Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008976

Physical Location & Seq

Genomic Coordinates Forward (+)

3418345 .. 3421815

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCAAGCCAGCCAATTGCAATGGGCGTCGTCGCCGAAGCTCGGTGCAGAGAAGATTGAAACGTCGTCGTCTTGCTCGAAGCTGGGTTTTGTGAGCTTCAAGAGGAGGGGTTCGTTTGTGGTTAAGGCCATGGCCGTGAATTTGAGTTCAGATAAAAATGGGAGCTTGTTGTCTTCGATTGGAAATTCGACCAATATTCAGTGGCACCAGTGCTTGGTGAAGAAAGAGGACAGGGAGAATTTGCTTAAGCAGAAAGGGTGTGTTATATGGATCACTGGGCTCAGTGGATCAGGGAAGAGCACTGTGGCTTGTGCTTTGAGTGGGAGCTTGTACAGCAGGGGGAAGCTGGTTTATGTTCTAGATGGGGACAATGTGAGGCATGGCTTGAATCGCGACCTTAGTTTTAAAGCAGAAGATCGCGCAGAGAACATAAGGAGGATTGGGGAGGTGGCGAAGCTGTTTGCCGATGCTGGAGTCATTTGTATTGCTAGCGTGATTTCTCCTTATAGAAGGGATCGTGATGCCTGCCGTGCGTTATTGCCTGCTGGAGAGTTTATTGAGGTATTCATGGACATTCCACTCGATGTTTGTGAGGCCAGAGACCCCAAGGGACTCTATAAGCTTGCACGTGCAGGGAAGATCAAAGGTTTTACTGGGATTGATGATCCATATGAGTCTCCACTTAATTGTGAGATAGCGTTAAAGCATAAAGAAGGAGAATGTATGTCCCCATGTGAGATGGCTGAAGAAGTGATTTCTTACTTAGAAGAGAAGGGGTTCCTCCAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004020 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

264

Amino Acids

28.79

Weight (kDa)

