Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008976

Physical Location & Seq

Genomic Coordinates Forward (+)

5771192 .. 5775102

Gene Structure 3911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAATGCCAGCCGGTTGCAATGGGCATCTTCCTCGCCTGCGGTGGTCGGTCTTGAAACGTCGTCGTCTTGTTCGAAGCTGGGTTTTGTGAACTTTCGCGGTGGCGGTTGTGGAGATAGCTTGAAGAAGACGAAGAAGGGTTTGTTTGTGATAAAGGCGATGGATGTGGAGGGTTCGAGAACCGTGAATTTGAATGGGCACGCTGGGGATTCAGATAAAAATGGGAGCTTGTTGTCTTCGATTGGAAATTCGACCAACATTCAGTGGTACCAGTGCTCGGTGAAGAAAGAAGATAGGGAAAATATGCTTAAGCAAAAAGGGTGTGTTATATGGATCACTGGGCTCAGTGGATCAGGGAAGAGCACTGTTGCTTGTGCTTTGAGTGGGATCTTGTACCGCAGGGGAAAGCTGGCTTATGTTCTAGATGGGGACAATGTCAGGCATGGCTTGAATCGTGACCTTGGTTTTAAAGCAGAAGACCGTGCAGAGAACATAAGGAGGATTGGGGAGGTGGCGAAGCTGTTTGCCGATGCTGGAGTCATTTGTATTGCTAGCTTGATTTCACCTTATAGAAGGGATCGTGATGCCTGTCGTGCATTATTGCCTGCTGGAGAGTTTATTGAGGTGTTCATGGACATTCCACTCCATGTTTGTGAGGCCAGAGACCCCAAGGGACTATATAAGCTTGCACGTGCAGGGAAGATCAAAGGTACTAAAATGGGCTTTGTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004020 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

244

Amino Acids

26.42

Weight (kDa)

