Rmu_sc0004574.1_g000007

DNA excision repair protein ERCC-6-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004574.1
Physical Location & Seq
Reverse (-)
34120 .. 37066
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004574.1_g000007.1.cds

Sequence Viewer

Length: 1476 bp
atggcggagaggaagagcagcaagaagccccaaagcctcaacgacagtcactatcgtctcctccaagacctcagttctgctcctcccaagccctccgagcaaggaaaggcgactaaggtgaggattgaaggcgcgcgccgtctctgtaagattcgagtggcttccgatgatgacgatgatcatggtgagggctttaatgatgacgacgcgcccagtttctccgggattgctgattttgagtcgccgccgcagccgcggaggagtgaagttggaaatggcggtggaaatgagattagggggattttagatgacttgagctccaggcttgagtttttgtcaatcgagaggaagggagccagaaaatctaataaggttgaagattcggggatttcgaaggaagttgatcgggtaaagaaagagaaagttgattacaagaatgcggcgccttcgttttcgattgcttctgacttgtctgattcctctgctgagaccagtaaaactggtggaaagggagttgagagtgtggtggatgagtatgaagagaaaagtcgttttcgatgcaagttcgaagaggctgatgatgacagagattgtgtggttgtgagggctaagaagacggataaacaagtggggaggcggggtggtggtagctataaagagtactatgattgtgatgaggataacgtggttgatgattctgttccggaggatgatggttctatcactctgagtggtctcacatatacttacaaattacctgggaagattgcaaagatgttgtttccgcatcagcgcgaaggcttgaagtggctatgggctctgcattgccagggtaagggaggaatcttaggagatgacatgggtttgggtaaaacaatgcagatttgtggctatttagccggattatttcattcacgcttgattaaaagggtaatggttgtggctcctaaaactctactttctcattggataaaggaattatcagctgtgggtctctcagacaagataagagaatactatgggacatgtacaaaagctcggaagtatgagcttcagtatgtacttcaggacaaaggcattcttctgactacttatgacattgtgcgagtcaactcaaaatctctaaaagggagtgactatattctcgatgatggaagtgaggatatgatatgggattatatgatacttgatgagggtcatctcataaagaatcccagtacacaaagagccaaaagtttgctagatataccctgttcacatcgcattatagtaagtggcacgccattgcaaaacaatctgaaggagttgtgggccttatttaacttctgttgccctgagctactgggtgataagaactggttcaaggaaagattcgagtcgcgcatttgtcgtggaaatgagaaaaatgcttcagatagggagaagtgtattggttccatggtagcacaggtaatgatatcatctatttttcaataa

Protein Analysis

491

Amino Acids

55.0

Weight (kDa)