8.27

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	85 - 234	3.4e-70	Adenylylsulphate kinase
AAA_33	PF13671	88 - 200	1e-05	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14750
fragaria_vesca	FvH4_2g04460
malus_domestica	MD05G1100600.v1.1 MD10G1105800.v1.1
prunus_persica	Prupe.8G145000_v2.0.a1 Prupe.8G145000_v2.0.a1
pyrus_communis	pycom05g09920 pycom10g09120
rosa_chinensis	RchiOBHm_Chr6g0253831
rosa_laevigata	RLG00000014962
rosa_multiflora	Rmu_co7978700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211480
rosa_rugosa	Rorug05G0548000 Rorug05G0548100 Rorug07G0194700
rosa_samantha	Rh4AG288600 Rh5AG196500 Rh6AG063600 Rh6BG057100 Rh6CG057100 Rh6DG054300
rosa_wichuraiana	Rw6G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AccB7I	CCANNNNNTGG	1 cut(s)	214
AccII	CGCG	2 cut(s)	393, 420
AclWI	GGATC	4 cut(s)	278, 295, 522, 659
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	3 cut(s)	139, 184, 238
AcuI	CTGAAG	1 cut(s)	765
AcvI	CACGTG	1 cut(s)	629
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	41, 214
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	59, 100, 388
AjnI	CCWGG	1 cut(s)	783
AluBI	AGCT	8 cut(s)	40, 82, 96, 165, 327, 346, 457, 622
AluI	AGCT	8 cut(s)	40, 82, 96, 165, 327, 346, 457, 622
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	2 cut(s)	594, 681
AlwI	GGATC	4 cut(s)	278, 295, 522, 659
AoxI	GGCC	3 cut(s)	126, 132, 594
ApoI	RAATTY	3 cut(s)	139, 184, 238
Asp700I	GAANNNNTTC	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	229
AsuNHI	GCTAGC	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	282
BbrPI	CACGTG	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	302
BccI	CCATC	2 cut(s)	356, 733
BceAI	ACGGC	2 cut(s)	119, 513
BciT130I	CCWGG	1 cut(s)	785
BcoDI	GTCTC	2 cut(s)	594, 681
BfaI	CTAG	2 cut(s)	359, 489
BfrI	CTTAAG	1 cut(s)	245
Bme1390I	CCNGG	1 cut(s)	785
BmiI	GGNNCC	2 cut(s)	206, 779
BmrFI	CCNGG	1 cut(s)	785
BmrI	ACTGGG	2 cut(s)	285, 663
BmsI	GCATC	2 cut(s)	457, 511
BmtI	GCTAGC	1 cut(s)	492
BmuI	ACTGGG	2 cut(s)	285, 663
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	3 cut(s)	492, 567, 767
BsaAI	YACGTR	1 cut(s)	629
BsaHI	GRCGYC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	594
BsaJI	CCNNGG	2 cut(s)	129, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 214
Bse1I	ACTGG	3 cut(s)	208, 280, 658
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	785
BseDI	CCNNGG	2 cut(s)	129, 606
BseLI	CCNNNNNNNGG	2 cut(s)	41, 214
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	295
BseNI	ACTGG	3 cut(s)	208, 280, 658
BseRI	GAGGAG	1 cut(s)	118
BseYI	CCCAGC	1 cut(s)	82
BsgI	GTGCAG	2 cut(s)	66, 651
Bsh1236I	CGCG	2 cut(s)	393, 420
BshFI	GGCC	3 cut(s)	128, 134, 596
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	302
BslFI	GGGAC	3 cut(s)	380, 624, 712
BslI	CCNNNNNNNGG	2 cut(s)	41, 214
BsmAI	GTCTC	2 cut(s)	594, 681
BsmFI	GGGAC	3 cut(s)	380, 624, 712
BsnI	GGCC	3 cut(s)	128, 134, 596
Bso31I	GGTCTC	1 cut(s)	594
Bsp1286I	GDGCHC	2 cut(s)	282, 302
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	6 cut(s)	270, 287, 415, 514, 639, 664
Bsp19I	CCATGG	1 cut(s)	129
Bsp68I	TCGCGA	1 cut(s)	393
BspANI	GGCC	3 cut(s)	128, 134, 596
BspCNI	CTCAG	1 cut(s)	294
BspFNI	CGCG	2 cut(s)	393, 420
BspLI	GGNNCC	2 cut(s)	206, 779
BspOI	GCTAGC	1 cut(s)	492
BspPI	GGATC	4 cut(s)	278, 295, 522, 659
BspQI	GCTCTTC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	204
BspTI	CTTAAG	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	594
BsrDI	GCAATG	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	3 cut(s)	208, 280, 658
BssECI	CCNNGG	2 cut(s)	129, 606
BssMI	GATC	6 cut(s)	270, 287, 415, 514, 639, 664
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	2 cut(s)	129, 606
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	290, 762
BstACI	GRCGYC	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	245
BstAUI	TGTACA	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	629
BstC8I	GCNNGC	6 cut(s)	6, 10, 490, 526, 543, 624
BstDEI	CTNAG	3 cut(s)	281, 398, 763
BstDSI	CCRYGG	1 cut(s)	129
BstFNI	CGCG	2 cut(s)	393, 420
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	6 cut(s)	273, 290, 418, 517, 642, 667
BstMAI	GTCTC	2 cut(s)	594, 681
BstMBI	GATC	6 cut(s)	270, 287, 415, 514, 639, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	333, 390, 530
BstNI	CCWGG	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	783
BstUI	CGCG	2 cut(s)	393, 420
BstV2I	GAAGAC	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	128, 134, 596
BtgI	CCRYGG	1 cut(s)	129