9.47

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	106 - 237	2.4e-60	Adenylylsulphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14750
fragaria_vesca	FvH4_2g04460
malus_domestica	MD05G1100600.v1.1 MD10G1105800.v1.1
prunus_persica	Prupe.8G145000_v2.0.a1 Prupe.8G145000_v2.0.a1
pyrus_communis	pycom05g09920 pycom10g09120
rosa_chinensis	RchiOBHm_Chr6g0253831
rosa_laevigata	RLG00000014962
rosa_multiflora	Rmu_co7978700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211480
rosa_rugosa	Rorug05G0548000 Rorug05G0548100 Rorug07G0194700
rosa_samantha	Rh4AG288600 Rh5AG196500 Rh6AG063600 Rh6BG057100 Rh6CG057100 Rh6DG054300
rosa_wichuraiana	Rw6G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	267
AccII	CGCG	1 cut(s)	99
AciI	CCGC	4 cut(s)	41, 99, 105, 397
AclWI	GGATC	4 cut(s)	341, 358, 395, 585
AcsI	RAATTY	2 cut(s)	187, 247
AcvI	CACGTG	1 cut(s)	692
AfaI	GTAC	3 cut(s)	269, 395, 712
AfiI	CCNNNNNNNGG	1 cut(s)	277
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	4 cut(s)	56, 124, 193, 451
AluBI	AGCT	7 cut(s)	79, 120, 228, 409, 520, 555, 685
AluI	AGCT	7 cut(s)	79, 120, 228, 409, 520, 555, 685
Alw21I	GWGCWC	2 cut(s)	278, 365
Alw26I	GTCTC	1 cut(s)	657
AlwI	GGATC	4 cut(s)	341, 358, 395, 585
AoxI	GGCC	1 cut(s)	657
ApoI	RAATTY	2 cut(s)	187, 247
Asp718I	GGTACC	1 cut(s)	267
AsuHPI	GGTGA	2 cut(s)	292, 555
AsuII	TTCGAA	1 cut(s)	74
AsuNHI	GCTAGC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	345
BbrPI	CACGTG	1 cut(s)	692
BbsI	GAAGAC	3 cut(s)	134, 228, 483
Bbv12I	GWGCWC	2 cut(s)	278, 365
BccI	CCATC	2 cut(s)	154, 419
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BcoDI	GTCTC	1 cut(s)	657
BfaI	CTAG	2 cut(s)	422, 552
BfrI	CTTAAG	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	269
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	3 cut(s)	35, 520, 574
BmtI	GCTAGC	1 cut(s)	555
BmuI	ACTGGG	1 cut(s)	348
BpiI	GAAGAC	3 cut(s)	134, 228, 483
BpmI	CTGGAG	2 cut(s)	555, 630
Bpu14I	TTCGAA	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	657
BsaJI	CCNNGG	2 cut(s)	460, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	12
Bse1I	ACTGG	2 cut(s)	271, 343
Bse3DI	GCAATG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	460, 669
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	358
BseNI	ACTGG	2 cut(s)	271, 343
BseSI	GKGCMC	1 cut(s)	201
BseYI	CCCAGC	2 cut(s)	79, 203
BsgI	GTGCAG	2 cut(s)	504, 714
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	659
BshNI	GGYRCC	1 cut(s)	267
BsiHKAI	GWGCWC	2 cut(s)	278, 365
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	2 cut(s)	443, 687
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	657
BsmFI	GGGAC	2 cut(s)	443, 687
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	659
Bso31I	GGTCTC	1 cut(s)	657
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	4 cut(s)	201, 278, 345, 365
Bsp143I	GATC	5 cut(s)	333, 350, 387, 577, 702
BspACI	CCGC	4 cut(s)	41, 99, 105, 397
BspANI	GGCC	1 cut(s)	659
BspCNI	CTCAG	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	269
BspOI	GCTAGC	1 cut(s)	555
BspPI	GGATC	4 cut(s)	341, 358, 395, 585
BspQI	GCTCTTC	1 cut(s)	353
BspT104I	TTCGAA	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	267
BspTI	CTTAAG	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	271, 343
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	460, 669
BssMI	GATC	5 cut(s)	333, 350, 387, 577, 702
BssT1I	CCWWGG	2 cut(s)	460, 669
Bst4CI	ACNGT	3 cut(s)	184, 367, 482
Bst6I	CTCTTC	1 cut(s)	353
BstAFI	CTTAAG	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	692
BstBI	TTCGAA	1 cut(s)	74
BstC8I	GCNNGC	7 cut(s)	10, 39, 201, 411, 553, 606, 687
BstDEI	CTNAG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	5 cut(s)	336, 353, 390, 580, 705
BstMAI	GTCTC	1 cut(s)	657
BstMBI	GATC	5 cut(s)	333, 350, 387, 577, 702
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstSLI	GKGCMC	1 cut(s)	201
BstUI	CGCG	1 cut(s)	99
BstV2I	GAAGAC	3 cut(s)	134, 228, 483
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	659
