Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008976

Physical Location & Seq

Genomic Coordinates Forward (+)

13191410 .. 13194006

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATTTTGCTAGACATGCAAGCCAAATCACTGCAATGGGCGCCGTCGCCGGGACTCCGGGTCGGGGTCGAAACGTCTTCTTTGTCGCAGCTGGCGGCCGTGAACTTGCCCTGTGGTGCTTCTGTGAATAGCTTGAAAGCCAGGGGTTTGTTTGTAGTAAAGGCCATGGAGGTGGAGGGTTCCAGAACGGCGAGTCTGAATGGCCACGCTGAGAGTTCAGGCACTGAGCAAGAGTTGCTTAAACAAAAGGGGTGTGTCATTTGGATCACCGGTCTCAGCGGTTCAGGGAAGAGCACGGTGGCGTGTGCTTTGGGTGGGAGTTTGTATCGCAGGGGAAAGCTGTCGTACATTCTTGATGGGGACAATGTCAGGCATGGCCTGAATCACGACCTTAGTTTTAAAGCAGAAGATCGTGCAGAGAACATTCGGAGGATTGGGGAAGTGGCAAAACTGTTTGCTGATGCCGGAGTTATTTGTATTGCTAGCGTGGTTTCTCCTTATAGAAGGGATCGTGATGCCTGCCGTGCAATGCTACCTGCTGGAGACTTCATTGAGGTTTGTTTTACTGGGATTGATGATCCATATGAGCAACCGTTAGATTGTGAGATAGTATTATCACATAAAGGAGGAACCTGTCCTTCCCCATGTGAGATGGCCGAAGAAGTAGTTTCTTACTTGGAAGATCAGGGGTTCCTCCAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004020 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

235

Amino Acids

25.04

Weight (kDa)