BtsIMutI	CAGTG	5 cut(s)	206, 215, 273, 289, 300
BtuMI	TCGCGA	1 cut(s)	393
Cac8I	GCNNGC	6 cut(s)	6, 10, 490, 526, 543, 624
CfoI	GCGC	1 cut(s)	422
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	4 cut(s)	130, 380, 568, 732
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	3 cut(s)	281, 398, 763
DpnI	GATC	6 cut(s)	272, 289, 417, 516, 641, 666
DpnII	GATC	6 cut(s)	270, 287, 415, 514, 639, 664
DraI	TTTAAA	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	290, 762
EarI	CTCTTC	2 cut(s)	290, 762
Eco130I	CCWWGG	2 cut(s)	129, 606
Eco24I	GRGCYC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	765
Eco72I	CACGTG	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	783
EcoT14I	CCWWGG	2 cut(s)	129, 606
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	2 cut(s)	129, 606
FaeI	CATG	4 cut(s)	133, 383, 571, 735
FaqI	GGGAC	3 cut(s)	380, 624, 712
FatI	CATG	4 cut(s)	129, 379, 567, 731
FauNDI	CATATG	1 cut(s)	670
FriOI	GRGCYC	1 cut(s)	282
FspBI	CTAG	2 cut(s)	359, 489
GlaI	GCGC	1 cut(s)	421
GsaI	CCCAGC	1 cut(s)	86
GsuI	CTGGAG	3 cut(s)	492, 567, 767
HaeIII	GGCC	3 cut(s)	128, 134, 596
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	422
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	133, 383, 571, 735
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	4 cut(s)	388, 474, 612, 674
HphI	GGTGA	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	4 cut(s)	100, 359, 392, 518
Hpy99I	CGWCG	4 cut(s)	31, 34, 67, 70
HpyAV	CCTTC	3 cut(s)	504, 707, 766
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	2 cut(s)	62, 628
HpyCH4V	TGCA	5 cut(s)	4, 19, 47, 626, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	333, 390, 530
HpyF3I	CTNAG	3 cut(s)	281, 398, 763
HpySE526I	ACGT	2 cut(s)	62, 628
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	133, 383, 571, 735
HspAI	GCGC	1 cut(s)	420
Kzo9I	GATC	6 cut(s)	270, 287, 415, 514, 639, 664
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	162, 324
LweI	GCATC	2 cut(s)	457, 511
MaeI	CTAG	2 cut(s)	359, 489
MaeII	ACGT	2 cut(s)	62, 628
MalI	GATC	6 cut(s)	272, 289, 417, 516, 641, 666
MboI	GATC	6 cut(s)	270, 287, 415, 514, 639, 664
MboII	GAAGA	8 cut(s)	64, 165, 232, 307, 425, 649, 758, 779
MfeI	CAATTG	1 cut(s)	14
MhlI	GDGCHC	2 cut(s)	282, 302
MluCI	AATT	5 cut(s)	14, 139, 184, 238, 685
MlyI	GAGTC	3 cut(s)	483, 606, 683
MnlI	CCTC	9 cut(s)	96, 99, 220, 369, 429, 439, 553, 586, 791
MroXI	GAANNNNTTC	1 cut(s)	776
MseI	TTAA	6 cut(s)	123, 246, 405, 684, 701, 790
MslI	CAYNNNNRTG	1 cut(s)	134
MspCI	CTTAAG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	785
MunI	CAATTG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	785
MvnI	CGCG	2 cut(s)	393, 420
MwoI	GCNNNNNNNGC	3 cut(s)	333, 390, 530
NcoI	CCATGG	1 cut(s)	129
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	6 cut(s)	270, 287, 415, 514, 639, 664
NheI	GCTAGC	1 cut(s)	488
NlaIII	CATG	4 cut(s)	133, 383, 571, 735
NlaIV	GGNNCC	2 cut(s)	206, 779
NruI	TCGCGA	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	776
PfeI	GAWTC	1 cut(s)	388
PflMI	CCANNNNNTGG	1 cut(s)	214
PleI	GAGTC	3 cut(s)	482, 606, 682
PmaCI	CACGTG	1 cut(s)	629
PmlI	CACGTG	1 cut(s)	629
PpsI	GAGTC	3 cut(s)	482, 606, 682
Ppu21I	YACGTR	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	783
PspCI	CACGTG	1 cut(s)	629
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	2 cut(s)	206, 779
RruI	TCGCGA	1 cut(s)	393
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	6 cut(s)	123, 246, 405, 684, 701, 790
Sau3AI	GATC	6 cut(s)	270, 287, 415, 514, 639, 664
SchI	GAGTC	3 cut(s)	483, 606, 683
ScrFI	CCNGG	1 cut(s)	785
SduI	GDGCHC	2 cut(s)	282, 302
SfaNI	GCATC	2 cut(s)	457, 511
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	5 cut(s)	14, 139, 184, 238, 685
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	2 cut(s)	359, 489
StyD4I	CCNGG	1 cut(s)	783
StyI	CCWWGG	2 cut(s)	129, 606
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	2 cut(s)	65, 631
TaqI	TCGA	4 cut(s)	77, 176, 188, 582
TasI	AATT	5 cut(s)	14, 139, 184, 238, 685
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	6 cut(s)	123, 246, 405, 684, 701, 790
Tru9I	TTAA	6 cut(s)	123, 246, 405, 684, 701, 790
TscAI	CASTG	5 cut(s)	206, 215, 280, 289, 307
TspDTI	ATGAA	1 cut(s)	556
TspRI	CASTG	5 cut(s)	206, 215, 280, 289, 307
Van91I	CCANNNNNTGG	1 cut(s)	214
Vha464I	CTTAAG	1 cut(s)	245
XapI	RAATTY	3 cut(s)	139, 184, 238
XbaI	TCTAGA	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	776
XspI	CTAG	2 cut(s)	359, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.