Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008976

Physical Location & Seq

Genomic Coordinates Forward (+)

17283625 .. 17287364

Gene Structure 3740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1105800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGATTTTGCGAGACATGCAAGCCAAGTCGCTGCAATGGGCGGCGTCTCCTGGGCTCCGGGTCGGGCTCGAAACGCCGCCGTCGTCCTCGTCCTGGTCGCAGCTGGCGGTCGTGAACTTGCACGGTGGCGCTTCTGTAAATAGCTTGAAAGCCAGAGGTTTGTTTGTAGTAAAGGCCATGGAGGTGGAGGGTTCCAAAACGGCGAGTCTGAATGGGCACGCCGGGAGCTCAGATAAAAATGGGAACTTGTTGTCTTTGGTTGGAAATTCAACCAATATTAAGTGGCATGAGTGCTCGTTGAACAAAACTGACAGGCAGAAGTTGCTTAAACAAAAGGGCTGTGTCATTTGGATCACCGGTCTCAGCGGTTCAGGGAAGAGCACGGTGGCATGTGCTTTGGGTGGGAGTTTGTACCGCAGGGGGAAGTTGTCTTACGTTCTTGATGGGGACAATGTCAGGCATGGCTTGAATCGCGACCTTAGTTTTAAAGCAGAAGATCGTGCAGAGAACATTCGGAGGATTGGTGAGGTGGCGAAATTGTTTTCTGATGCTGGAGTTATTTGTATTGCTAGCTTGATTTCTCCTTATAGAAAGGATCGTGATGCCTGCCGTGCAATGCTACCTGCTGGAGATTTTATTGAGGTGTTCATGGATGTTCCACTCCAAGTTTGTGAAGCTAGAGACCCGAAGGGCCTATATAAGCTTGCCCGTGCAGGGAAGATCAAAGGTTTTACCGGGATTGATGATCCATATGAGCCACCACTAAATTGTGAGATAGTATTAACACATAAAGGAGGAGCGTGTCCTTCCCCATGTGAGATGGCTGAAGAAGTAGTTTCTTACTTGGAAGATCAGGGGTTCCTCCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004020 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

291

Amino Acids

31.24

Weight (kDa)

