAAATCTCTAAAAGGGAGTGACTATATTCTCGATGATGGAAGTGAGGATATGATATGGGATTATATGATACTTGATGAGGGTCATCTCATAAAGAATCCCAGTACACAAAGAGCCAAAAGTTTGCTAGATATACCCTGTTCACATCGCATTATAGTAAGTGGCACGCCATTGCAAAACAATCTGAAGGAGTTGTGGGCCTTATTTAACTTCTGTTGCCCTGAGCTACTGGGTGATAAGAACTGGTTCAAGGAAAGATTCGAGTCACGGATTTGTCGTGGAAATGAGAAAAATGCTTCAGATAGGGAGAAGCGTATTGGTTCCACGGTAGCACAGGAGCTCAGAGACCGTATTCAACCTTTTTTCCTGCGTCGCCTGAAGAATGAGGTGTTTAAGGAGGATAATGACCAAACAAATGCCACACTTTCTAAAAAGAATGAGATCATTGTTTGGCTAAGATTAACCAGCTGTCAGCGGAAACTTTATGAAGCATATTTAAAGAGTGAGCTGGTTCTTTCTGCTTTTGATGGGTCACCATTGGCTGCACTTACGATTCTGAAGAAAATATGTGATCATCCACTTCTATTGACAAAGCGAGCTGCTGAAGATGTACTAGAAGAGTTGGATTCATTGCTTAAGCCAGATGATGCTTGTATGGCAGAAAAACTAGCAATGCATATAGCAGATGTTGCTGAGAAAGAGGAGTTTGATGAGAACCATGCAAATCTCTCTTGCAAAATATCTTTTATAATGTCATTGTTGGATAACTTGATTCCTGAGGGGCATAATGTTCTCATCTTTTCCCAAACTAGAAAGATGCTTAATCTTATTCAGGAAACACTGATATCCAGCGGTTACAAGTTCCAACGCATTGATGGTACCACAAAAGCTACTGAAAGAATTAGGATTGTTAATGATTTCCAAGAAGGTATTGGGGCTCCCATATTTCTCCTGACTTCTCAAGTTGGTGGTTTGGGTCTTACACTTACAAGAGCTGATCGTGTGATAGTGGTTGATCCTGCTTGGAACCCGAGTACTGATAGCCAGAGTGTGGATCGTGCATATCGAATTGGGCAGAATAAGGATGTCATTGTATATAGATTAATGACTTGTGCGACTGTTGAAGAAAAGATATATAGAAAACAGATTTACAAAGGGGGGTTGTTTAGAACTGCAACTGAGCAAAAAGAGCAGATTCGGTACTTTAGTCAACAGGATCTTCGTGAACTTTTCAGTCTCCCACAACAAGGTTTTGATGTTTCCCTTACTCAGAAGCAGCTAAATGAGGAGCATGATCAACAGCACACAATGGAAGAGTCTTTACAAGCCCATATAGAATTCTTGGAAACTCAAGGGATAGCTGGTGTCAGTAACCACAGTTTACTCTTCTCCAAGACAGCACCACCTCTGCCAGAGGTAGACGCGGAGCAGGAGGAAGTTGAAAGGGCTTTGTATTTTCAGTTGATAATATTGGGGCTTTGTCCTTTATCTGGTTGCCTTTATTTTCTGGGCGCAGGATTAGACAAACTTTACTTGCGAGAAGCTCAACTTCAAGTTCGGCACCCGAATGTAATGTCAATGGGTAAGAGCTCTATGAATCATGGTATTTCTCAAATTTGTCAACAGCAACAGTGGTTTATATTATTGCATGCGGTGAAACATCCAGTTTGCATTATTGGCAGGGCTGAATATGCTTTCAAGCCTAAGGATGTAATATTAAATAAGAAGATGCCTTCTTCACCAGCTGATGCAGGAAAAATGACAAAATCAGAGATTAAAGAGAACATCACTAGGCTGTCACAAACTCTTGCAAATAAGGCTTTAGTTTCAAGATTACCTGATAAGGGACAGAAAATACAGAGGCAAATTTCTGAATTGAATGCTGAGCTTCGTAGACTAGAGAAGGACGTAATTGACTTGGATGATGTGACTGAGGAGCTTAAAGGAGTGGTGATAAAAGACCATGATAATGTTGCTGAAGAAGGAAACAAGCATGGAAAAAGTTAG

Protein Analysis

1043

Amino Acids

117.61

Weight (kDa)

6.06

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 264 - 432 9.1e-07 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 267 - 568 7.8e-62 SNF2-related domain
