Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003840

Physical Location & Seq

Genomic Coordinates Forward (+)

36522529 .. 36532463

Gene Structure 9935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG295600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2739 bp

ATGGCGGAGAGGAAGAGCAGCAAGAAGCCTCAAAGCCTCAACGACAGTCACTATCGCCTCCTCCAAGACCTCAGTTCTGCTCCTCCCAAGCCCTCCGAGCAAGGAAAGGCGACTAAGGTGAGGATTGAAGGCGCGCGCCGTCTCTGTAAGATTCGAGTGGCTTCGGATGATGACAATGATCATGGCGAGCGCTTTAATGACGATGACGCGCCCAGTTTCTCCGGGATTGCTGATTTTGAGTCGCCGCCGCAGCCGCAGAGGAGTGAAGTTGGAAATGGCGGTGGAAATGAGATTAGGGGGATTTTAGATGACTTGAGCTCCAGGCTTGAGTTTTTGTCAATCGAGAGGAAGGGAGCCAGAAAATCTAATAAGGTTGAAGATTCGGGCATTTCGAAGGAAGTTGATGGGGTAAAGAAAGAGAAAGTTGAGTACAAGAATGCGGCGCCTTCGTTTTCGATTGCTTCTGACTTGTCTGATTCCTCTGCAGAGACCAGTAAAACTGGTGGAAAGGGAGTTGAGAGTGTGGTGGATGAATATGAAGAGAAAAGTCATTTTCAATGCAAGTTCGAAGAGGCTGATGATGACAGAGATTGTGTGGTTGTGAGGGCTAAGAAGACGGATAAACAAGTGGGCAGGCGGGGTGGTGGTAGCTATAAAGAGTACTATGATTGTGATGAGGATAACGTGGTTGATGATTCTAGGGATGATTCTGTTCCGGAGGATGATGGTTCTATCACTCTGAGTGGTCTCACATATACTTACAAATTACCTGGGAAGATTGCAAAGATGTTGTTTCCGCATCAGCGCGAAGGCTTGAAGTGGCTATGGGCTCTGCATTGCCAGGGTAAGGGAGGAATCTTAGGAGATGACATGGGTTTGGGTAAAACAATGCAGATTTGTGGCTATTTAGCTGGATTATTTCATTCACGCTTGATTAAAAGGGTAATGGTTGTGGCTCCTAAAACTCTACTTTCTCATTGGATAAAAGAATTATCAGCTGTGGGTCTCTCAGACAAGATAAGAGAATACTATGGGACATGTACAAAAGCTCGGAAGTATGAGCTTCAGTATGTCCTTCAGGACAAAGGCATTCTTCTGACGACTTATGACATTGTGCGAGTCAACTCAAAATCTCTAAAAGGGAGTGACTATATTCTCGATGATGGAAGTGAGGATATGATATGGGATTATATGATACTTGATGAGGGTCATCTCATAAAGAATCCCAGTACACAAAGAGCCAAAAGTTTGCTAGATATACCCTGTTCACATCGCATTATAGTAAGTGGCACGCCATTGCAAAACAATCTGAAGGAGTTGTGGGCCTTATTTAACTTCTGTTGCCCTGAGCTACTGGGTGATAAGAACTGGTTCAAGGAAAGATTCGAGTCACGGATTTGTCGTGGAAATGAGAAAAATGCTTCAGATAGGGAGAAGCGTATTGGTTCCACGGTAGCACAGGAGCTCAGAGACCGTATTCAACCTTTTTTCCTGCGTCGCCTGAAGAATGAGGTGTTTAAGGAGGATAATGACCAAACAAATGCCACACTTTCTAAAAAGAATGAGATCATTGTTTGGCTAAGATTAACCAGCTGTCAGCGGAAACTTTATGAAGCATATTTAAAGAGTGAGCTGGTTCTTTCTGCTTTTGATGGGTCACCATTGGCTGCACTTACGATTCTGAAGAAAATATGTGATCATCCACTTCTATTGACAAAGCGAGCTGCTGAAGATGTACTAGAAGAGTTGGATTCATTGCTTAAGCCAGATGATGCTTGTATGGCAGAAAAACTAGCAATGCATATAGCAGATGTTGCTGAGAAAGAGGAGTTTGATGAGAACCATGCAAATCTCTCTTGCAAAATATCTTTTATAATGTCATTGTTGGATAACTTGATTCCTGAGGGGCATAATGTTCTCATCTTTTCCCAAACTAGAAAGATGCTTAATCTTATTCAGGAAACACTGATATCCAGCGGTTACAAGTTCCAACGCATTGATGGTACCACAAAAGCTACTGAAAGAATTAGGATTGTTAATGATTTCCAAGAAGGTATTGGGGCTCCCATATTTCTCCTGACTTCTCAAGTTGGTGGTTTGGGTCTTACACTTACAAGAGCTGATCGTGTGATAGTGGTTGATCCTGCTTGGAACCCGAGTACTGATAGCCAGAGTGTGGATCGTGCATATCGAATTGGGCAGAATAAGGATGTCATTGTATATAGATTAATGACTTGTGCGACTGTTGAAGAAAAGATATATAGAAAACAGATTTACAAAGGGGGGTTGTTTAGAACTGCAACTGAGCAAAAAGAGCAGATTCGGTACTTTAGTCAACAGGATCTTCGTGAACTTTTCAGTCTCCCACAACAAGGTTTTGATGTTTCCCTTACTCAGAAGCAGCTAAATGAGGAGCATGATCAACAGCACACAATGGAAGAGTCTTTACAAGCCCATATAGAATTCTTGGAAACTCAAGGGATAGCTGGTGTCAGTAACCACAGTTTACTCTTCTCCAAGACAGCACCACCTCTGCCAGAGGTAGACGCGGAGCAGGAGGAAGTTGAAAGGGCTTTGTATTTTCAGTTGATAATATTGGGGCTTTGTCCTTTATCTGGTTGCCTTTATTTTCTGGGCGCAGGATTAGACAAACTTTACTTGCGAGAAGCTCAACTTCAAGTTCGGCACCCGAATGTAATGTCAATGGGGCTGAATATGCTTTCAAGCCTAAGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000019 GO:0008150 GO:0009893 GO:0010035 GO:0010038 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0042221 GO:0045911 GO:0045935 GO:0045951 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

912

Amino Acids

102.92

Weight (kDa)

5.75

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	264 - 432	7.4e-07	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	267 - 568	6e-62	SNF2-related domain
AAA_34	PF13872	283 - 413	6.4e-07	P-loop containing NTP hydrolase pore-1
HDA2-3	PF11496	609 - 751	1.2e-06	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	624 - 733	4.4e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63950 AT5G63950
fragaria_vesca	FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690 FvH4_1g24690
malus_domestica	MD15G1135400.v1.1 MD15G1135700.v1.1
prunus_persica	Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1 Prupe.4G275700_v2.0.a1
pyrus_communis	pycom01g00590 pycom15g12200 pycom15g12220
rosa_chinensis	RchiOBHm_Chr2g0122191
rosa_laevigata	RLG00000018669
rosa_multiflora	Rmu_co7987670.1_g000001 Rmu_co8056046.1_g000001 Rmu_sc0000805.1_g000001 Rmu_sc0003133.1_g000012 Rmu_sc0004574.1_g000007 Rmu_sc0013150.1_g000001 Rmu_sc0025362.1_g000002
rosa_roxburghii	Rroxscaffold_2G00121780
rosa_rugosa	Rorug02G0237100
rosa_samantha	Rh2AG295600 Rh2BG304600 Rh2CG282900 Rh2DG319500
rosa_wichuraiana	Rw2G023540 Rw2G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1874
Acc65I	GGTACC	1 cut(s)	2003
AccB1I	GGYRCC	3 cut(s)	442, 2003, 2685
AccB7I	CCANNNNNTGG	1 cut(s)	2176
AccI	GTMKAC	1 cut(s)	2544
AccII	CGCG	5 cut(s)	134, 136, 209, 807, 2549
