Rorug07G0194700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0008976
Physical Location & Seq
Reverse (-)
16609152 .. 16610451
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0194700.1

Sequence Viewer

Length: 840 bp
ATGTTGAAAGCAGTAGGTCTGTTCGGGCGCAGCAGCAACAACAAGAAGAACCCCCGGCCCTTCAAGGACTACTACGCCGAATGGCTGACCACCCTCAAGTCCTCCCTCCTCCCTTCCCTCCGCCAATCCCTCTCCGACGCCTCCTCCCTCTCCCACCTCTCCCTCCACGTCGACGCCCTCCACCGCCACTTCCTCTCCTACTACGACTCCCTCGACTCCGCCGCCCAGTCCGACGTCGCCCAGCTCCTCTTCCCCGACTGGCGCAACCCTCTCGAGAAGCCCTTCCTCTGGCTCGCCGACCTCCACCCCTACCTCTTCACCAACCTCCTCCGCTCCTTCCTCGACTCCGCCTCCGACGAAGATTCCGACGCCGACTCCGACAGCCTCGTCGTCCAGTTAGGCGACCGCCCCTGGCACATCGCCACCGCCTGGCGCAGCCCTTCCAGCTCTCTCACGCAAAAGGTCGAGCAGGTGGAGTGCGGTCTCAGGCTCATGGTCCCTGCGCTGGCGGCGCGTGCGAGGGAGGCGCAGGCCGCGTTCGTGGAGCGCGTGGCGAGGAACTGGGGGCCTTACGACGCCGGGAAGAAGGAGGCGGCGAAGGCGGTGATGGCGGAGGCGATGGAGGCGGAGATGGAGGAGATGGTGAGCGTTCTGGTGGATGCGAATAGGCTGAGGAGGAGTGTTCTTGCCGAGATTGTTGGGGCCGCCAGTGTTTACCAGGCCGCTCTGTTTCTTGAAGGCCTGGCCCAATTTCTCGTTGGGTTCAGAAACCCGGAATTGCTTGCTCAGTTTGATCAGTGCAAGACTCCTCTCAGTAAGCAATGCCGCTTGGCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

31.13

Weight (kDa)

5.9

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 37 - 112 7.3e-20 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 460
AasI GACNNNNNNGTC 1 cut(s) 386
AatII GACGTC 1 cut(s) 237
Acc36I ACCTGC 1 cut(s) 460
AccB7I CCANNNNNTGG 1 cut(s) 429
AccBSI CCGCTC 2 cut(s) 333, 725
AccI GTMKAC 1 cut(s) 171
AccII CGCG 3 cut(s) 514, 536, 549
AcyI GRCGYC 5 cut(s) 138, 174, 234, 369, 576
AfiI CCNNNNNNNGG 3 cut(s) 288, 429, 505
AgsI TTSAA 3 cut(s) 7, 64, 737
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 4 cut(s) 410, 428, 717, 741
AluBI AGCT 2 cut(s) 244, 447
AluI AGCT 2 cut(s) 244, 447
Alw26I GTCTC 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 7 cut(s) 56, 531, 566, 702, 720, 739, 744
ApeKI GCWGC 3 cut(s) 30, 33, 435
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 7 cut(s) 30, 264, 435, 505, 514, 529, 549
AspS9I GGNCC 5 cut(s) 57, 496, 566, 702, 745
AsuC2I CCSGG 3 cut(s) 55, 580, 773
AsuHPI GGTGA 3 cut(s) 310, 616, 655
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 496
BbvCI CCTCAGC 1 cut(s) 671
BbvI GCAGC 3 cut(s) 42, 45, 447
BccI CCATC 4 cut(s) 601, 613, 625, 634
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 4 cut(s) 412, 430, 719, 743
BclI TGATCA 1 cut(s) 793
BcnI CCSGG 3 cut(s) 55, 580, 773
BcoDI GTCTC 1 cut(s) 488