AAA_34 PF13872 283 - 413 7.8e-07 P-loop containing NTP hydrolase pore-1
HDA2-3 PF11496 609 - 751 1.4e-06 Class II histone deacetylase complex subunits 2 and 3
Helicase_C PF00271 624 - 733 5.3e-22 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1874
Acc65I GGTACC 1 cut(s) 2003
AccB1I GGYRCC 3 cut(s) 442, 2003, 2685
AccB7I CCANNNNNTGG 1 cut(s) 2176
AccI GTMKAC 2 cut(s) 2544, 3019
AccII CGCG 5 cut(s) 134, 136, 209, 807, 2549
AccIII TCCGGA 1 cut(s) 715
AclWI GGATC 3 cut(s) 2135, 2187, 2349
AcsI RAATTY 3 cut(s) 2462, 2739, 2991
AcuI CTGAAG 8 cut(s) 1049, 1061, 1331, 1407, 1523, 1703, 1749, 3123
AcyI GRCGYC 1 cut(s) 443
AfaI GTAC 8 cut(s) 431, 662, 1042, 1231, 1737, 2005, 2161, 2327
AfeI AGCGCT 1 cut(s) 191
AfiI CCNNNNNNNGG 5 cut(s) 847, 2176, 2372, 2615, 2969
AflII CTTAAG 1 cut(s) 1760
AflIII ACRYGT 1 cut(s) 1037
AjnI CCWGG 3 cut(s) 320, 769, 840
Alw21I GWGCWC 3 cut(s) 320, 1467, 2717
Alw26I GTCTC 6 cut(s) 146, 482, 752, 1010, 1464, 2366
AlwI GGATC 3 cut(s) 2135, 2187, 2349
Ama87I CYCGRG 1 cut(s) 2155
Aor13HI TCCGGA 1 cut(s) 715
Aor51HI AGCGCT 1 cut(s) 191
AoxI GGCC 1 cut(s) 1323
ApeKI GCWGC 5 cut(s) 18, 250, 1667, 1724, 2401
ApoI RAATTY 3 cut(s) 2462, 2739, 2991
ArsI GACNNNNNNTTYG 2 cut(s) 2684, 2716
AseI ATTAAT 1 cut(s) 2228
Asp700I GAANNNNTTC 1 cut(s) 1370
Asp718I GGTACC 1 cut(s) 2003
AspLEI GCGC 8 cut(s) 134, 136, 138, 192, 211, 445, 807, 2639
AspS9I GGNCC 1 cut(s) 1323
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 6 cut(s) 130, 1370, 1650, 2791, 2856, 3088
AsuII TTCGAA 2 cut(s) 392, 567
AvaI CYCGRG 1 cut(s) 2155
AxyI CCTNAGG 2 cut(s) 1902, 2829
BaeI ACNNNNGTAYC 2 cut(s) 2317, 2350
BanI GGYRCC 3 cut(s) 442, 2003, 2685
BanII GRGCYC 5 cut(s) 320, 832, 1467, 2065, 2717
BarI GAAGNNNNNNTAC 2 cut(s) 2430, 2462
BbsI GAAGAC 1 cut(s) 620
Bbv12I GWGCWC 3 cut(s) 320, 1467, 2717
BbvI GCAGC 5 cut(s) 30, 262, 1654, 1711, 2413
BccI CCATC 5 cut(s) 398, 719, 1157, 1646, 1994
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 3 cut(s) 322, 771, 842
BclI TGATCA 3 cut(s) 178, 1696, 2419
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 6 cut(s) 146, 482, 752, 1010, 1464, 2366