5.3

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14750
fragaria_vesca	FvH4_2g04460
malus_domestica	MD05G1100600.v1.1 MD10G1105800.v1.1
prunus_persica	Prupe.8G145000_v2.0.a1 Prupe.8G145000_v2.0.a1
pyrus_communis	pycom05g09920 pycom10g09120
rosa_chinensis	RchiOBHm_Chr6g0253831
rosa_laevigata	RLG00000014962
rosa_multiflora	Rmu_co7978700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211480
rosa_rugosa	Rorug05G0548000 Rorug05G0548100 Rorug07G0194700
rosa_samantha	Rh4AG288600 Rh5AG196500 Rh6AG063600 Rh6BG057100 Rh6CG057100 Rh6DG054300
rosa_wichuraiana	Rw6G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	544
AccB1I	GGYRCC	1 cut(s)	40
AciI	CCGC	2 cut(s)	95, 279
AclWI	GGATC	3 cut(s)	272, 516, 572
AcoI	YGGCCR	3 cut(s)	96, 202, 654
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	2 cut(s)	50, 64
AgeI	ACCGGT	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	136
AhdI	GACNNNNNGTC	1 cut(s)	59
AjnI	CCWGG	2 cut(s)	140, 696
AluBI	AGCT	3 cut(s)	91, 132, 340
AluI	AGCT	3 cut(s)	91, 132, 340
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	2 cut(s)	278, 537
AlwI	GGATC	3 cut(s)	272, 516, 572
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	5 cut(s)	96, 162, 202, 376, 654
ApeKI	GCWGC	1 cut(s)	88
AsiGI	ACCGGT	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	43
AsuC2I	CCSGG	2 cut(s)	51, 59
AsuHPI	GGTGA	1 cut(s)	259
AsuNHI	GCTAGC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	2 cut(s)	350, 646
BceAI	ACGGC	4 cut(s)	28, 83, 204, 507
BciT130I	CCWGG	2 cut(s)	142, 698
BcnI	CCSGG	2 cut(s)	51, 59
BcoDI	GTCTC	2 cut(s)	278, 537
BfaI	CTAG	2 cut(s)	11, 483
BfoI	RGCGCY	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	544
BisI	GCNGC	2 cut(s)	89, 96
BlsI	GCNGC	2 cut(s)	90, 97
Bme1390I	CCNGG	4 cut(s)	51, 59, 142, 698
BmeRI	GACNNNNNGTC	1 cut(s)	59
BmiI	GGNNCC	4 cut(s)	42, 181, 631, 692
BmrFI	CCNGG	4 cut(s)	51, 59, 142, 698
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	2 cut(s)	451, 505
BmtI	GCTAGC	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	2 cut(s)	561, 680
BpuMI	CCSGG	2 cut(s)	51, 59
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	141, 165
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 64
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	571
Bse3DI	GCAATG	2 cut(s)	41, 534
BseBI	CCWGG	2 cut(s)	142, 698
BseDI	CCNNGG	2 cut(s)	141, 165
BseLI	CCNNNNNNNGG	2 cut(s)	50, 64
BseMI	GCAATG	2 cut(s)	41, 534
BseMII	CTCAG	3 cut(s)	201, 216, 289
BseNI	ACTGG	1 cut(s)	571
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	435
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	5 cut(s)	98, 164, 204, 378, 656
BshNI	GGYRCC	1 cut(s)	40
BshTI	ACCGGT	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	4 cut(s)	50, 58, 270, 465
BslFI	GGGAC	2 cut(s)	66, 374
BslI	CCNNNNNNNGG	2 cut(s)	50, 64
BsmAI	GTCTC	2 cut(s)	278, 537
BsmFI	GGGAC	2 cut(s)	66, 374
BsnI	GGCC	5 cut(s)	98, 164, 204, 378, 656
Bso31I	GGTCTC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	5 cut(s)	264, 409, 508, 577, 682
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	2 cut(s)	95, 279
BspANI	GGCC	5 cut(s)	98, 164, 204, 378, 656
BspCNI	CTCAG	3 cut(s)	202, 217, 288
BspLI	GGNNCC	4 cut(s)	42, 181, 631, 692
BspMI	ACCTGC	1 cut(s)	544
BspOI	GCTAGC	1 cut(s)	486
BspPI	GGATC	3 cut(s)	272, 516, 572
BspQI	GCTCTTC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	2 cut(s)	41, 534
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	571
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	141, 165
BssMI	GATC	5 cut(s)	264, 409, 508, 577, 682
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	142, 698
Bst4CI	ACNGT	3 cut(s)	298, 453, 594
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstC8I	GCNNGC	4 cut(s)	21, 93, 484, 520
BstDEI	CTNAG	4 cut(s)	210, 225, 275, 392
BstDSI	CCRYGG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	5 cut(s)	267, 412, 511, 580, 685
BstMAI	GTCTC	2 cut(s)	278, 537
BstMBI	GATC	5 cut(s)	264, 409, 508, 577, 682
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 40, 235, 524
BstNI	CCWGG	2 cut(s)	142, 698
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	4 cut(s)	49, 57, 140, 696
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	5 cut(s)	98, 164, 204, 378, 656
BtgI	CCRYGG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 222
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	4 cut(s)	21, 93, 484, 520
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	346
CspAI	ACCGGT	1 cut(s)	269
CviAII	CATG	4 cut(s)	16, 166, 374, 645