BfuAI ACCTGC 1 cut(s) 460
Bme1390I CCNGG 7 cut(s) 55, 412, 430, 580, 719, 743, 773
Bme18I GGWCC 1 cut(s) 496
BmeT110I CYCGRG 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 5 cut(s) 57, 496, 566, 702, 745
BmiI GGNNCC 3 cut(s) 498, 567, 703
BmrFI CCNGG 7 cut(s) 55, 412, 430, 580, 719, 743, 773
BmrI ACTGGG 2 cut(s) 220, 571
BmsI GCATC 1 cut(s) 649
BmuI ACTGGG 2 cut(s) 220, 571
Bpu10I CCTNAGC 1 cut(s) 671
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 3 cut(s) 55, 580, 773
BsaHI GRCGYC 5 cut(s) 138, 174, 234, 369, 576
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 2 cut(s) 53, 410
Bsc4I CCNNNNNNNGG 3 cut(s) 288, 429, 505
Bse1I ACTGG 5 cut(s) 226, 263, 394, 566, 708
Bse3DI GCAATG 1 cut(s) 827
BseBI CCWGG 4 cut(s) 412, 430, 719, 743
BseDI CCNNGG 2 cut(s) 53, 410
BseGI GGATG 1 cut(s) 664
BseLI CCNNNNNNNGG 3 cut(s) 288, 429, 505
BseMI GCAATG 1 cut(s) 827
BseMII CTCAG 4 cut(s) 499, 662, 800, 826
BseNI ACTGG 5 cut(s) 226, 263, 394, 566, 708
BseRI GAGGAG 8 cut(s) 98, 133, 236, 317, 650, 688, 691, 798
BseXI GCAGC 3 cut(s) 42, 45, 447
BseYI CCCAGC 1 cut(s) 240
Bsh1236I CGCG 3 cut(s) 514, 536, 549
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 7 cut(s) 58, 533, 568, 704, 722, 741, 746
BsiEI CGRYCG 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 3 cut(s) 55, 579, 773
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 3 cut(s) 288, 429, 505
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 7 cut(s) 58, 533, 568, 704, 722, 741, 746
Bso31I GGTCTC 1 cut(s) 488
BsoBI CYCGRG 1 cut(s) 272
Bsp143I GATC 1 cut(s) 793
BspANI GGCC 7 cut(s) 58, 533, 568, 704, 722, 741, 746
BspCNI CTCAG 4 cut(s) 498, 663, 799, 825
BspFNI CGCG 3 cut(s) 514, 536, 549
BspLI GGNNCC 3 cut(s) 498, 567, 703
BspMI ACCTGC 1 cut(s) 460
BspTNI GGTCTC 1 cut(s) 488
BsrBI CCGCTC 2 cut(s) 333, 725
BsrDI GCAATG 1 cut(s) 827
BsrI ACTGG 5 cut(s) 226, 263, 394, 566, 708
BssECI CCNNGG 2 cut(s) 53, 410
BssMI GATC 1 cut(s) 793
BssNI GRCGYC 5 cut(s) 138, 174, 234, 369, 576
Bst2UI CCWGG 4 cut(s) 412, 430, 719, 743
Bst6I CTCTTC 2 cut(s) 254, 320
BstACI GRCGYC 5 cut(s) 138, 174, 234, 369, 576
BstC8I GCNNGC 5 cut(s) 294, 507, 516, 531, 783
BstDEI CTNAG 4 cut(s) 485, 671, 786, 812
BstF5I GGATG 1 cut(s) 664
BstFNI CGCG 3 cut(s) 514, 536, 549
BstHHI GCGC 7 cut(s) 30, 264, 435, 505, 514, 529, 549
BstKTI GATC 1 cut(s) 796
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 1 cut(s) 793