BfaI CTAG 7 cut(s) 699, 1253, 1739, 1793, 1935, 2916, 3023
BfmI CTRYAG 1 cut(s) 483
BfoI RGCGCY 2 cut(s) 193, 446
BfrI CTTAAG 1 cut(s) 1760
BisI GCNGC 9 cut(s) 19, 245, 248, 251, 254, 441, 1668, 1725, 2402
BlpI GCTNAGC 1 cut(s) 3009
BlsI GCNGC 9 cut(s) 20, 246, 249, 252, 255, 442, 1669, 1726, 2403
BmcAI AGTACT 2 cut(s) 662, 2161
Bme1390I CCNGG 4 cut(s) 223, 322, 771, 842
BmeT110I CYCGRG 1 cut(s) 2155
BmgT120I GGNCC 1 cut(s) 1323
BmiI GGNNCC 8 cut(s) 355, 444, 957, 1447, 2005, 2064, 2153, 2687
BmrFI CCNGG 4 cut(s) 223, 322, 771, 842
BmrI ACTGGG 3 cut(s) 207, 1221, 1364
BmsI GCATC 5 cut(s) 808, 1762, 1932, 2844, 2863
BmuI ACTGGG 3 cut(s) 207, 1221, 1364
BpiI GAAGAC 1 cut(s) 620
BpmI CTGGAG 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 1347
Bpu1102I GCTNAGC 1 cut(s) 3009
Bpu14I TTCGAA 2 cut(s) 392, 567
BpuEI CTTGAG 4 cut(s) 334, 347, 2070, 2460
BpuMI CCSGG 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 443
BsaI GGTCTC 4 cut(s) 482, 752, 1010, 1464
BsaJI CCNNGG 3 cut(s) 770, 841, 1449
BsaWI WCCGGW 1 cut(s) 715
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 5 cut(s) 847, 2176, 2372, 2615, 2969
Bse1I ACTGG 7 cut(s) 213, 492, 505, 1227, 1359, 1373, 2789
Bse21I CCTNAGG 2 cut(s) 1902, 2829
Bse3DI GCAATG 4 cut(s) 835, 1295, 1754, 1803
BseAI TCCGGA 1 cut(s) 715
BseBI CCWGG 3 cut(s) 322, 771, 842
BseDI CCNNGG 3 cut(s) 770, 841, 1449
BseGI GGATG 9 cut(s) 172, 535, 709, 727, 1699, 2215, 2785, 2839, 3052
BseLI CCNNNNNNNGG 5 cut(s) 847, 2176, 2372, 2615, 2969
BseMI GCAATG 4 cut(s) 835, 1295, 1754, 1803
BseNI ACTGG 7 cut(s) 213, 492, 505, 1227, 1359, 1373, 2789
BsePI GCGCGC 2 cut(s) 132, 134
BseRI GAGGAG 6 cut(s) 50, 72, 274, 1841, 2426, 3074
BseXI GCAGC 5 cut(s) 30, 262, 1654, 1711, 2413
BsgI GTGCAG 1 cut(s) 1653
Bsh1236I CGCG 5 cut(s) 134, 136, 209, 807, 2549
BshFI GGCC 1 cut(s) 1325
BshNI GGYRCC 3 cut(s) 442, 2003, 2685
BsiHKAI GWGCWC 3 cut(s) 320, 1467, 2717
BsiHKCI CYCGRG 1 cut(s) 2155
BsiSI CCGG 2 cut(s) 222, 716
BslFI GGGAC 2 cut(s) 1048, 2985
BslI CCNNNNNNNGG 5 cut(s) 847, 2176, 2372, 2615, 2969
BsmAI GTCTC 6 cut(s) 146, 482, 752, 1010, 1464, 2366
BsmBI CGTCTC 1 cut(s) 146
BsmFI GGGAC 2 cut(s) 1048, 2985
