Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008976

Physical Location & Seq

Genomic Coordinates Reverse (-)

61917273 .. 61920705

Gene Structure 3433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00211480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAATGCCAGCCGGTTGCAATGGGCATCCTCCTCGCCTGCGCTGAGCACAGGGCTCGAAACGTCGTCGTCTTGTTCGAAGCTGGGTTTTGTGAACTTTCGCGGCGCCGGTTGTGGAGATAGCTTGAAGACGAAGAAGGGTTTGTTTGTGATAAAGGCGATGGATGTGGAGGGTTCGAGAACCGTGAATTTGAATGGGCACGCTGGGGATTCAGATAAAAATGGGAGCTTGTTGTCTTCGATTGGAAATTCGACCAACATTCAGTGGCACCAGTGCTCGGTGAAGAAAGAAGATAGGGAGAATATGCTGAAACAAAAAGGGTGTGTTATATGGATCACTGGGCTTAGTGGATCAGGGAAGAGCACTGTGGCTTGTGCTTTGAGTGGGATCTTGTACCGCAGGGGAAAGCTGGCTTATGTTCTAGATGGGGACAATGTCAGGCATGGCTTGAATCGTGACCTTGGTTTTAAAGCAGAAGACCGTGCAGAGAATATAAGGAGGATTGGGGAGGTGGCGAAGCTGTTTGCCGATGCTGGAGTCATTTGTATTGCTAGCTTGATTTCTCCGTATAGAAGGGATCGTGATGCCTGTCGTGCATTGTTGCCTGCTGGAGAGTTTATTGAGGTGTTCATGGACATTCCACTCCATGTTTGTGAGGCCAGAGACCCCAAGGGGCTATATAAGCTTGCACGTGCAGGGAAGATCAAAGGTTTCACTGGAATTGATGATCCATATGAGTCGCCACTAAATTGTGAGATAGCATTAAGGCATACAGGAGGAGAATGTGCGTCCCCATGCGAGATGGCTGAAGAAGTGATTTCTTACTTAGAAGAGAAGGGGTTCCTCCAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004020 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

284

Amino Acids

30.7

Weight (kDa)

