Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008976

Physical Location & Seq

Genomic Coordinates Reverse (-)

73712062 .. 73713167

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0548000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGACAATGCGGTGGCCGGAGATGTGCGATCGATTCTGTGGTCTCAGTATCAGTAAATACCTTTGTTCTTGTTTCTCTCCCGAGACTGAGATGGAAGAAACACCCCCAAAGAAGGATTGGTTTTTGTACTTGACGATGTCCGACCTTATATGCCGTCTAAATATTGATGAATTCTGCAAAAGAAACTCTGAGAATCCGTTGCTATTTGAATGCTTGTGTGAACTCAAAGATGACGATACTGACGACGATGCTTCTCATCCTGACGGCGATGATTACTATCATCCAAGTAAAATTCCCACTGGACAACATATAAAAATTCCCCTACAAGGAAGACACACACTTGTGGGTTCTAAACTGTACATTGAGGGTTCCGATCATTCTTCTCCTGACTGTGATCTAGTGACTTATTGCTTTGATCCAACTGACCCAGAGGGTCCATCCCTTCGCCAATGCGAGGGTTCCATTCGCGAGGATCTTTGTTACACATTCACCGGCATCGATATCGAGGACAAATCCTATGTTCCGGGGGAAGCTAATGGTTATGGGTATCCATCTCTTACGGTTTTTGGTGAAGATCAATCTTGGAAAGCACTCCCTCATGAGGTTCATGCTGTTGTAGAATTCAAGGGCTTTTTAATTGCCGTACCTATGTTCGGAAAGGGGCTTGTTGCTTATCGGTGGGATTCAAATGGGGTCCCCAAGCTGTATCGGGTACTACATGAGCTTGATGTGATATTCTGCCCTTTATTATTCGCTAATTATTATGCAATGGGTAAATGTGGCGGTGGCCGGATGTGGTTAGTGTATCTTGGAAATGATCTAATGGACTCTCGGTATACGCGTGTAGCAGTGTTTCGAGTTTCCATCTCGAACGACCCTGCTGGCAATCCGGTCCTCTCTGCTGATCTCGAGGCTGCAGAGTTCTATTACTTCCATAATTGCTATGCCATCGAATTAATTTTCGCCTTGTGCCATCAGCCAAACGGCGATGACAAGAAAAAATTGTGCGGGACAATTGTTGATCATCCACGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004020 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

345

Amino Acids

39.15

Weight (kDa)