BsmI GAATGC 3 cut(s) 442, 1089, 3010
BsnI GGCC 1 cut(s) 1325
Bso31I GGTCTC 4 cut(s) 482, 752, 1010, 1464
BsoBI CYCGRG 1 cut(s) 2155
Bsp119I TTCGAA 2 cut(s) 392, 567
Bsp1286I GDGCHC 5 cut(s) 320, 832, 1467, 2065, 2717
Bsp13I TCCGGA 1 cut(s) 715
Bsp1407I TGTACA 1 cut(s) 1040
Bsp143I GATC 8 cut(s) 178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
Bsp1720I GCTNAGC 1 cut(s) 3009
BspANI GGCC 1 cut(s) 1325
BspEI TCCGGA 1 cut(s) 715
BspFNI CGCG 5 cut(s) 134, 136, 209, 807, 2549
BspLI GGNNCC 8 cut(s) 355, 444, 957, 1447, 2005, 2064, 2153, 2687
BspMAI CTGCAG 1 cut(s) 487
BspPI GGATC 3 cut(s) 2135, 2187, 2349
BspQI GCTCTTC 1 cut(s) 8
BspT104I TTCGAA 2 cut(s) 392, 567
BspT107I GGYRCC 3 cut(s) 442, 2003, 2685
BspTI CTTAAG 1 cut(s) 1760
BspTNI GGTCTC 4 cut(s) 482, 752, 1010, 1464
BsrDI GCAATG 4 cut(s) 835, 1295, 1754, 1803
BsrGI TGTACA 1 cut(s) 1040
BsrI ACTGG 7 cut(s) 213, 492, 505, 1227, 1359, 1373, 2789
BssECI CCNNGG 3 cut(s) 770, 841, 1449
BssHII GCGCGC 2 cut(s) 132, 134
BssMI GATC 8 cut(s) 178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
BssNI GRCGYC 1 cut(s) 443
Bst2UI CCWGG 3 cut(s) 322, 771, 842
Bst4CI ACNGT 6 cut(s) 47, 1453, 1475, 2245, 2504, 2757
Bst6I CTCTTC 6 cut(s) 8, 534, 564, 1737, 2433, 2516
BstACI GRCGYC 1 cut(s) 443
BstAFI CTTAAG 1 cut(s) 1760
BstAPI GCANNNNNTGC 1 cut(s) 1814
BstAUI TGTACA 1 cut(s) 1040
BstBI TTCGAA 2 cut(s) 392, 567
BstC8I GCNNGC 7 cut(s) 134, 136, 188, 635, 1292, 1722, 2775
BstDSI CCRYGG 1 cut(s) 1449
BstEII GGTNACC 1 cut(s) 1656
BstF5I GGATG 9 cut(s) 172, 535, 709, 727, 1699, 2215, 2785, 2839, 3052
BstFNI CGCG 5 cut(s) 134, 136, 209, 807, 2549
BstH2I RGCGCY 2 cut(s) 193, 446
BstHHI GCGC 8 cut(s) 134, 136, 138, 192, 211, 445, 807, 2639
BstKTI GATC 8 cut(s) 181, 1569, 1699, 2125, 2143, 2182, 2344, 2422
BstMAI GTCTC 6 cut(s) 146, 482, 752, 1010, 1464, 2366
BstMBI GATC 8 cut(s) 178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
BstMWI GCNNNNNNNGC 9 cut(s) 97, 250, 253, 1781, 1814, 2314, 2802, 2816, 2942
BstNI CCWGG 3 cut(s) 322, 771, 842
BstNSI RCATGY 2 cut(s) 1041, 2777
BstPI GGTNACC 1 cut(s) 1656
BstSCI CCNGG 4 cut(s) 221, 320, 769, 840
BstSFI CTRYAG 1 cut(s) 483
BstUI CGCG 5 cut(s) 134, 136, 209, 807, 2549