8.25

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	106 - 255	2.8e-70	Adenylylsulphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14750
fragaria_vesca	FvH4_2g04460
malus_domestica	MD05G1100600.v1.1 MD10G1105800.v1.1
prunus_persica	Prupe.8G145000_v2.0.a1 Prupe.8G145000_v2.0.a1
pyrus_communis	pycom05g09920 pycom10g09120
rosa_chinensis	RchiOBHm_Chr6g0253831
rosa_laevigata	RLG00000014962
rosa_multiflora	Rmu_co7978700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211480
rosa_rugosa	Rorug05G0548000 Rorug05G0548100 Rorug07G0194700
rosa_samantha	Rh4AG288600 Rh5AG196500 Rh6AG063600 Rh6BG057100 Rh6CG057100 Rh6DG054300
rosa_wichuraiana	Rw6G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	104, 267
AccII	CGCG	1 cut(s)	102
AciI	CCGC	2 cut(s)	102, 397
AclWI	GGATC	5 cut(s)	341, 358, 395, 585, 722
AcsI	RAATTY	2 cut(s)	187, 247
AcuI	CTGAAG	1 cut(s)	828
AcvI	CACGTG	1 cut(s)	692
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	127, 193, 451
AjnI	CCWGG	1 cut(s)	846
AluBI	AGCT	7 cut(s)	82, 123, 228, 409, 520, 555, 685
AluI	AGCT	7 cut(s)	82, 123, 228, 409, 520, 555, 685
Alw21I	GWGCWC	3 cut(s)	50, 278, 365
Alw26I	GTCTC	1 cut(s)	657
AlwI	GGATC	5 cut(s)	341, 358, 395, 585, 722
AoxI	GGCC	1 cut(s)	657
ApoI	RAATTY	2 cut(s)	187, 247
Asp700I	GAANNNNTTC	1 cut(s)	839
AspLEI	GCGC	2 cut(s)	43, 107
AsuHPI	GGTGA	1 cut(s)	292
AsuII	TTCGAA	1 cut(s)	77
AsuNHI	GCTAGC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	201
BanI	GGYRCC	2 cut(s)	104, 267
BanII	GRGCYC	1 cut(s)	57
BbrPI	CACGTG	1 cut(s)	692
BbsI	GAAGAC	3 cut(s)	134, 228, 483
Bbv12I	GWGCWC	3 cut(s)	50, 278, 365
BccI	CCATC	3 cut(s)	154, 419, 796
BcgI	CGANNNNNNTGC	4 cut(s)	15, 37, 49, 71
BciT130I	CCWGG	1 cut(s)	848
BcoDI	GTCTC	1 cut(s)	657
BfaI	CTAG	2 cut(s)	422, 552
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	1 cut(s)	103
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	1 cut(s)	848
BmiI	GGNNCC	3 cut(s)	106, 269, 842
BmrFI	CCNGG	1 cut(s)	848
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	3 cut(s)	35, 520, 574
BmtI	GCTAGC	1 cut(s)	555
BmuI	ACTGGG	1 cut(s)	348
BpiI	GAAGAC	3 cut(s)	134, 228, 483
BpmI	CTGGAG	3 cut(s)	555, 630, 830
Bpu1102I	GCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	692
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	657
BsaJI	CCNNGG	2 cut(s)	460, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse118I	RCCGGY	2 cut(s)	12, 107
Bse1I	ACTGG	3 cut(s)	271, 343, 721
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	848
BseDI	CCNNGG	2 cut(s)	460, 669
BseGI	GGATG	2 cut(s)	26, 169
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	3 cut(s)	271, 343, 721
BseRI	GAGGAG	2 cut(s)	22, 792
BseSI	GKGCMC	1 cut(s)	201
BseYI	CCCAGC	2 cut(s)	82, 203
BsgI	GTGCAG	2 cut(s)	504, 714
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	659
BshNI	GGYRCC	2 cut(s)	104, 267
BsiHKAI	GWGCWC	3 cut(s)	50, 278, 365
BsiSI	CCGG	2 cut(s)	13, 108
BslFI	GGGAC	2 cut(s)	443, 775
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	657
BsmFI	GGGAC	2 cut(s)	443, 775
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	659
Bso31I	GGTCTC	1 cut(s)	657
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	5 cut(s)	50, 57, 201, 278, 365
Bsp143I	GATC	6 cut(s)	333, 350, 387, 577, 702, 727
Bsp1720I	GCTNAGC	1 cut(s)	44
BspACI	CCGC	2 cut(s)	102, 397
BspANI	GGCC	1 cut(s)	659
BspCNI	CTCAG	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	106, 269, 842
BspOI	GCTAGC	1 cut(s)	555
BspPI	GGATC	5 cut(s)	341, 358, 395, 585, 722
BspQI	GCTCTTC	1 cut(s)	353
BspT104I	TTCGAA	1 cut(s)	77
BspT107I	GGYRCC	2 cut(s)	104, 267
BspTNI	GGTCTC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	26
BsrFI	RCCGGY	2 cut(s)	12, 107
BsrI	ACTGG	3 cut(s)	271, 343, 721
BssAI	RCCGGY	2 cut(s)	12, 107
BssECI	CCNNGG	2 cut(s)	460, 669
BssMI	GATC	6 cut(s)	333, 350, 387, 577, 702, 727
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	2 cut(s)	460, 669
Bst2UI	CCWGG	1 cut(s)	848
Bst4CI	ACNGT	3 cut(s)	184, 367, 482
Bst6I	CTCTTC	2 cut(s)	353, 825
BstACI	GRCGYC	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	692
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	7 cut(s)	10, 39, 201, 411, 553, 606, 687
BstDEI	CTNAG	4 cut(s)	44, 344, 826, 852
BstF5I	GGATG	2 cut(s)	26, 169
BstFNI	CGCG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	43, 107
BstKTI	GATC	6 cut(s)	336, 353, 390, 580, 705, 730
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	6 cut(s)	333, 350, 387, 577, 702, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	593, 682
BstNI	CCWGG	1 cut(s)	848
BstSCI	CCNGG	1 cut(s)	846
BstSLI	GKGCMC	1 cut(s)	201
BstUI	CGCG	1 cut(s)	102
BstV2I	GAAGAC	3 cut(s)	134, 228, 483
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	659
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	26, 169
BtsIMutI	CAGTG	5 cut(s)	269, 278, 336, 363, 714
Cac8I	GCNNGC	7 cut(s)	10, 39, 201, 411, 553, 606, 687
CfoI	GCGC	2 cut(s)	43, 107