AccIII	TCCGGA	1 cut(s)	715
AclWI	GGATC	3 cut(s)	2135, 2187, 2349
AcsI	RAATTY	1 cut(s)	2462
AcuI	CTGAAG	7 cut(s)	1049, 1061, 1331, 1407, 1523, 1703, 1749
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	8 cut(s)	431, 662, 1042, 1231, 1737, 2005, 2161, 2327
AfeI	AGCGCT	1 cut(s)	191
AfiI	CCNNNNNNNGG	4 cut(s)	847, 2176, 2372, 2615
AflII	CTTAAG	1 cut(s)	1760
AflIII	ACRYGT	1 cut(s)	1037
AjnI	CCWGG	3 cut(s)	320, 769, 840
Alw21I	GWGCWC	2 cut(s)	320, 1467
Alw26I	GTCTC	6 cut(s)	146, 482, 752, 1010, 1464, 2366
AlwI	GGATC	3 cut(s)	2135, 2187, 2349
Ama87I	CYCGRG	1 cut(s)	2155
Aor13HI	TCCGGA	1 cut(s)	715
Aor51HI	AGCGCT	1 cut(s)	191
AoxI	GGCC	1 cut(s)	1323
ApeKI	GCWGC	5 cut(s)	18, 250, 1667, 1724, 2401
ApoI	RAATTY	1 cut(s)	2462
ArsI	GACNNNNNNTTYG	2 cut(s)	2684, 2716
AseI	ATTAAT	1 cut(s)	2228
Asp700I	GAANNNNTTC	1 cut(s)	1370
Asp718I	GGTACC	1 cut(s)	2003
AspLEI	GCGC	8 cut(s)	134, 136, 138, 192, 211, 445, 807, 2639
AspS9I	GGNCC	1 cut(s)	1323
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	3 cut(s)	130, 1370, 1650
AsuII	TTCGAA	2 cut(s)	392, 567
AvaI	CYCGRG	1 cut(s)	2155
AxyI	CCTNAGG	2 cut(s)	1902, 2729
BaeI	ACNNNNGTAYC	2 cut(s)	2317, 2350
BanI	GGYRCC	3 cut(s)	442, 2003, 2685
BanII	GRGCYC	4 cut(s)	320, 832, 1467, 2065
BarI	GAAGNNNNNNTAC	2 cut(s)	2430, 2462
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	2 cut(s)	320, 1467
BbvI	GCAGC	5 cut(s)	30, 262, 1654, 1711, 2413
BccI	CCATC	5 cut(s)	398, 719, 1157, 1646, 1994
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	3 cut(s)	322, 771, 842
BclI	TGATCA	3 cut(s)	178, 1696, 2419
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	6 cut(s)	146, 482, 752, 1010, 1464, 2366
BfaI	CTAG	5 cut(s)	699, 1253, 1739, 1793, 1935
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	2 cut(s)	193, 446
BfrI	CTTAAG	1 cut(s)	1760
BisI	GCNGC	9 cut(s)	19, 245, 248, 251, 254, 441, 1668, 1725, 2402
BlsI	GCNGC	9 cut(s)	20, 246, 249, 252, 255, 442, 1669, 1726, 2403
BmcAI	AGTACT	2 cut(s)	662, 2161
Bme1390I	CCNGG	4 cut(s)	223, 322, 771, 842
BmeT110I	CYCGRG	1 cut(s)	2155
BmgT120I	GGNCC	1 cut(s)	1323
BmiI	GGNNCC	8 cut(s)	355, 444, 957, 1447, 2005, 2064, 2153, 2687
BmrFI	CCNGG	4 cut(s)	223, 322, 771, 842
BmrI	ACTGGG	3 cut(s)	207, 1221, 1364
BmsI	GCATC	3 cut(s)	808, 1762, 1932
BmuI	ACTGGG	3 cut(s)	207, 1221, 1364
BpiI	GAAGAC	1 cut(s)	620
BpmI	CTGGAG	1 cut(s)	304
Bpu10I	CCTNAGC	1 cut(s)	1347