BstV1I GCAGC 5 cut(s) 30, 262, 1654, 1711, 2413
BstV2I GAAGAC 1 cut(s) 620
BstX2I RGATCY 1 cut(s) 2341
BstYI RGATCY 1 cut(s) 2341
Bsu36I CCTNAGG 2 cut(s) 1902, 2829
BsuRI GGCC 1 cut(s) 1325
BtgI CCRYGG 1 cut(s) 1449
BtgZI GCGATG 1 cut(s) 1256
BtsCI GGATG 9 cut(s) 172, 535, 709, 727, 1699, 2215, 2785, 2839, 3052
BtsIMutI CAGTG 2 cut(s) 1964, 2762
Cac8I GCNNGC 7 cut(s) 134, 136, 188, 635, 1292, 1722, 2775
CfoI GCGC 8 cut(s) 134, 136, 138, 192, 211, 445, 807, 2639
Cfr13I GGNCC 1 cut(s) 1323
CseI GACGC 3 cut(s) 215, 1484, 2555
Csp6I GTAC 8 cut(s) 430, 661, 1041, 1230, 1736, 2004, 2160, 2326
CspCI CAANNNNNGTGG 2 cut(s) 1692, 1727
CviAII CATG 9 cut(s) 182, 871, 1038, 1844, 2417, 2726, 2774, 3089, 3119
CviQI GTAC 8 cut(s) 430, 661, 1041, 1230, 1736, 2004, 2160, 2326
DinI GGCGCC 1 cut(s) 444
DpnI GATC 8 cut(s) 180, 1568, 1698, 2124, 2142, 2181, 2343, 2421
DpnII GATC 8 cut(s) 178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
DraI TTTAAA 1 cut(s) 1623
Eam1104I CTCTTC 6 cut(s) 8, 534, 564, 1737, 2433, 2516
EarI CTCTTC 6 cut(s) 8, 534, 564, 1737, 2433, 2516
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 3 cut(s) 318, 1465, 2715
Eco24I GRGCYC 5 cut(s) 320, 832, 1467, 2065, 2717
Eco31I GGTCTC 4 cut(s) 482, 752, 1010, 1464
Eco32I GATATC 1 cut(s) 1971
Eco47III AGCGCT 1 cut(s) 191
Eco53kI GAGCTC 3 cut(s) 318, 1465, 2715
Eco57I CTGAAG 8 cut(s) 1049, 1061, 1331, 1407, 1523, 1703, 1749, 3123
Eco81I CCTNAGG 2 cut(s) 1902, 2829
Eco88I CYCGRG 1 cut(s) 2155
Eco91I GGTNACC 1 cut(s) 1656
EcoICRI GAGCTC 3 cut(s) 318, 1465, 2715
EcoO65I GGTNACC 1 cut(s) 1656
EcoRI GAATTC 1 cut(s) 2462
EcoRII CCWGG 3 cut(s) 320, 769, 840
EcoRV GATATC 1 cut(s) 1971
EcoT22I ATGCAT 1 cut(s) 1803
EcoT38I GRGCYC 5 cut(s) 320, 832, 1467, 2065, 2717
EgeI GGCGCC 1 cut(s) 444
EheI GGCGCC 1 cut(s) 444
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 9 cut(s) 185, 874, 1041, 1847, 2420, 2729, 2777, 3092, 3122
FalI AAGNNNNNCTT 4 cut(s) 1077, 1109, 2658, 2690
FaqI GGGAC 2 cut(s) 1048, 2985
FatI CATG 9 cut(s) 181, 870, 1037, 1843, 2416, 2725, 2773, 3088, 3118
FauI CCCGC 1 cut(s) 630
FbaI TGATCA 3 cut(s) 178, 1696, 2419
FblI GTMKAC 2 cut(s) 2544, 3019