Cfr10I	RCCGGY	2 cut(s)	12, 107
CseI	GACGC	1 cut(s)	777
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	4 cut(s)	443, 631, 647, 795
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	4 cut(s)	44, 344, 826, 852
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	6 cut(s)	335, 352, 389, 579, 704, 729
DpnII	GATC	6 cut(s)	333, 350, 387, 577, 702, 727
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	2 cut(s)	353, 825
EarI	CTCTTC	2 cut(s)	353, 825
Eco130I	CCWWGG	2 cut(s)	460, 669
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	657
Eco57I	CTGAAG	1 cut(s)	828
Eco72I	CACGTG	1 cut(s)	692
EcoRII	CCWGG	1 cut(s)	846
EcoT14I	CCWWGG	2 cut(s)	460, 669
EcoT38I	GRGCYC	1 cut(s)	57
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
ErhI	CCWWGG	2 cut(s)	460, 669
FaeI	CATG	4 cut(s)	446, 634, 650, 798
FaqI	GGGAC	2 cut(s)	443, 775
FatI	CATG	4 cut(s)	442, 630, 646, 794
FauNDI	CATATG	1 cut(s)	733
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	2 cut(s)	13, 176
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	2 cut(s)	422, 552
GlaI	GCGC	2 cut(s)	42, 106
GluI	GCNGC	1 cut(s)	103
GsaI	CCCAGC	2 cut(s)	86, 207
GsuI	CTGGAG	3 cut(s)	555, 630, 830
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	2 cut(s)	13, 108
HgaI	GACGC	1 cut(s)	777
HhaI	GCGC	2 cut(s)	43, 107
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	446, 634, 650, 798
Hin6I	GCGC	2 cut(s)	41, 105
HinP1I	GCGC	2 cut(s)	41, 105
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	4 cut(s)	209, 451, 537, 737
HpaII	CCGG	2 cut(s)	13, 108
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	4 cut(s)	177, 422, 455, 581
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	67, 70
HpyAV	CCTTC	3 cut(s)	130, 567, 829
HpyCH4III	ACNGT	3 cut(s)	184, 367, 482
HpyCH4IV	ACGT	2 cut(s)	62, 691
HpyCH4V	TGCA	5 cut(s)	19, 485, 596, 689, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	593, 682
HpyF3I	CTNAG	4 cut(s)	44, 344, 826, 852
HpySE526I	ACGT	2 cut(s)	62, 691
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	446, 634, 650, 798
HspAI	GCGC	2 cut(s)	41, 105
KasI	GGCGCC	1 cut(s)	104
Kzo9I	GATC	6 cut(s)	333, 350, 387, 577, 702, 727
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	225
LweI	GCATC	3 cut(s)	35, 520, 574
MaeI	CTAG	2 cut(s)	422, 552
MaeII	ACGT	2 cut(s)	62, 691
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	6 cut(s)	335, 352, 389, 579, 704, 729
MboI	GATC	6 cut(s)	333, 350, 387, 577, 702, 727
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	5 cut(s)	50, 57, 201, 278, 365
MluCI	AATT	4 cut(s)	187, 247, 720, 748
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	546, 746
MnlI	CCTC	9 cut(s)	40, 43, 163, 492, 502, 616, 649, 770, 854
MroXI	GAANNNNTTC	1 cut(s)	839
MseI	TTAA	2 cut(s)	468, 764
MslI	CAYNNNNRTG	1 cut(s)	651
MspI	CCGG	2 cut(s)	13, 108
MspR9I	CCNGG	1 cut(s)	848
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	848
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	593, 682
NarI	GGCGCC	1 cut(s)	105
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	6 cut(s)	333, 350, 387, 577, 702, 727
NheI	GCTAGC	1 cut(s)	551
NlaIII	CATG	4 cut(s)	446, 634, 650, 798
NlaIV	GGNNCC	3 cut(s)	106, 269, 842
NmuCI	GTSAC	1 cut(s)	455
NspV	TTCGAA	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	2 cut(s)	209, 451
PflFI	GACNNNGTC	1 cut(s)	434
PkrI	GCNGC	1 cut(s)	104
PleI	GAGTC	2 cut(s)	545, 745
PluTI	GGCGCC	1 cut(s)	108
PmaCI	CACGTG	1 cut(s)	692
PmlI	CACGTG	1 cut(s)	692
PpsI	GAGTC	2 cut(s)	545, 745
Ppu21I	YACGTR	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	846
PspCI	CACGTG	1 cut(s)	692
PspFI	CCCAGC	2 cut(s)	82, 203
PspGI	CCWGG	1 cut(s)	846
PspN4I	GGNNCC	3 cut(s)	106, 269, 842
PsuI	RGATCY	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	468, 764
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	6 cut(s)	333, 350, 387, 577, 702, 727
SchI	GAGTC	2 cut(s)	546, 746
ScrFI	CCNGG	1 cut(s)	848
SduI	GDGCHC	5 cut(s)	50, 57, 201, 278, 365
SfaNI	GCATC	3 cut(s)	35, 520, 574
SfoI	GGCGCC	1 cut(s)	106
SfuI	TTCGAA	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	651
Sse9I	AATT	4 cut(s)	187, 247, 720, 748
SsiI	CCGC	2 cut(s)	102, 397
SspDI	GGCGCC	1 cut(s)	104
SspMI	CTAG	2 cut(s)	422, 552
StyD4I	CCNGG	1 cut(s)	846
StyI	CCWWGG	2 cut(s)	460, 669
TaaI	ACNGT	3 cut(s)	184, 367, 482
TaiI	ACGT	2 cut(s)	65, 694
TaqI	TCGA	5 cut(s)	57, 77, 176, 239, 251
TasI	AATT	4 cut(s)	187, 247, 720, 748
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	209, 451
Tru1I	TTAA	2 cut(s)	468, 764
Tru9I	TTAA	2 cut(s)	468, 764
TscAI	CASTG	5 cut(s)	269, 278, 343, 370, 721
TseFI	GTSAC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	2 cut(s)	17, 619
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	5 cut(s)	269, 278, 343, 370, 721
Tth111I	GACNNNGTC	1 cut(s)	434
XapI	RAATTY	2 cut(s)	187, 247
XbaI	TCTAGA	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	2 cut(s)	422, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.