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 9 cut(s) 444, 509, 511, 515, 524, 533, 599, 608, 623
BstNI CCWGG 4 cut(s) 412, 430, 719, 743
BstSCI CCNGG 7 cut(s) 53, 410, 428, 578, 717, 741, 771
BstUI CGCG 3 cut(s) 514, 536, 549
BstV1I GCAGC 3 cut(s) 42, 45, 447
BsuRI GGCC 7 cut(s) 58, 533, 568, 704, 722, 741, 746
BtgZI GCGATG 2 cut(s) 403, 632
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 664
BtsIMutI CAGTG 2 cut(s) 715, 803
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 5 cut(s) 294, 507, 516, 531, 783
CfoI GCGC 7 cut(s) 30, 264, 435, 505, 514, 529, 549
Cfr13I GGNCC 5 cut(s) 57, 496, 566, 702, 745
CseI GACGC 4 cut(s) 146, 182, 377, 584
CviAII CATG 1 cut(s) 493
DdeI CTNAG 4 cut(s) 485, 671, 786, 812
DpnI GATC 1 cut(s) 795
DpnII GATC 1 cut(s) 793
DrdI GACNNNNNNGTC 1 cut(s) 386
DseDI GACNNNNNNGTC 1 cut(s) 386
Eam1104I CTCTTC 2 cut(s) 254, 320
EarI CTCTTC 2 cut(s) 254, 320
EciI GGCGGA 5 cut(s) 110, 208, 337, 626, 641
Eco147I AGGCCT 1 cut(s) 741
Eco31I GGTCTC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 496
Eco88I CYCGRG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 566
EcoRII CCWGG 4 cut(s) 410, 428, 717, 741
FaeI CATG 1 cut(s) 496
FaiI YATR 1 cut(s) 494
FaqI GGGAC 1 cut(s) 482
FatI CATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 793
FblI GTMKAC 1 cut(s) 171
FokI GGATG 1 cut(s) 671
GlaI GCGC 7 cut(s) 29, 263, 434, 504, 513, 528, 548
GsaI CCCAGC 1 cut(s) 244
HaeIII GGCC 7 cut(s) 58, 533, 568, 704, 722, 741, 746
HapII CCGG 3 cut(s) 55, 579, 773
HgaI GACGC 4 cut(s) 146, 182, 377, 584
HhaI GCGC 7 cut(s) 30, 264, 435, 505, 514, 529, 549
Hin1I GRCGYC 5 cut(s) 138, 174, 234, 369, 576
Hin1II CATG 1 cut(s) 496
Hin6I GCGC 7 cut(s) 28, 262, 433, 503, 512, 527, 547
HinP1I GCGC 7 cut(s) 28, 262, 433, 503, 512, 527, 547
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 6 cut(s) 206, 215, 344, 362, 374, 805
HpaII CCGG 3 cut(s) 55, 579, 773
HphI GGTGA 3 cut(s) 310, 616, 655
Hpy166II GTNNAC 2 cut(s) 172, 715
Hpy188I TCNGA 6 cut(s) 136, 232, 355, 367, 379, 767
Hpy188III TCNNGA 3 cut(s) 272, 274, 734
Hpy8I GTNNAC 2 cut(s) 172, 715
Hpy99I CGWCG 9 cut(s) 140, 173, 176, 236, 239, 359, 371, 392, 578
HpyAV CCTTC 8 cut(s) 70, 123, 292, 346, 450, 580, 592, 731
HpyCH4IV ACGT 2 cut(s) 168, 234
HpyCH4V TGCA 1 cut(s) 801
HpyF10VI GCNNNNNNNGC 9 cut(s) 444, 509, 511, 515, 524, 533, 599, 608, 623
HpyF3I CTNAG 4 cut(s) 485, 671, 786, 812
HpySE526I ACGT 2 cut(s) 168, 234