6.32

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AccII CGCG 6 cut(s) 134, 136, 209, 256, 795, 1381
AccIII TCCGGA 1 cut(s) 703
AciI CCGC 9 cut(s) 5, 245, 248, 254, 256, 279, 440, 637, 785
AcuI CTGAAG 4 cut(s) 1037, 1049, 1319, 1395
AcyI GRCGYC 1 cut(s) 443
AfaI GTAC 4 cut(s) 662, 1030, 1062, 1219
AfiI CCNNNNNNNGG 1 cut(s) 835
AflIII ACRYGT 1 cut(s) 1025
AgsI TTSAA 5 cut(s) 128, 377, 805, 1363, 1472
AjnI CCWGG 3 cut(s) 320, 757, 828
AluBI AGCT 6 cut(s) 318, 651, 986, 1037, 1051, 1339
AluI AGCT 6 cut(s) 318, 651, 986, 1037, 1051, 1339
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 5 cut(s) 62, 146, 482, 740, 998
Aor13HI TCCGGA 1 cut(s) 703
AoxI GGCC 1 cut(s) 1311
ApeKI GCWGC 2 cut(s) 18, 250
Asp700I GAANNNNTTC 1 cut(s) 1358
AspLEI GCGC 7 cut(s) 134, 136, 138, 211, 445, 795, 1383
AspS9I GGNCC 1 cut(s) 1311
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 3 cut(s) 130, 197, 1358
AsuII TTCGAA 2 cut(s) 392, 567
BanI GGYRCC 1 cut(s) 442
BanII GRGCYC 2 cut(s) 320, 820
BbsI GAAGAC 1 cut(s) 620
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 30, 262
BccI CCATC 2 cut(s) 707, 1145
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 3 cut(s) 322, 759, 830
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 5 cut(s) 62, 146, 482, 740, 998
BfaI CTAG 1 cut(s) 1241
BfoI RGCGCY 1 cut(s) 446
BisI GCNGC 6 cut(s) 19, 245, 248, 251, 254, 441
BlsI GCNGC 6 cut(s) 20, 246, 249, 252, 255, 442
BmcAI AGTACT 1 cut(s) 662
Bme1390I CCNGG 4 cut(s) 223, 322, 759, 830
BmgT120I GGNCC 1 cut(s) 1311
BmiI GGNNCC 4 cut(s) 355, 444, 945, 1435
BmrFI CCNGG 4 cut(s) 223, 322, 759, 830
BmrI ACTGGG 3 cut(s) 207, 1209, 1352
BmsI GCATC 2 cut(s) 548, 796
BmuI ACTGGG 3 cut(s) 207, 1209, 1352
BpiI GAAGAC 1 cut(s) 620
BpmI CTGGAG 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 1335
Bpu14I TTCGAA 2 cut(s) 392, 567
BpuEI CTTGAG 2 cut(s) 334, 347
BpuMI CCSGG 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 443
BsaI GGTCTC 3 cut(s) 482, 740, 998
BsaJI CCNNGG 4 cut(s) 254, 758, 829, 1437
BsaWI WCCGGW 1 cut(s) 703
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 625, 655
Bsc4I CCNNNNNNNGG 1 cut(s) 835
Bse1I ACTGG 6 cut(s) 213, 492, 505, 1215, 1347, 1361
Bse3DI GCAATG 2 cut(s) 823, 1283
BseAI TCCGGA 1 cut(s) 703
BseBI CCWGG 3 cut(s) 322, 759, 830
BseDI CCNNGG 4 cut(s) 254, 758, 829, 1437
BseGI GGATG 2 cut(s) 535, 715
BseLI CCNNNNNNNGG 1 cut(s) 835
BseMI GCAATG 2 cut(s) 823, 1283
BseMII CTCAG 5 cut(s) 85, 477, 719, 1011, 1326
BseNI ACTGG 6 cut(s) 213, 492, 505, 1215, 1347, 1361
BsePI GCGCGC 2 cut(s) 132, 134
BseRI GAGGAG 3 cut(s) 50, 72, 274
BseXI GCAGC 2 cut(s) 30, 262
Bsh1236I CGCG 6 cut(s) 134, 136, 209, 256, 795, 1381
BshFI GGCC 1 cut(s) 1313
BshNI GGYRCC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 3 cut(s) 222, 704, 900