4.79

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14750
fragaria_vesca	FvH4_2g04460
malus_domestica	MD05G1100600.v1.1 MD10G1105800.v1.1
prunus_persica	Prupe.8G145000_v2.0.a1 Prupe.8G145000_v2.0.a1
pyrus_communis	pycom05g09920 pycom10g09120
rosa_chinensis	RchiOBHm_Chr6g0253831
rosa_laevigata	RLG00000014962
rosa_multiflora	Rmu_co7978700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211480
rosa_rugosa	Rorug05G0548000 Rorug05G0548100 Rorug07G0194700
rosa_samantha	Rh4AG288600 Rh5AG196500 Rh6AG063600 Rh6BG057100 Rh6CG057100 Rh6DG054300
rosa_wichuraiana	Rw6G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	836
AccII	CGCG	2 cut(s)	468, 841
AciI	CCGC	3 cut(s)	10, 783, 1008
AclWI	GGATC	2 cut(s)	410, 480
AcoI	YGGCCR	2 cut(s)	14, 787
AcsI	RAATTY	4 cut(s)	170, 291, 315, 620
AfaI	GTAC	4 cut(s)	128, 359, 645, 714
AfiI	CCNNNNNNNGG	5 cut(s)	112, 326, 454, 601, 653
AflIII	ACRYGT	1 cut(s)	839
AgsI	TTSAA	3 cut(s)	209, 625, 687
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	3 cut(s)	533, 703, 724
AluI	AGCT	3 cut(s)	533, 703, 724
Alw26I	GTCTC	2 cut(s)	47, 77
AlwI	GGATC	2 cut(s)	410, 480
Ama87I	CYCGRG	2 cut(s)	80, 908
AoxI	GGCC	2 cut(s)	14, 787
ApeKI	GCWGC	1 cut(s)	914
ApoI	RAATTY	4 cut(s)	170, 291, 315, 620
AseI	ATTAAT	1 cut(s)	956
AspS9I	GGNCC	3 cut(s)	434, 694, 892
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	2 cut(s)	481, 581
AvaI	CYCGRG	2 cut(s)	80, 908
AvaII	GGWCC	3 cut(s)	434, 694, 892
BbsI	GAAGAC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	901
BccI	CCATC	6 cut(s)	85, 445, 559, 872, 956, 981
BceAI	ACGGC	4 cut(s)	138, 280, 626, 1000
BcgI	CGANNNNNNTGC	2 cut(s)	484, 518
BciVI	GTATCC	1 cut(s)	558
BclI	TGATCA	1 cut(s)	1021
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	47, 77
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	915
BfuI	GTATCC	1 cut(s)	558
BisI	GCNGC	1 cut(s)	915
BlsI	GCNGC	1 cut(s)	916
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	3 cut(s)	434, 694, 892
BmeT110I	CYCGRG	2 cut(s)	80, 908
BmgT120I	GGNCC	3 cut(s)	434, 694, 892
BmiI	GGNNCC	5 cut(s)	370, 435, 460, 695, 696
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	3 cut(s)	238, 504, 1022
BpiI	GAAGAC	1 cut(s)	337
BpuMI	CCSGG	1 cut(s)	525
Bsa29I	ATCGAT	2 cut(s)	31, 498
BsaBI	GATNNNNATC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	524
BsaWI	WCCGGW	1 cut(s)	889
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 326, 454, 601, 653
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	774
Bse8I	GATNNNNATC	1 cut(s)	276
BseCI	ATCGAT	2 cut(s)	31, 498
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	5 cut(s)	256, 280, 437, 798, 1024
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	5 cut(s)	112, 326, 454, 601, 653
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	3 cut(s)	58, 78, 180
BseNI	ACTGG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	901
Bsh1236I	CGCG	2 cut(s)	468, 841
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	16, 789
BshVI	ATCGAT	2 cut(s)	31, 498
BsiEI	CGRYCG	1 cut(s)	31
BsiHKCI	CYCGRG	2 cut(s)	80, 908
BsiSI	CCGG	5 cut(s)	17, 492, 524, 790, 890
BslFI	GGGAC	2 cut(s)	680, 1024
BslI	CCNNNNNNNGG	5 cut(s)	112, 326, 454, 601, 653
BsmAI	GTCTC	2 cut(s)	47, 77
BsmFI	GGGAC	2 cut(s)	680, 1024
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	16, 789
Bso31I	GGTCTC	1 cut(s)	47