Hsp92I GRCGYC 5 cut(s) 138, 174, 234, 369, 576
Hsp92II CATG 1 cut(s) 496
HspAI GCGC 7 cut(s) 28, 262, 433, 503, 512, 527, 547
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 1 cut(s) 793
LmnI GCTCC 3 cut(s) 249, 338, 544
Lsp1109I GCAGC 3 cut(s) 42, 45, 447
LweI GCATC 1 cut(s) 649
MaeII ACGT 2 cut(s) 168, 234
MalI GATC 1 cut(s) 795
MbiI CCGCTC 2 cut(s) 333, 725
MboI GATC 1 cut(s) 793
MboII GAAGA 5 cut(s) 58, 241, 307, 371, 595
MluCI AATT 2 cut(s) 749, 776
MlyI GAGTC 5 cut(s) 200, 209, 338, 368, 799
MmeI TCCRAC 5 cut(s) 159, 255, 378, 390, 402
MroXI GAANNNNTTC 1 cut(s) 281
MspI CCGG 3 cut(s) 55, 579, 773
MspR9I CCNGG 7 cut(s) 55, 412, 430, 580, 719, 743, 773
MvaI CCWGG 4 cut(s) 412, 430, 719, 743
MvnI CGCG 3 cut(s) 514, 536, 549
MwoI GCNNNNNNNGC 9 cut(s) 444, 509, 511, 515, 524, 533, 599, 608, 623
NciI CCSGG 3 cut(s) 55, 580, 773
NdeII GATC 1 cut(s) 793
NlaIII CATG 1 cut(s) 496
NlaIV GGNNCC 3 cut(s) 498, 567, 703
NmeAIII GCCGAG 1 cut(s) 715
PaeR7I CTCGAG 1 cut(s) 272
PaqCI CACCTGC 1 cut(s) 460
PceI AGGCCT 1 cut(s) 741
PcsI WCGNNNNNNNCGW 4 cut(s) 210, 363, 375, 546
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 429
PleI GAGTC 5 cut(s) 200, 209, 338, 368, 799
PpsI GAGTC 5 cut(s) 200, 209, 338, 368, 799
Psp6I CCWGG 4 cut(s) 410, 428, 717, 741
PspFI CCCAGC 1 cut(s) 240
PspGI CCWGG 4 cut(s) 410, 428, 717, 741
PspN4I GGNNCC 3 cut(s) 498, 567, 703
PspPI GGNCC 5 cut(s) 57, 496, 566, 702, 745
SalI GTCGAC 1 cut(s) 170
Sau3AI GATC 1 cut(s) 793
Sau96I GGNCC 5 cut(s) 57, 496, 566, 702, 745
SchI GAGTC 5 cut(s) 200, 209, 338, 368, 799
ScrFI CCNGG 7 cut(s) 55, 412, 430, 580, 719, 743, 773
SfaNI GCATC 1 cut(s) 649
Sfr274I CTCGAG 1 cut(s) 272
SgrDI CGTCGACG 1 cut(s) 170
SinI GGWCC 1 cut(s) 496
SlaI CTCGAG 1 cut(s) 272
SmlI CTYRAG 2 cut(s) 95, 272
SmoI CTYRAG 2 cut(s) 95, 272
Sse9I AATT 2 cut(s) 749, 776
SseBI AGGCCT 1 cut(s) 741
StuI AGGCCT 1 cut(s) 741
StyD4I CCNGG 7 cut(s) 53, 410, 428, 578, 717, 741, 771
TaiI ACGT 2 cut(s) 171, 237
TaqI TCGA 5 cut(s) 171, 213, 273, 342, 465
TasI AATT 2 cut(s) 749, 776
TauI GCSGC 7 cut(s) 224, 512, 536, 596, 707, 725, 828
TfiI GAWTC 1 cut(s) 362
TscAI CASTG 2 cut(s) 715, 803
TseI GCWGC 3 cut(s) 30, 33, 435
TspRI CASTG 2 cut(s) 715, 803
Van91I CCANNNNNTGG 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 755
XhoI CTCGAG 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 281
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.