Bpu14I	TTCGAA	2 cut(s)	392, 567
BpuEI	CTTGAG	4 cut(s)	334, 347, 2070, 2460
BpuMI	CCSGG	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	443
BsaI	GGTCTC	4 cut(s)	482, 752, 1010, 1464
BsaJI	CCNNGG	3 cut(s)	770, 841, 1449
BsaWI	WCCGGW	1 cut(s)	715
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	4 cut(s)	847, 2176, 2372, 2615
Bse1I	ACTGG	6 cut(s)	213, 492, 505, 1227, 1359, 1373
Bse21I	CCTNAGG	2 cut(s)	1902, 2729
Bse3DI	GCAATG	4 cut(s)	835, 1295, 1754, 1803
BseAI	TCCGGA	1 cut(s)	715
BseBI	CCWGG	3 cut(s)	322, 771, 842
BseDI	CCNNGG	3 cut(s)	770, 841, 1449
BseGI	GGATG	7 cut(s)	172, 535, 709, 727, 1699, 2215, 2739
BseLI	CCNNNNNNNGG	4 cut(s)	847, 2176, 2372, 2615
BseMI	GCAATG	4 cut(s)	835, 1295, 1754, 1803
BseMII	CTCAG	9 cut(s)	85, 731, 1023, 1338, 1480, 1809, 1893, 2295, 2408
BseNI	ACTGG	6 cut(s)	213, 492, 505, 1227, 1359, 1373
BsePI	GCGCGC	2 cut(s)	132, 134
BseRI	GAGGAG	5 cut(s)	50, 72, 274, 1841, 2426
BseXI	GCAGC	5 cut(s)	30, 262, 1654, 1711, 2413
BsgI	GTGCAG	1 cut(s)	1653
Bsh1236I	CGCG	5 cut(s)	134, 136, 209, 807, 2549
BshFI	GGCC	1 cut(s)	1325
BshNI	GGYRCC	3 cut(s)	442, 2003, 2685
BsiHKAI	GWGCWC	2 cut(s)	320, 1467
BsiHKCI	CYCGRG	1 cut(s)	2155
BsiSI	CCGG	2 cut(s)	222, 716
BslFI	GGGAC	1 cut(s)	1048
BslI	CCNNNNNNNGG	4 cut(s)	847, 2176, 2372, 2615
BsmAI	GTCTC	6 cut(s)	146, 482, 752, 1010, 1464, 2366
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	1048
BsmI	GAATGC	2 cut(s)	442, 1089
BsnI	GGCC	1 cut(s)	1325
Bso31I	GGTCTC	4 cut(s)	482, 752, 1010, 1464
BsoBI	CYCGRG	1 cut(s)	2155
Bsp119I	TTCGAA	2 cut(s)	392, 567
Bsp1286I	GDGCHC	4 cut(s)	320, 832, 1467, 2065
Bsp13I	TCCGGA	1 cut(s)	715
Bsp1407I	TGTACA	1 cut(s)	1040
Bsp143I	GATC	8 cut(s)	178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
BspANI	GGCC	1 cut(s)	1325
BspCNI	CTCAG	9 cut(s)	84, 732, 1022, 1339, 1479, 1810, 1894, 2296, 2407
BspEI	TCCGGA	1 cut(s)	715
BspFNI	CGCG	5 cut(s)	134, 136, 209, 807, 2549
BspLI	GGNNCC	8 cut(s)	355, 444, 957, 1447, 2005, 2064, 2153, 2687
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	3 cut(s)	2135, 2187, 2349
BspQI	GCTCTTC	1 cut(s)	8
BspT104I	TTCGAA	2 cut(s)	392, 567
BspT107I	GGYRCC	3 cut(s)	442, 2003, 2685
BspTI	CTTAAG	1 cut(s)	1760
BspTNI	GGTCTC	4 cut(s)	482, 752, 1010, 1464
BsrDI	GCAATG	4 cut(s)	835, 1295, 1754, 1803
BsrGI	TGTACA	1 cut(s)	1040
BsrI	ACTGG	6 cut(s)	213, 492, 505, 1227, 1359, 1373