BslFI GGGAC 1 cut(s) 1036
BslI CCNNNNNNNGG 1 cut(s) 835
BsmAI GTCTC 5 cut(s) 62, 146, 482, 740, 998
BsmBI CGTCTC 2 cut(s) 62, 146
BsmFI GGGAC 1 cut(s) 1036
BsmI GAATGC 2 cut(s) 442, 1077
BsnI GGCC 1 cut(s) 1313
Bso31I GGTCTC 3 cut(s) 482, 740, 998
Bsp119I TTCGAA 2 cut(s) 392, 567
Bsp1286I GDGCHC 2 cut(s) 320, 820
Bsp13I TCCGGA 1 cut(s) 703
Bsp1407I TGTACA 1 cut(s) 1028
Bsp143I GATC 2 cut(s) 178, 403
Bsp19I CCATGG 1 cut(s) 1437
BspACI CCGC 9 cut(s) 5, 245, 248, 254, 256, 279, 440, 637, 785
BspANI GGCC 1 cut(s) 1313
BspCNI CTCAG 5 cut(s) 84, 478, 720, 1010, 1327
BspEI TCCGGA 1 cut(s) 703
BspFNI CGCG 6 cut(s) 134, 136, 209, 256, 795, 1381
BspLI GGNNCC 4 cut(s) 355, 444, 945, 1435
BspQI GCTCTTC 1 cut(s) 8
BspT104I TTCGAA 2 cut(s) 392, 567
BspT107I GGYRCC 1 cut(s) 442
BspTNI GGTCTC 3 cut(s) 482, 740, 998
BsrDI GCAATG 2 cut(s) 823, 1283
BsrGI TGTACA 1 cut(s) 1028
BsrI ACTGG 6 cut(s) 213, 492, 505, 1215, 1347, 1361
BssECI CCNNGG 4 cut(s) 254, 758, 829, 1437
BssHII GCGCGC 2 cut(s) 132, 134
BssMI GATC 2 cut(s) 178, 403
BssNI GRCGYC 1 cut(s) 443
BssT1I CCWWGG 1 cut(s) 1437
Bst2UI CCWGG 3 cut(s) 322, 759, 830
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 3 cut(s) 8, 534, 564
BstACI GRCGYC 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 1028
BstBI TTCGAA 2 cut(s) 392, 567
BstC8I GCNNGC 3 cut(s) 134, 136, 1280
BstDEI CTNAG 8 cut(s) 71, 114, 486, 609, 728, 847, 997, 1335
BstDSI CCRYGG 2 cut(s) 254, 1437
BstF5I GGATG 2 cut(s) 535, 715
BstFNI CGCG 6 cut(s) 134, 136, 209, 256, 795, 1381
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 7 cut(s) 134, 136, 138, 211, 445, 795, 1383
BstKTI GATC 2 cut(s) 181, 406
BstMAI GTCTC 5 cut(s) 62, 146, 482, 740, 998
BstMBI GATC 2 cut(s) 178, 403
BstMWI GCNNNNNNNGC 3 cut(s) 97, 250, 253
BstNI CCWGG 3 cut(s) 322, 759, 830
BstNSI RCATGY 1 cut(s) 1029
BstSCI CCNGG 4 cut(s) 221, 320, 757, 828
BstUI CGCG 6 cut(s) 134, 136, 209, 256, 795, 1381
BstV1I GCAGC 2 cut(s) 30, 262
BstV2I GAAGAC 1 cut(s) 620
BsuRI GGCC 1 cut(s) 1313
BtgI CCRYGG 2 cut(s) 254, 1437
BtgZI GCGATG 1 cut(s) 1244
BtsCI GGATG 2 cut(s) 535, 715
Cac8I GCNNGC 3 cut(s) 134, 136, 1280
CfoI GCGC 7 cut(s) 134, 136, 138, 211, 445, 795, 1383
Cfr13I GGNCC 1 cut(s) 1311
Cfr42I CCGCGG 1 cut(s) 257
CseI GACGC 1 cut(s) 215
Csp6I GTAC 4 cut(s) 661, 1029, 1061, 1218
CviAII CATG 4 cut(s) 182, 859, 1026, 1438
CviQI GTAC 4 cut(s) 661, 1029, 1061, 1218
DdeI CTNAG 8 cut(s) 71, 114, 486, 609, 728, 847, 997, 1335
DinI GGCGCC 1 cut(s) 444
DpnI GATC 2 cut(s) 180, 405
DpnII GATC 2 cut(s) 178, 403
Eam1104I CTCTTC 3 cut(s) 8, 534, 564
EarI CTCTTC 3 cut(s) 8, 534, 564
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 1437
Eco24I GRGCYC 2 cut(s) 320, 820
Eco31I GGTCTC 3 cut(s) 482, 740, 998