BsoBI	CYCGRG	2 cut(s)	80, 908
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	9 cut(s)	28, 373, 394, 415, 472, 574, 817, 904, 1021
Bsp68I	TCGCGA	1 cut(s)	468
BspACI	CCGC	3 cut(s)	10, 783, 1008
BspANI	GGCC	2 cut(s)	16, 789
BspCNI	CTCAG	3 cut(s)	57, 79, 181
BspDI	ATCGAT	2 cut(s)	31, 498
BspFNI	CGCG	2 cut(s)	468, 841
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	5 cut(s)	370, 435, 460, 695, 696
BspMAI	CTGCAG	1 cut(s)	919
BspPI	GGATC	2 cut(s)	410, 480
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	774
BsrFI	RCCGGY	1 cut(s)	491
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	9 cut(s)	28, 373, 394, 415, 472, 574, 817, 904, 1021
BssNAI	GTATAC	1 cut(s)	837
Bst1107I	GTATAC	1 cut(s)	837
Bst4CI	ACNGT	3 cut(s)	357, 392, 562
BstAUI	TGTACA	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	883
BstDEI	CTNAG	3 cut(s)	44, 87, 189
BstF5I	GGATG	5 cut(s)	256, 280, 437, 798, 1024
BstFNI	CGCG	2 cut(s)	468, 841
BstKTI	GATC	9 cut(s)	31, 376, 397, 418, 475, 577, 820, 907, 1024
BstMAI	GTCTC	2 cut(s)	47, 77
BstMBI	GATC	9 cut(s)	28, 373, 394, 415, 472, 574, 817, 904, 1021
BstMCI	CGRYCG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	1 cut(s)	915
BstUI	CGCG	2 cut(s)	468, 841
BstV1I	GCAGC	1 cut(s)	901
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BstZ17I	GTATAC	1 cut(s)	837
Bsu15I	ATCGAT	2 cut(s)	31, 498
BsuI	GTATCC	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	16, 789
BsuTUI	ATCGAT	2 cut(s)	31, 498
BtgZI	GCGATG	2 cut(s)	282, 1002
BtsCI	GGATG	5 cut(s)	256, 280, 437, 798, 1024
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	2 cut(s)	297, 855
BtuMI	TCGCGA	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	883
CciI	TCATGA	1 cut(s)	598
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	3 cut(s)	434, 694, 892
ClaI	ATCGAT	2 cut(s)	31, 498
Csp6I	GTAC	4 cut(s)	127, 358, 644, 713
CviAII	CATG	3 cut(s)	599, 608, 719
CviJI	RGCY	9 cut(s)	16, 533, 630, 664, 703, 724, 789, 914, 979
CviKI_1	RGCY	9 cut(s)	16, 533, 630, 664, 703, 724, 789, 914, 979
CviQI	GTAC	4 cut(s)	127, 358, 644, 713
DdeI	CTNAG	3 cut(s)	44, 87, 189
DpnI	GATC	9 cut(s)	30, 375, 396, 417, 474, 576, 819, 906, 1023
DpnII	GATC	9 cut(s)	28, 373, 394, 415, 472, 574, 817, 904, 1021
EaeI	YGGCCR	2 cut(s)	14, 787
Eco31I	GGTCTC	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	502
Eco47I	GGWCC	3 cut(s)	434, 694, 892
Eco88I	CYCGRG	2 cut(s)	80, 908
EcoO109I	RGGNCCY	1 cut(s)	694
EcoRI	GAATTC	2 cut(s)	170, 620
EcoRV	GATATC	1 cut(s)	502
FaeI	CATG	3 cut(s)	602, 611, 722
FaqI	GGGAC	2 cut(s)	680, 1024
FatI	CATG	3 cut(s)	598, 607, 718
FauI	CCCGC	1 cut(s)	1001
FbaI	TGATCA	1 cut(s)	1021
FblI	GTMKAC	1 cut(s)	836
Fnu4HI	GCNGC	1 cut(s)	915
FokI	GGATG	5 cut(s)	243, 267, 424, 805, 1011
Fsp4HI	GCNGC	1 cut(s)	915
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	1 cut(s)	915
HaeIII	GGCC	2 cut(s)	16, 789
HapII	CCGG	5 cut(s)	17, 492, 524, 790, 890
Hin1II	CATG	3 cut(s)	602, 611, 722
HinfI	GANTC	4 cut(s)	33, 193, 683, 827
HpaII	CCGG	5 cut(s)	17, 492, 524, 790, 890
HphI	GGTGA	2 cut(s)	481, 581
Hpy166II	GTNNAC	2 cut(s)	221, 837
Hpy188I	TCNGA	4 cut(s)	142, 190, 373, 656
Hpy188III	TCNNGA	7 cut(s)	80, 260, 386, 467, 599, 868, 908
Hpy8I	GTNNAC	2 cut(s)	221, 837
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	106, 452
HpyCH4III	ACNGT	3 cut(s)	357, 392, 562
HpyCH4V	TGCA	3 cut(s)	177, 767, 917