BssECI	CCNNGG	3 cut(s)	770, 841, 1449
BssHII	GCGCGC	2 cut(s)	132, 134
BssMI	GATC	8 cut(s)	178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
BssNI	GRCGYC	1 cut(s)	443
Bst2UI	CCWGG	3 cut(s)	322, 771, 842
Bst4CI	ACNGT	5 cut(s)	47, 1453, 1475, 2245, 2504
Bst6I	CTCTTC	6 cut(s)	8, 534, 564, 1737, 2433, 2516
BstACI	GRCGYC	1 cut(s)	443
BstAFI	CTTAAG	1 cut(s)	1760
BstAPI	GCANNNNNTGC	1 cut(s)	1814
BstAUI	TGTACA	1 cut(s)	1040
BstBI	TTCGAA	2 cut(s)	392, 567
BstC8I	GCNNGC	6 cut(s)	134, 136, 188, 635, 1292, 1722
BstDSI	CCRYGG	1 cut(s)	1449
BstEII	GGTNACC	1 cut(s)	1656
BstF5I	GGATG	7 cut(s)	172, 535, 709, 727, 1699, 2215, 2739
BstFNI	CGCG	5 cut(s)	134, 136, 209, 807, 2549
BstH2I	RGCGCY	2 cut(s)	193, 446
BstHHI	GCGC	8 cut(s)	134, 136, 138, 192, 211, 445, 807, 2639
BstKTI	GATC	8 cut(s)	181, 1569, 1699, 2125, 2143, 2182, 2344, 2422
BstMAI	GTCTC	6 cut(s)	146, 482, 752, 1010, 1464, 2366
BstMBI	GATC	8 cut(s)	178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
BstMWI	GCNNNNNNNGC	7 cut(s)	97, 250, 253, 1781, 1814, 2314, 2716
BstNI	CCWGG	3 cut(s)	322, 771, 842
BstNSI	RCATGY	1 cut(s)	1041
BstPI	GGTNACC	1 cut(s)	1656
BstSCI	CCNGG	4 cut(s)	221, 320, 769, 840
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	5 cut(s)	134, 136, 209, 807, 2549
BstV1I	GCAGC	5 cut(s)	30, 262, 1654, 1711, 2413
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	1 cut(s)	2341
BstYI	RGATCY	1 cut(s)	2341
Bsu36I	CCTNAGG	2 cut(s)	1902, 2729
BsuRI	GGCC	1 cut(s)	1325
BtgI	CCRYGG	1 cut(s)	1449
BtgZI	GCGATG	1 cut(s)	1256
BtsCI	GGATG	7 cut(s)	172, 535, 709, 727, 1699, 2215, 2739
BtsIMutI	CAGTG	1 cut(s)	1964
Cac8I	GCNNGC	6 cut(s)	134, 136, 188, 635, 1292, 1722
CfoI	GCGC	8 cut(s)	134, 136, 138, 192, 211, 445, 807, 2639
Cfr13I	GGNCC	1 cut(s)	1323
CseI	GACGC	3 cut(s)	215, 1484, 2555
Csp6I	GTAC	8 cut(s)	430, 661, 1041, 1230, 1736, 2004, 2160, 2326
CspCI	CAANNNNNGTGG	2 cut(s)	1692, 1727
CviAII	CATG	5 cut(s)	182, 871, 1038, 1844, 2417
CviQI	GTAC	8 cut(s)	430, 661, 1041, 1230, 1736, 2004, 2160, 2326
DinI	GGCGCC	1 cut(s)	444
DpnI	GATC	8 cut(s)	180, 1568, 1698, 2124, 2142, 2181, 2343, 2421
DpnII	GATC	8 cut(s)	178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
DraI	TTTAAA	1 cut(s)	1623
Eam1104I	CTCTTC	6 cut(s)	8, 534, 564, 1737, 2433, 2516
EarI	CTCTTC	6 cut(s)	8, 534, 564, 1737, 2433, 2516
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	318, 1465