Fnu4HI GCNGC 9 cut(s) 19, 245, 248, 251, 254, 441, 1668, 1725, 2402
FokI GGATG 9 cut(s) 179, 542, 716, 734, 1686, 2222, 2772, 2846, 3059
FriOI GRGCYC 5 cut(s) 320, 832, 1467, 2065, 2717
Fsp4HI GCNGC 9 cut(s) 19, 245, 248, 251, 254, 441, 1668, 1725, 2402
FspBI CTAG 7 cut(s) 699, 1253, 1739, 1793, 1935, 2916, 3023
GlaI GCGC 8 cut(s) 133, 135, 137, 191, 210, 444, 806, 2638
GluI GCNGC 9 cut(s) 19, 245, 248, 251, 254, 441, 1668, 1725, 2402
GsuI CTGGAG 1 cut(s) 304
HaeII RGCGCY 2 cut(s) 193, 446
HaeIII GGCC 1 cut(s) 1325
HapII CCGG 2 cut(s) 222, 716
HgaI GACGC 3 cut(s) 215, 1484, 2555
HhaI GCGC 8 cut(s) 134, 136, 138, 192, 211, 445, 807, 2639
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 9 cut(s) 185, 874, 1041, 1847, 2420, 2729, 2777, 3092, 3122
Hin6I GCGC 8 cut(s) 132, 134, 136, 190, 209, 443, 805, 2637
HinP1I GCGC 8 cut(s) 132, 134, 136, 190, 209, 443, 805, 2637
HincII GTYRAC 3 cut(s) 1123, 2336, 2747
HindII GTYRAC 3 cut(s) 1123, 2336, 2747
HpaII CCGG 2 cut(s) 222, 716
HphI GGTGA 6 cut(s) 130, 1370, 1650, 2791, 2856, 3088
Hpy166II GTNNAC 9 cut(s) 1123, 1232, 1268, 2336, 2351, 2507, 2545, 2747, 3020
Hpy188III TCNNGA 9 cut(s) 343, 716, 1079, 1157, 1901, 1958, 2077, 2348, 2955
Hpy8I GTNNAC 9 cut(s) 1123, 1232, 1268, 2336, 2351, 2507, 2545, 2747, 3020
Hpy99I CGWCG 1 cut(s) 1500
HpyCH4III ACNGT 6 cut(s) 47, 1453, 1475, 2245, 2504, 2757
HpyCH4IV ACGT 2 cut(s) 684, 3033
HpyF10VI GCNNNNNNNGC 9 cut(s) 97, 250, 253, 1781, 1814, 2314, 2802, 2816, 2942
HpySE526I ACGT 2 cut(s) 684, 3033
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 9 cut(s) 185, 874, 1041, 1847, 2420, 2729, 2777, 3092, 3122
HspAI GCGC 8 cut(s) 132, 134, 136, 190, 209, 443, 805, 2637
KasI GGCGCC 1 cut(s) 442
Kpn2I TCCGGA 1 cut(s) 715
KpnI GGTACC 1 cut(s) 2007
Ksp22I TGATCA 3 cut(s) 178, 1696, 2419
Kzo9I GATC 8 cut(s) 178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 9 cut(s) 85, 323, 353, 961, 1462, 2068, 2413, 2551, 3061
Lsp1109I GCAGC 5 cut(s) 30, 262, 1654, 1711, 2413
LweI GCATC 5 cut(s) 808, 1762, 1932, 2844, 2863
MaeI CTAG 7 cut(s) 699, 1253, 1739, 1793, 1935, 2916, 3023
MaeII ACGT 2 cut(s) 684, 3033
MaeIII GTNAC 8 cut(s) 47, 1145, 1389, 1656, 1979, 2495, 2922, 3052