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	4 cut(s)	210, 225, 275, 392
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	5 cut(s)	266, 411, 510, 579, 684
DpnII	GATC	5 cut(s)	264, 409, 508, 577, 682
DraI	TTTAAA	1 cut(s)	400
DriI	GACNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	3 cut(s)	96, 202, 654
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	284
Eam1105I	GACNNNNNGTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	284
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	278
Eco52I	CGGCCG	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	140, 696
EcoT14I	CCWWGG	1 cut(s)	165
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	19, 169, 377, 648
FaiI	YATR	9 cut(s)	17, 167, 375, 501, 583, 585, 621, 646, 703
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	2 cut(s)	66, 374
FatI	CATG	4 cut(s)	15, 165, 373, 644
FauNDI	CATATG	1 cut(s)	583
Fnu4HI	GCNGC	2 cut(s)	89, 96
Fsp4HI	GCNGC	2 cut(s)	89, 96
FspBI	CTAG	2 cut(s)	11, 483
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	2 cut(s)	89, 96
GsuI	CTGGAG	2 cut(s)	561, 680
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	5 cut(s)	98, 164, 204, 378, 656
HapII	CCGG	4 cut(s)	50, 58, 270, 465
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	4 cut(s)	19, 169, 377, 648
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	3 cut(s)	54, 193, 382
HpaII	CCGG	4 cut(s)	50, 58, 270, 465
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	198, 429
Hpy188III	TCNNGA	4 cut(s)	183, 353, 386, 512
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	498, 648
HpyCH4III	ACNGT	3 cut(s)	298, 453, 594
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	4 cut(s)	19, 34, 416, 527
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 40, 235, 524
HpyF3I	CTNAG	4 cut(s)	210, 225, 275, 392
HpySE526I	ACGT	1 cut(s)	74
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	19, 169, 377, 648
HspAI	GCGC	1 cut(s)	41
KasI	GGCGCC	1 cut(s)	40
Kzo9I	GATC	5 cut(s)	264, 409, 508, 577, 682
LguI	GCTCTTC	1 cut(s)	284
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	2 cut(s)	451, 505
MaeI	CTAG	2 cut(s)	11, 483
MaeII	ACGT	1 cut(s)	74
MalI	GATC	5 cut(s)	266, 411, 510, 579, 684
MboI	GATC	5 cut(s)	264, 409, 508, 577, 682
MboII	GAAGA	5 cut(s)	69, 301, 419, 671, 692
MhlI	GDGCHC	1 cut(s)	296
MlsI	TGGCCA	1 cut(s)	204
MluNI	TGGCCA	1 cut(s)	204
Mly113I	GGCGCC	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	48, 202
MnlI	CCTC	6 cut(s)	163, 169, 423, 547, 620, 704
Mox20I	TGGCCA	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	2 cut(s)	240, 399
MslI	CAYNNNNRTG	2 cut(s)	34, 170
Msp20I	TGGCCA	1 cut(s)	204
MspA1I	CMGCKG	2 cut(s)	91, 279
MspI	CCGG	4 cut(s)	50, 58, 270, 465
MspR9I	CCNGG	4 cut(s)	51, 59, 142, 698
MvaI	CCWGG	2 cut(s)	142, 698
MwoI	GCNNNNNNNGC	4 cut(s)	16, 40, 235, 524
NarI	GGCGCC	1 cut(s)	41
NciI	CCSGG	2 cut(s)	51, 59
NcoI	CCATGG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	5 cut(s)	264, 409, 508, 577, 682
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	4 cut(s)	19, 169, 377, 648
NlaIV	GGNNCC	4 cut(s)	42, 181, 631, 692
NspI	RCATGY	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	382
PflFI	GACNNNGTC	1 cut(s)	365
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	90, 97
PleI	GAGTC	2 cut(s)	48, 201
PluTI	GGCGCC	1 cut(s)	44
PpsI	GAGTC	2 cut(s)	48, 201
Psp6I	CCWGG	2 cut(s)	140, 696
PspGI	CCWGG	2 cut(s)	140, 696
PspN4I	GGNNCC	4 cut(s)	42, 181, 631, 692
PstNI	CAGNNNCTG	1 cut(s)	224
PsyI	GACNNNGTC	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	2 cut(s)	34, 170
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	240, 399
SatI	GCNGC	2 cut(s)	89, 96
Sau3AI	GATC	5 cut(s)	264, 409, 508, 577, 682
SchI	GAGTC	2 cut(s)	48, 202
ScrFI	CCNGG	4 cut(s)	51, 59, 142, 698
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	9 cut(s)	77, 93, 134, 174, 342, 393, 538, 558, 635
SfaNI	GCATC	2 cut(s)	451, 505
SfoI	GGCGCC	1 cut(s)	42
SmiMI	CAYNNNNRTG	2 cut(s)	34, 170
SsiI	CCGC	2 cut(s)	95, 279
SspDI	GGCGCC	1 cut(s)	40
SspMI	CTAG	2 cut(s)	11, 483
StyD4I	CCNGG	4 cut(s)	49, 57, 140, 696
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	3 cut(s)	298, 453, 594
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	69
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	2 cut(s)	240, 399
Tru9I	TTAA	2 cut(s)	240, 399
TscAI	CASTG	2 cut(s)	36, 229
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	538
TspRI	CASTG	2 cut(s)	36, 229
Tth111I	GACNNNGTC	1 cut(s)	365
XceI	RCATGY	1 cut(s)	19
XspI	CTAG	2 cut(s)	11, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.