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	5 cut(s)	269, 278, 336, 352, 363
Cac8I	GCNNGC	7 cut(s)	10, 39, 201, 411, 553, 606, 687
Cfr10I	RCCGGY	1 cut(s)	12
Csp6I	GTAC	3 cut(s)	268, 394, 711
CviAII	CATG	3 cut(s)	443, 631, 647
CviQI	GTAC	3 cut(s)	268, 394, 711
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	5 cut(s)	335, 352, 389, 579, 704
DpnII	GATC	5 cut(s)	333, 350, 387, 577, 702
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco130I	CCWWGG	2 cut(s)	460, 669
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	657
Eco72I	CACGTG	1 cut(s)	692
EcoT14I	CCWWGG	2 cut(s)	460, 669
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	2 cut(s)	460, 669
FaeI	CATG	3 cut(s)	446, 634, 650
FaqI	GGGAC	2 cut(s)	443, 687
FatI	CATG	3 cut(s)	442, 630, 646
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	345
FspBI	CTAG	2 cut(s)	422, 552
GsaI	CCCAGC	2 cut(s)	83, 207
GsuI	CTGGAG	2 cut(s)	555, 630
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	1 cut(s)	13
Hin1II	CATG	3 cut(s)	446, 634, 650
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	3 cut(s)	209, 451, 537
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	2 cut(s)	292, 555
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	5 cut(s)	53, 177, 422, 455, 581
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	64, 67
HpyAV	CCTTC	2 cut(s)	130, 567
HpyCH4III	ACNGT	3 cut(s)	184, 367, 482
HpyCH4IV	ACGT	2 cut(s)	59, 691
HpyCH4V	TGCA	5 cut(s)	19, 485, 596, 689, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	2 cut(s)	59, 691
Hsp92II	CATG	3 cut(s)	446, 634, 650
KpnI	GGTACC	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	333, 350, 387, 577, 702
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	225
LweI	GCATC	3 cut(s)	35, 520, 574
MaeI	CTAG	2 cut(s)	422, 552
MaeII	ACGT	2 cut(s)	59, 691
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	5 cut(s)	335, 352, 389, 579, 704
MboI	GATC	5 cut(s)	333, 350, 387, 577, 702
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	4 cut(s)	201, 278, 345, 365
MluCI	AATT	2 cut(s)	187, 247
MlyI	GAGTC	1 cut(s)	546
MnlI	CCTC	6 cut(s)	43, 163, 492, 502, 616, 649
MseI	TTAA	3 cut(s)	309, 468, 733
MslI	CAYNNNNRTG	1 cut(s)	651
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	10
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	593
NdeII	GATC	5 cut(s)	333, 350, 387, 577, 702
NheI	GCTAGC	1 cut(s)	551
NlaIII	CATG	3 cut(s)	446, 634, 650
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	455
NspV	TTCGAA	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	209, 451
PflFI	GACNNNGTC	1 cut(s)	434
PleI	GAGTC	1 cut(s)	545
PmaCI	CACGTG	1 cut(s)	692
PmlI	CACGTG	1 cut(s)	692
PpsI	GAGTC	1 cut(s)	545
Ppu21I	YACGTR	1 cut(s)	692
PspCI	CACGTG	1 cut(s)	692
PspFI	CCCAGC	2 cut(s)	79, 203
PspN4I	GGNNCC	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	3 cut(s)	269, 395, 712
RsaNI	GTAC	3 cut(s)	268, 394, 711
RseI	CAYNNNNRTG	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	3 cut(s)	309, 468, 733
Sau3AI	GATC	5 cut(s)	333, 350, 387, 577, 702
SchI	GAGTC	1 cut(s)	546
SduI	GDGCHC	4 cut(s)	201, 278, 345, 365
SfaNI	GCATC	3 cut(s)	35, 520, 574
SfuI	TTCGAA	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	2 cut(s)	187, 247
SsiI	CCGC	4 cut(s)	41, 99, 105, 397
SspMI	CTAG	2 cut(s)	422, 552
StyI	CCWWGG	2 cut(s)	460, 669
TaaI	ACNGT	3 cut(s)	184, 367, 482
TaiI	ACGT	2 cut(s)	62, 694
TaqI	TCGA	4 cut(s)	74, 176, 239, 251
TaqII	GACCGA	1 cut(s)	38
TasI	AATT	2 cut(s)	187, 247
TfiI	GAWTC	2 cut(s)	209, 451
Tru1I	TTAA	3 cut(s)	309, 468, 733
Tru9I	TTAA	3 cut(s)	309, 468, 733
TscAI	CASTG	5 cut(s)	269, 278, 343, 352, 370
TseFI	GTSAC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	2 cut(s)	17, 619
TspRI	CASTG	5 cut(s)	269, 278, 343, 352, 370
Tth111I	GACNNNGTC	1 cut(s)	434
Vha464I	CTTAAG	1 cut(s)	308
XapI	RAATTY	2 cut(s)	187, 247
XbaI	TCTAGA	1 cut(s)	421
XspI	CTAG	2 cut(s)	422, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.