MalI GATC 8 cut(s) 180, 1568, 1698, 2124, 2142, 2181, 2343, 2421
MboI GATC 8 cut(s) 178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
MflI RGATCY 1 cut(s) 2341
MhlI GDGCHC 5 cut(s) 320, 832, 1467, 2065, 2717
MluCI AATT 9 cut(s) 764, 989, 2025, 2193, 2462, 2739, 2991, 2999, 3036
Mly113I GGCGCC 1 cut(s) 443
MlyI GAGTC 4 cut(s) 248, 1128, 1397, 2450
MmeI TCCRAC 4 cut(s) 250, 1728, 1866, 2014
Mph1103I ATGCAT 1 cut(s) 1803
MroI TCCGGA 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 1370
MslI CAYNNNNRTG 2 cut(s) 2691, 3093
MspA1I CMGCKG 5 cut(s) 998, 1593, 1600, 1977, 2870
MspCI CTTAAG 1 cut(s) 1760
MspI CCGG 2 cut(s) 222, 716
MspR9I CCNGG 4 cut(s) 223, 322, 771, 842
Mva1269I GAATGC 3 cut(s) 442, 1089, 3010
MvaI CCWGG 3 cut(s) 322, 771, 842
MvnI CGCG 5 cut(s) 134, 136, 209, 807, 2549
MwoI GCNNNNNNNGC 9 cut(s) 97, 250, 253, 1781, 1814, 2314, 2802, 2816, 2942
NarI GGCGCC 1 cut(s) 443
NciI CCSGG 1 cut(s) 223
NdeII GATC 8 cut(s) 178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
NlaIII CATG 9 cut(s) 185, 874, 1041, 1847, 2420, 2729, 2777, 3092, 3122
NlaIV GGNNCC 8 cut(s) 355, 444, 957, 1447, 2005, 2064, 2153, 2687
NmuCI GTSAC 6 cut(s) 47, 1145, 1389, 1656, 2922, 3052
NsiI ATGCAT 1 cut(s) 1803
NspI RCATGY 2 cut(s) 1041, 2777
NspV TTCGAA 2 cut(s) 392, 567
PaeI GCATGC 1 cut(s) 2777
PauI GCGCGC 2 cut(s) 132, 134
PciI ACATGT 1 cut(s) 1037
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 3 cut(s) 389, 1399, 2188
PctI GAATGC 3 cut(s) 442, 1089, 3010
PdmI GAANNNNTTC 1 cut(s) 1370
PflMI CCANNNNNTGG 1 cut(s) 2176
PfoI TCCNGGA 1 cut(s) 221
PkrI GCNGC 9 cut(s) 20, 246, 249, 252, 255, 442, 1669, 1726, 2403
PleI GAGTC 4 cut(s) 247, 1127, 1396, 2449
PluTI GGCGCC 1 cut(s) 446
PpsI GAGTC 4 cut(s) 247, 1127, 1396, 2449
PscI ACATGT 1 cut(s) 1037
PshBI ATTAAT 1 cut(s) 2228
PsiI TTATAA 1 cut(s) 1874
Psp124BI GAGCTC 3 cut(s) 320, 1467, 2717
Psp6I CCWGG 3 cut(s) 320, 769, 840
PspEI GGTNACC 1 cut(s) 1656
PspGI CCWGG 3 cut(s) 320, 769, 840
PspN4I GGNNCC 8 cut(s) 355, 444, 957, 1447, 2005, 2064, 2153, 2687
PspPI GGNCC 1 cut(s) 1323
PstI CTGCAG 1 cut(s) 487
PsuI RGATCY 1 cut(s) 2341
PteI GCGCGC 2 cut(s) 132, 134
PvuII CAGCTG 3 cut(s) 998, 1593, 2870