Eco24I	GRGCYC	4 cut(s)	320, 832, 1467, 2065
Eco31I	GGTCTC	4 cut(s)	482, 752, 1010, 1464
Eco32I	GATATC	1 cut(s)	1971
Eco47III	AGCGCT	1 cut(s)	191
Eco53kI	GAGCTC	2 cut(s)	318, 1465
Eco57I	CTGAAG	7 cut(s)	1049, 1061, 1331, 1407, 1523, 1703, 1749
Eco81I	CCTNAGG	2 cut(s)	1902, 2729
Eco88I	CYCGRG	1 cut(s)	2155
Eco91I	GGTNACC	1 cut(s)	1656
EcoICRI	GAGCTC	2 cut(s)	318, 1465
EcoO65I	GGTNACC	1 cut(s)	1656
EcoRI	GAATTC	1 cut(s)	2462
EcoRII	CCWGG	3 cut(s)	320, 769, 840
EcoRV	GATATC	1 cut(s)	1971
EcoT22I	ATGCAT	1 cut(s)	1803
EcoT38I	GRGCYC	4 cut(s)	320, 832, 1467, 2065
EgeI	GGCGCC	1 cut(s)	444
EheI	GGCGCC	1 cut(s)	444
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	5 cut(s)	185, 874, 1041, 1847, 2420
FalI	AAGNNNNNCTT	4 cut(s)	1077, 1109, 2658, 2690
FaqI	GGGAC	1 cut(s)	1048
FatI	CATG	5 cut(s)	181, 870, 1037, 1843, 2416
FauI	CCCGC	1 cut(s)	630
FbaI	TGATCA	3 cut(s)	178, 1696, 2419
FblI	GTMKAC	1 cut(s)	2544
Fnu4HI	GCNGC	9 cut(s)	19, 245, 248, 251, 254, 441, 1668, 1725, 2402
FokI	GGATG	6 cut(s)	179, 542, 716, 734, 1686, 2222
FriOI	GRGCYC	4 cut(s)	320, 832, 1467, 2065
Fsp4HI	GCNGC	9 cut(s)	19, 245, 248, 251, 254, 441, 1668, 1725, 2402
FspBI	CTAG	5 cut(s)	699, 1253, 1739, 1793, 1935
GlaI	GCGC	8 cut(s)	133, 135, 137, 191, 210, 444, 806, 2638
GluI	GCNGC	9 cut(s)	19, 245, 248, 251, 254, 441, 1668, 1725, 2402
GsuI	CTGGAG	1 cut(s)	304
HaeII	RGCGCY	2 cut(s)	193, 446
HaeIII	GGCC	1 cut(s)	1325
HapII	CCGG	2 cut(s)	222, 716
HgaI	GACGC	3 cut(s)	215, 1484, 2555
HhaI	GCGC	8 cut(s)	134, 136, 138, 192, 211, 445, 807, 2639
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	5 cut(s)	185, 874, 1041, 1847, 2420
Hin6I	GCGC	8 cut(s)	132, 134, 136, 190, 209, 443, 805, 2637
HinP1I	GCGC	8 cut(s)	132, 134, 136, 190, 209, 443, 805, 2637
HincII	GTYRAC	2 cut(s)	1123, 2336
HindII	GTYRAC	2 cut(s)	1123, 2336
HpaII	CCGG	2 cut(s)	222, 716
HphI	GGTGA	3 cut(s)	130, 1370, 1650
Hpy166II	GTNNAC	7 cut(s)	1123, 1232, 1268, 2336, 2351, 2507, 2545
Hpy188III	TCNNGA	8 cut(s)	343, 716, 1079, 1157, 1901, 1958, 2077, 2348
Hpy8I	GTNNAC	7 cut(s)	1123, 1232, 1268, 2336, 2351, 2507, 2545
Hpy99I	CGWCG	1 cut(s)	1500
HpyAV	CCTTC	8 cut(s)	122, 343, 388, 456, 803, 1085, 1306, 2045
HpyCH4III	ACNGT	5 cut(s)	47, 1453, 1475, 2245, 2504
HpyCH4IV	ACGT	1 cut(s)	684
HpyF10VI	GCNNNNNNNGC	7 cut(s)	97, 250, 253, 1781, 1814, 2314, 2716