Eco32I GATATC 1 cut(s) 1458
Eco53kI GAGCTC 1 cut(s) 318
Eco57I CTGAAG 4 cut(s) 1037, 1049, 1319, 1395
EcoICRI GAGCTC 1 cut(s) 318
EcoRII CCWGG 3 cut(s) 320, 757, 828
EcoRV GATATC 1 cut(s) 1458
EcoT14I CCWWGG 1 cut(s) 1437
EcoT38I GRGCYC 2 cut(s) 320, 820
EgeI GGCGCC 1 cut(s) 444
EheI GGCGCC 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 1437
Esp3I CGTCTC 2 cut(s) 62, 146
FaeI CATG 4 cut(s) 185, 862, 1029, 1441
FalI AAGNNNNNCTT 2 cut(s) 1065, 1097
FaqI GGGAC 1 cut(s) 1036
FatI CATG 4 cut(s) 181, 858, 1025, 1437
FauI CCCGC 1 cut(s) 630
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 6 cut(s) 19, 245, 248, 251, 254, 441
FokI GGATG 2 cut(s) 542, 722
FriOI GRGCYC 2 cut(s) 320, 820
Fsp4HI GCNGC 6 cut(s) 19, 245, 248, 251, 254, 441
FspBI CTAG 1 cut(s) 1241
GlaI GCGC 7 cut(s) 133, 135, 137, 210, 444, 794, 1382
GluI GCNGC 6 cut(s) 19, 245, 248, 251, 254, 441
GsuI CTGGAG 1 cut(s) 304
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 1 cut(s) 1313
HapII CCGG 3 cut(s) 222, 704, 900
HgaI GACGC 1 cut(s) 215
HhaI GCGC 7 cut(s) 134, 136, 138, 211, 445, 795, 1383
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 4 cut(s) 185, 862, 1029, 1441
Hin6I GCGC 7 cut(s) 132, 134, 136, 209, 443, 793, 1381
HinP1I GCGC 7 cut(s) 132, 134, 136, 209, 443, 793, 1381
HincII GTYRAC 1 cut(s) 1111
HindII GTYRAC 1 cut(s) 1111
HpaII CCGG 3 cut(s) 222, 704, 900
HphI GGTGA 3 cut(s) 130, 197, 1358
Hpy166II GTNNAC 3 cut(s) 1111, 1220, 1256
Hpy188III TCNNGA 4 cut(s) 343, 704, 1067, 1145
Hpy8I GTNNAC 3 cut(s) 1111, 1220, 1256
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 6 cut(s) 122, 343, 388, 456, 791, 1294
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 684
HpyCH4V TGCA 5 cut(s) 561, 770, 823, 880, 1288
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 250, 253
HpyF3I CTNAG 8 cut(s) 71, 114, 486, 609, 728, 847, 997, 1335
HpySE526I ACGT 1 cut(s) 684
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 4 cut(s) 185, 862, 1029, 1441
HspAI GCGC 7 cut(s) 132, 134, 136, 209, 443, 793, 1381
KasI GGCGCC 1 cut(s) 442
Kpn2I TCCGGA 1 cut(s) 703
Ksp22I TGATCA 1 cut(s) 178
KspI CCGCGG 1 cut(s) 257
Kzo9I GATC 2 cut(s) 178, 403
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 4 cut(s) 85, 323, 353, 949
Lsp1109I GCAGC 2 cut(s) 30, 262
LweI GCATC 2 cut(s) 548, 796
MaeI CTAG 1 cut(s) 1241
MaeII ACGT 1 cut(s) 684
MaeIII GTNAC 2 cut(s) 47, 1133
MalI GATC 2 cut(s) 180, 405
MboI GATC 2 cut(s) 178, 403
MboII GAAGA 7 cut(s) 25, 389, 551, 581, 625, 775, 1073
MhlI GDGCHC 2 cut(s) 320, 820
MluCI AATT 2 cut(s) 752, 977
Mly113I GGCGCC 1 cut(s) 443
MlyI GAGTC 3 cut(s) 248, 1116, 1385
MmeI TCCRAC 1 cut(s) 250
MroI TCCGGA 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 1358
MseI TTAA 3 cut(s) 195, 924, 1320