RsaI GTAC 8 cut(s) 431, 662, 1042, 1231, 1737, 2005, 2161, 2327
RsaNI GTAC 8 cut(s) 430, 661, 1041, 1230, 1736, 2004, 2160, 2326
RseI CAYNNNNRTG 2 cut(s) 2691, 3093
SacI GAGCTC 3 cut(s) 320, 1467, 2717
SapI GCTCTTC 1 cut(s) 8
SatI GCNGC 9 cut(s) 19, 245, 248, 251, 254, 441, 1668, 1725, 2402
Sau3AI GATC 8 cut(s) 178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
Sau96I GGNCC 1 cut(s) 1323
ScaI AGTACT 2 cut(s) 662, 2161
SchI GAGTC 4 cut(s) 248, 1128, 1397, 2450
ScrFI CCNGG 4 cut(s) 223, 322, 771, 842
SduI GDGCHC 5 cut(s) 320, 832, 1467, 2065, 2717
SfaNI GCATC 5 cut(s) 808, 1762, 1932, 2844, 2863
SfcI CTRYAG 1 cut(s) 483
SfoI GGCGCC 1 cut(s) 444
SfuI TTCGAA 2 cut(s) 392, 567
SmiMI CAYNNNNRTG 2 cut(s) 2691, 3093
SmlI CTYRAG 5 cut(s) 313, 326, 1760, 2085, 2475
SmoI CTYRAG 5 cut(s) 313, 326, 1760, 2085, 2475
SphI GCATGC 1 cut(s) 2777
Sse9I AATT 9 cut(s) 764, 989, 2025, 2193, 2462, 2739, 2991, 2999, 3036
SspDI GGCGCC 1 cut(s) 442
SspI AATATT 2 cut(s) 2595, 2841
SspMI CTAG 7 cut(s) 699, 1253, 1739, 1793, 1935, 2916, 3023
SstI GAGCTC 3 cut(s) 320, 1467, 2717
StyD4I CCNGG 4 cut(s) 221, 320, 769, 840
TaaI ACNGT 6 cut(s) 47, 1453, 1475, 2245, 2504, 2757
TaiI ACGT 2 cut(s) 687, 3036
TaqI TCGA 8 cut(s) 154, 342, 392, 455, 567, 1158, 1386, 2191
TasI AATT 9 cut(s) 764, 989, 2025, 2193, 2462, 2739, 2991, 2999, 3036
TatI WGTACW 6 cut(s) 429, 660, 1040, 1229, 1735, 2159
TauI GCSGC 4 cut(s) 247, 250, 256, 443
TscAI CASTG 2 cut(s) 1971, 2762
TseFI GTSAC 6 cut(s) 47, 1145, 1389, 1656, 2922, 3052
TseI GCWGC 5 cut(s) 18, 250, 1667, 1724, 2401
Tsp45I GTSAC 6 cut(s) 47, 1145, 1389, 1656, 2922, 3052
TspDTI ATGAA 6 cut(s) 546, 552, 911, 1626, 1743, 2735
TspGWI ACGGA 2 cut(s) 632, 1408
TspRI CASTG 2 cut(s) 1971, 2762
Van91I CCANNNNNTGG 1 cut(s) 2176
Vha464I CTTAAG 1 cut(s) 1760
VspI ATTAAT 1 cut(s) 2228
XapI RAATTY 3 cut(s) 2462, 2739, 2991
XceI RCATGY 2 cut(s) 1041, 2777
XcmI CCANNNNNNNNNTGG 2 cut(s) 1997, 2054
XmiI GTMKAC 2 cut(s) 2544, 3019
XmnI GAANNNNTTC 1 cut(s) 1370
XspI CTAG 7 cut(s) 699, 1253, 1739, 1793, 1935, 2916, 3023
ZrmI AGTACT 2 cut(s) 662, 2161
Zsp2I ATGCAT 1 cut(s) 1803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.