HpySE526I	ACGT	1 cut(s)	684
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	5 cut(s)	185, 874, 1041, 1847, 2420
HspAI	GCGC	8 cut(s)	132, 134, 136, 190, 209, 443, 805, 2637
KasI	GGCGCC	1 cut(s)	442
Kpn2I	TCCGGA	1 cut(s)	715
KpnI	GGTACC	1 cut(s)	2007
Ksp22I	TGATCA	3 cut(s)	178, 1696, 2419
Kzo9I	GATC	8 cut(s)	178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	8 cut(s)	85, 323, 353, 961, 1462, 2068, 2413, 2551
Lsp1109I	GCAGC	5 cut(s)	30, 262, 1654, 1711, 2413
LweI	GCATC	3 cut(s)	808, 1762, 1932
MaeI	CTAG	5 cut(s)	699, 1253, 1739, 1793, 1935
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	6 cut(s)	47, 1145, 1389, 1656, 1979, 2495
MalI	GATC	8 cut(s)	180, 1568, 1698, 2124, 2142, 2181, 2343, 2421
MboI	GATC	8 cut(s)	178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
MflI	RGATCY	1 cut(s)	2341
MhlI	GDGCHC	4 cut(s)	320, 832, 1467, 2065
MluCI	AATT	5 cut(s)	764, 989, 2025, 2193, 2462
Mly113I	GGCGCC	1 cut(s)	443
MlyI	GAGTC	4 cut(s)	248, 1128, 1397, 2450
MmeI	TCCRAC	4 cut(s)	250, 1728, 1866, 2014
Mph1103I	ATGCAT	1 cut(s)	1803
MroI	TCCGGA	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	1370
MslI	CAYNNNNRTG	1 cut(s)	2691
MspA1I	CMGCKG	4 cut(s)	998, 1593, 1600, 1977
MspCI	CTTAAG	1 cut(s)	1760
MspI	CCGG	2 cut(s)	222, 716
MspR9I	CCNGG	4 cut(s)	223, 322, 771, 842
Mva1269I	GAATGC	2 cut(s)	442, 1089
MvaI	CCWGG	3 cut(s)	322, 771, 842
MvnI	CGCG	5 cut(s)	134, 136, 209, 807, 2549
MwoI	GCNNNNNNNGC	7 cut(s)	97, 250, 253, 1781, 1814, 2314, 2716
NarI	GGCGCC	1 cut(s)	443
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	8 cut(s)	178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
NlaIII	CATG	5 cut(s)	185, 874, 1041, 1847, 2420
NlaIV	GGNNCC	8 cut(s)	355, 444, 957, 1447, 2005, 2064, 2153, 2687
NmuCI	GTSAC	4 cut(s)	47, 1145, 1389, 1656
NsiI	ATGCAT	1 cut(s)	1803
NspI	RCATGY	1 cut(s)	1041
NspV	TTCGAA	2 cut(s)	392, 567
PauI	GCGCGC	2 cut(s)	132, 134
PciI	ACATGT	1 cut(s)	1037
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	3 cut(s)	389, 1399, 2188
PctI	GAATGC	2 cut(s)	442, 1089
PdmI	GAANNNNTTC	1 cut(s)	1370
PflMI	CCANNNNNTGG	1 cut(s)	2176
PfoI	TCCNGGA	1 cut(s)	221
PkrI	GCNGC	9 cut(s)	20, 246, 249, 252, 255, 442, 1669, 1726, 2403
PleI	GAGTC	4 cut(s)	247, 1127, 1396, 2449
PluTI	GGCGCC	1 cut(s)	446
PpsI	GAGTC	4 cut(s)	247, 1127, 1396, 2449
PscI	ACATGT	1 cut(s)	1037
PshBI	ATTAAT	1 cut(s)	2228