MspA1I CMGCKG 2 cut(s) 256, 986
MspI CCGG 3 cut(s) 222, 704, 900
MspR9I CCNGG 4 cut(s) 223, 322, 759, 830
Mva1269I GAATGC 2 cut(s) 442, 1077
MvaI CCWGG 3 cut(s) 322, 759, 830
MvnI CGCG 6 cut(s) 134, 136, 209, 256, 795, 1381
MwoI GCNNNNNNNGC 3 cut(s) 97, 250, 253
NarI GGCGCC 1 cut(s) 443
NciI CCSGG 1 cut(s) 223
NcoI CCATGG 1 cut(s) 1437
NdeII GATC 2 cut(s) 178, 403
NlaIII CATG 4 cut(s) 185, 862, 1029, 1441
NlaIV GGNNCC 4 cut(s) 355, 444, 945, 1435
NmuCI GTSAC 2 cut(s) 47, 1133
NspI RCATGY 1 cut(s) 1029
NspV TTCGAA 2 cut(s) 392, 567
PauI GCGCGC 2 cut(s) 132, 134
PciI ACATGT 1 cut(s) 1025
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 389
PctI GAATGC 2 cut(s) 442, 1077
PdmI GAANNNNTTC 1 cut(s) 1358
PfeI GAWTC 7 cut(s) 151, 380, 476, 695, 843, 1210, 1371
PfoI TCCNGGA 1 cut(s) 221
PkrI GCNGC 6 cut(s) 20, 246, 249, 252, 255, 442
PleI GAGTC 3 cut(s) 247, 1115, 1384
PluTI GGCGCC 1 cut(s) 446
PpsI GAGTC 3 cut(s) 247, 1115, 1384
PscI ACATGT 1 cut(s) 1025
Psp124BI GAGCTC 1 cut(s) 320
Psp6I CCWGG 3 cut(s) 320, 757, 828
PspGI CCWGG 3 cut(s) 320, 757, 828
PspN4I GGNNCC 4 cut(s) 355, 444, 945, 1435
PspPI GGNCC 1 cut(s) 1311
PteI GCGCGC 2 cut(s) 132, 134
PvuII CAGCTG 1 cut(s) 986
RsaI GTAC 4 cut(s) 662, 1030, 1062, 1219
RsaNI GTAC 4 cut(s) 661, 1029, 1061, 1218
SacI GAGCTC 1 cut(s) 320
SacII CCGCGG 1 cut(s) 257
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 3 cut(s) 195, 924, 1320
SatI GCNGC 6 cut(s) 19, 245, 248, 251, 254, 441
Sau3AI GATC 2 cut(s) 178, 403
Sau96I GGNCC 1 cut(s) 1311
ScaI AGTACT 1 cut(s) 662
SchI GAGTC 3 cut(s) 248, 1116, 1385
ScrFI CCNGG 4 cut(s) 223, 322, 759, 830
SduI GDGCHC 2 cut(s) 320, 820
SfaNI GCATC 2 cut(s) 548, 796
SfoI GGCGCC 1 cut(s) 444
Sfr303I CCGCGG 1 cut(s) 257
SfuI TTCGAA 2 cut(s) 392, 567
SgrBI CCGCGG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 313, 326
SmoI CTYRAG 2 cut(s) 313, 326
Sse9I AATT 2 cut(s) 752, 977
SsiI CCGC 9 cut(s) 5, 245, 248, 254, 256, 279, 440, 637, 785
SspDI GGCGCC 1 cut(s) 442
SspMI CTAG 1 cut(s) 1241
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 4 cut(s) 221, 320, 757, 828
StyI CCWWGG 1 cut(s) 1437
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 687
TaqI TCGA 8 cut(s) 154, 342, 392, 455, 556, 567, 1146, 1374
TasI AATT 2 cut(s) 752, 977
TatI WGTACW 4 cut(s) 660, 1028, 1060, 1217
TauI GCSGC 4 cut(s) 247, 250, 256, 443
TfiI GAWTC 7 cut(s) 151, 380, 476, 695, 843, 1210, 1371
Tru1I TTAA 3 cut(s) 195, 924, 1320
Tru9I TTAA 3 cut(s) 195, 924, 1320
TseFI GTSAC 2 cut(s) 47, 1133
TseI GCWGC 2 cut(s) 18, 250
Tsp45I GTSAC 2 cut(s) 47, 1133
TspDTI ATGAA 2 cut(s) 552, 899
TspGWI ACGGA 1 cut(s) 632
XceI RCATGY 1 cut(s) 1029
XmnI GAANNNNTTC 1 cut(s) 1358
XspI CTAG 1 cut(s) 1241
ZrmI AGTACT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.