HpyF3I	CTNAG	3 cut(s)	44, 87, 189
Hsp92II	CATG	3 cut(s)	602, 611, 722
KflI	GGGWCCC	1 cut(s)	694
Ksp22I	TGATCA	1 cut(s)	1021
Kzo9I	GATC	9 cut(s)	28, 373, 394, 415, 472, 574, 817, 904, 1021
Lsp1109I	GCAGC	1 cut(s)	901
LweI	GCATC	3 cut(s)	238, 504, 1022
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	400, 479
MalI	GATC	9 cut(s)	30, 375, 396, 417, 474, 576, 819, 906, 1023
MboI	GATC	9 cut(s)	28, 373, 394, 415, 472, 574, 817, 904, 1021
MboII	GAAGA	4 cut(s)	107, 342, 372, 584
MfeI	CAATTG	1 cut(s)	1014
MflI	RGATCY	1 cut(s)	472
MluI	ACGCGT	1 cut(s)	839
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	2 cut(s)	165, 443
MnlI	CCTC	9 cut(s)	358, 424, 448, 463, 499, 595, 606, 904, 905
MseI	TTAA	2 cut(s)	635, 956
MslI	CAYNNNNRTG	1 cut(s)	341
MspI	CCGG	5 cut(s)	17, 492, 524, 790, 890
MspR9I	CCNGG	1 cut(s)	525
MunI	CAATTG	1 cut(s)	1014
Mva1269I	GAATGC	1 cut(s)	215
MvnI	CGCG	2 cut(s)	468, 841
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	9 cut(s)	28, 373, 394, 415, 472, 574, 817, 904, 1021
NlaIII	CATG	3 cut(s)	602, 611, 722
NlaIV	GGNNCC	5 cut(s)	370, 435, 460, 695, 696
NmuCI	GTSAC	1 cut(s)	400
NruI	TCGCGA	1 cut(s)	468
OliI	CACNNNNGTG	1 cut(s)	341
PaeR7I	CTCGAG	1 cut(s)	908
PagI	TCATGA	1 cut(s)	598
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 838
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	3 cut(s)	33, 193, 683
PflFI	GACNNNGTC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	916
Ple19I	CGATCG	1 cut(s)	31
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PpuMI	RGGWCCY	1 cut(s)	694
PshBI	ATTAAT	1 cut(s)	956
Psp5II	RGGWCCY	1 cut(s)	694
PspN4I	GGNNCC	5 cut(s)	370, 435, 460, 695, 696
PspPI	GGNCC	3 cut(s)	434, 694, 892
PspPPI	RGGWCCY	1 cut(s)	694
PstI	CTGCAG	1 cut(s)	919
PsuI	RGATCY	1 cut(s)	472
PsyI	GACNNNGTC	1 cut(s)	136
PvuI	CGATCG	1 cut(s)	31
RruI	TCGCGA	1 cut(s)	468
RsaI	GTAC	4 cut(s)	128, 359, 645, 714
RsaNI	GTAC	4 cut(s)	127, 358, 644, 713
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	635, 956
SatI	GCNGC	1 cut(s)	915
Sau3AI	GATC	9 cut(s)	28, 373, 394, 415, 472, 574, 817, 904, 1021
Sau96I	GGNCC	3 cut(s)	434, 694, 892
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	1 cut(s)	525
SetI	ASST	7 cut(s)	63, 147, 535, 606, 649, 705, 726
SfaNI	GCATC	3 cut(s)	238, 504, 1022
SfcI	CTRYAG	1 cut(s)	915
Sfr274I	CTCGAG	1 cut(s)	908
SinI	GGWCC	3 cut(s)	434, 694, 892
SlaI	CTCGAG	1 cut(s)	908
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	908
SmoI	CTYRAG	1 cut(s)	908
SsiI	CCGC	3 cut(s)	10, 783, 1008
SspI	AATATT	1 cut(s)	163
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	523
TaaI	ACNGT	3 cut(s)	357, 392, 562
TaqI	TCGA	7 cut(s)	31, 498, 504, 856, 869, 909, 951
TatI	WGTACW	2 cut(s)	126, 357
TfiI	GAWTC	3 cut(s)	33, 193, 683
Tru1I	TTAA	2 cut(s)	635, 956
Tru9I	TTAA	2 cut(s)	635, 956
TscAI	CASTG	2 cut(s)	304, 855
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	914
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	183, 596
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	2 cut(s)	304, 855
Tth111I	GACNNNGTC	1 cut(s)	136
VpaK11BI	GGWCC	3 cut(s)	434, 694, 892
VspI	ATTAAT	1 cut(s)	956
XapI	RAATTY	4 cut(s)	170, 291, 315, 620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	114
XhoI	CTCGAG	1 cut(s)	908
XmiI	GTMKAC	1 cut(s)	836
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.