PsiI	TTATAA	1 cut(s)	1874
Psp124BI	GAGCTC	2 cut(s)	320, 1467
Psp6I	CCWGG	3 cut(s)	320, 769, 840
PspEI	GGTNACC	1 cut(s)	1656
PspGI	CCWGG	3 cut(s)	320, 769, 840
PspN4I	GGNNCC	8 cut(s)	355, 444, 957, 1447, 2005, 2064, 2153, 2687
PspPI	GGNCC	1 cut(s)	1323
PstI	CTGCAG	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	2341
PteI	GCGCGC	2 cut(s)	132, 134
PvuII	CAGCTG	2 cut(s)	998, 1593
RsaI	GTAC	8 cut(s)	431, 662, 1042, 1231, 1737, 2005, 2161, 2327
RsaNI	GTAC	8 cut(s)	430, 661, 1041, 1230, 1736, 2004, 2160, 2326
RseI	CAYNNNNRTG	1 cut(s)	2691
SacI	GAGCTC	2 cut(s)	320, 1467
SapI	GCTCTTC	1 cut(s)	8
SatI	GCNGC	9 cut(s)	19, 245, 248, 251, 254, 441, 1668, 1725, 2402
Sau3AI	GATC	8 cut(s)	178, 1566, 1696, 2122, 2140, 2179, 2341, 2419
Sau96I	GGNCC	1 cut(s)	1323
ScaI	AGTACT	2 cut(s)	662, 2161
SchI	GAGTC	4 cut(s)	248, 1128, 1397, 2450
ScrFI	CCNGG	4 cut(s)	223, 322, 771, 842
SduI	GDGCHC	4 cut(s)	320, 832, 1467, 2065
SfaNI	GCATC	3 cut(s)	808, 1762, 1932
SfcI	CTRYAG	1 cut(s)	483
SfoI	GGCGCC	1 cut(s)	444
SfuI	TTCGAA	2 cut(s)	392, 567
SmiMI	CAYNNNNRTG	1 cut(s)	2691
SmlI	CTYRAG	5 cut(s)	313, 326, 1760, 2085, 2475
SmoI	CTYRAG	5 cut(s)	313, 326, 1760, 2085, 2475
Sse9I	AATT	5 cut(s)	764, 989, 2025, 2193, 2462
SspDI	GGCGCC	1 cut(s)	442
SspI	AATATT	1 cut(s)	2595
SspMI	CTAG	5 cut(s)	699, 1253, 1739, 1793, 1935
SstI	GAGCTC	2 cut(s)	320, 1467
StyD4I	CCNGG	4 cut(s)	221, 320, 769, 840
TaaI	ACNGT	5 cut(s)	47, 1453, 1475, 2245, 2504
TaiI	ACGT	1 cut(s)	687
TaqI	TCGA	8 cut(s)	154, 342, 392, 455, 567, 1158, 1386, 2191
TasI	AATT	5 cut(s)	764, 989, 2025, 2193, 2462
TatI	WGTACW	6 cut(s)	429, 660, 1040, 1229, 1735, 2159
TauI	GCSGC	4 cut(s)	247, 250, 256, 443
TscAI	CASTG	1 cut(s)	1971
TseFI	GTSAC	4 cut(s)	47, 1145, 1389, 1656
TseI	GCWGC	5 cut(s)	18, 250, 1667, 1724, 2401
Tsp45I	GTSAC	4 cut(s)	47, 1145, 1389, 1656
TspDTI	ATGAA	5 cut(s)	546, 552, 911, 1626, 1743
TspGWI	ACGGA	2 cut(s)	632, 1408
TspRI	CASTG	1 cut(s)	1971
Van91I	CCANNNNNTGG	1 cut(s)	2176
Vha464I	CTTAAG	1 cut(s)	1760
VspI	ATTAAT	1 cut(s)	2228
XapI	RAATTY	1 cut(s)	2462
XceI	RCATGY	1 cut(s)	1041
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1997, 2054
XmiI	GTMKAC	1 cut(s)	2544
XmnI	GAANNNNTTC	1 cut(s)	1370
XspI	CTAG	5 cut(s)	699, 1253, 1739, 1793, 1935
ZrmI	AGTACT	2 cut(s)	662, 2161
Zsp2I	ATGCAT	1 cut(s)	1803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.