8.67

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	112 - 261	1.3e-69	Adenylylsulphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14750
fragaria_vesca	FvH4_2g04460
malus_domestica	MD05G1100600.v1.1 MD10G1105800.v1.1
prunus_persica	Prupe.8G145000_v2.0.a1 Prupe.8G145000_v2.0.a1
pyrus_communis	pycom05g09920 pycom10g09120
rosa_chinensis	RchiOBHm_Chr6g0253831
rosa_laevigata	RLG00000014962
rosa_multiflora	Rmu_co7978700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211480
rosa_rugosa	Rorug05G0548000 Rorug05G0548100 Rorug07G0194700
rosa_samantha	Rh4AG288600 Rh5AG196500 Rh6AG063600 Rh6BG057100 Rh6CG057100 Rh6DG054300
rosa_wichuraiana	Rw6G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	631
AccII	CGCG	1 cut(s)	474
AciI	CCGC	5 cut(s)	41, 77, 107, 366, 415
AclWI	GGATC	3 cut(s)	359, 603, 740
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	846
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	2 cut(s)	93, 714
AgeI	ACCGGT	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	148, 270, 301, 469
AjnI	CCWGG	2 cut(s)	49, 92
AluBI	AGCT	6 cut(s)	103, 144, 228, 573, 677, 703
AluI	AGCT	6 cut(s)	103, 144, 228, 573, 677, 703
Alw21I	GWGCWC	3 cut(s)	230, 296, 383
Alw26I	GTCTC	4 cut(s)	6, 51, 365, 675
AlwI	GGATC	3 cut(s)	359, 603, 740
AoxI	GGCC	2 cut(s)	174, 691
ApeKI	GCWGC	2 cut(s)	31, 100
ApoI	RAATTY	1 cut(s)	265
AsiGI	ACCGGT	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	691
AsuC2I	CCSGG	3 cut(s)	59, 223, 736
AsuHPI	GGTGA	2 cut(s)	346, 536
AsuNHI	GCTAGC	1 cut(s)	569
BaeGI	GKGCMC	1 cut(s)	219
BanII	GRGCYC	3 cut(s)	57, 69, 230
BarI	GAAGNNNNNNTAC	2 cut(s)	416, 448
Bbv12I	GWGCWC	3 cut(s)	230, 296, 383
BbvI	GCAGC	2 cut(s)	18, 112
BccI	CCATC	2 cut(s)	437, 814
BceAI	ACGGC	3 cut(s)	64, 216, 594
BciT130I	CCWGG	2 cut(s)	51, 94
BcnI	CCSGG	3 cut(s)	59, 223, 736
BcoDI	GTCTC	4 cut(s)	6, 51, 365, 675
BfaI	CTAG	2 cut(s)	570, 678
BfoI	RGCGCY	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	631
BisI	GCNGC	4 cut(s)	32, 42, 77, 101
BlsI	GCNGC	4 cut(s)	33, 43, 78, 102
Bme1390I	CCNGG	5 cut(s)	51, 59, 94, 223, 736
BmgT120I	GGNCC	1 cut(s)	691
BmiI	GGNNCC	3 cut(s)	56, 193, 860
BmrFI	CCNGG	5 cut(s)	51, 59, 94, 223, 736
BmsI	GCATC	2 cut(s)	538, 592
BmtI	GCTAGC	1 cut(s)	573
BpmI	CTGGAG	2 cut(s)	573, 648
BpuMI	CCSGG	3 cut(s)	59, 223, 736
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	2 cut(s)	365, 675
BsaJI	CCNNGG	2 cut(s)	50, 177
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 714
Bse118I	RCCGGY	1 cut(s)	356
Bse3DI	GCAATG	2 cut(s)	41, 621
BseBI	CCWGG	2 cut(s)	51, 94
BseDI	CCNNGG	2 cut(s)	50, 177
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	2 cut(s)	93, 714
BseMI	GCAATG	2 cut(s)	41, 621
BseMII	CTCAG	2 cut(s)	243, 376
BseRI	GAGGAG	1 cut(s)	810
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	18, 112
BsgI	GTGCAG	2 cut(s)	522, 732
Bsh1236I	CGCG	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	176, 693
BshTI	ACCGGT	1 cut(s)	356
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	3 cut(s)	230, 296, 383
BsiSI	CCGG	4 cut(s)	58, 222, 357, 735
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	93, 714
BsmAI	GTCTC	4 cut(s)	6, 51, 365, 675
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	176, 693
Bso31I	GGTCTC	2 cut(s)	365, 675
Bsp1286I	GDGCHC	6 cut(s)	57, 69, 219, 230, 296, 383
Bsp143I	GATC	6 cut(s)	351, 496, 595, 720, 745, 850
Bsp19I	CCATGG	1 cut(s)	177
Bsp68I	TCGCGA	1 cut(s)	474
BspACI	CCGC	5 cut(s)	41, 77, 107, 366, 415
BspANI	GGCC	2 cut(s)	176, 693
BspCNI	CTCAG	2 cut(s)	242, 375
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	56, 193, 860
BspMI	ACCTGC	1 cut(s)	631
BspOI	GCTAGC	1 cut(s)	573
BspPI	GGATC	3 cut(s)	359, 603, 740
BspQI	GCTCTTC	1 cut(s)	371
BspTNI	GGTCTC	2 cut(s)	365, 675
BsrDI	GCAATG	2 cut(s)	41, 621
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	50, 177
BssMI	GATC	6 cut(s)	351, 496, 595, 720, 745, 850
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	51, 94
Bst4CI	ACNGT	2 cut(s)	125, 385
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstC8I	GCNNGC	6 cut(s)	21, 105, 219, 571, 607, 705
BstDEI	CTNAG	3 cut(s)	229, 362, 479
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	658
BstFNI	CGCG	1 cut(s)	474
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	6 cut(s)	354, 499, 598, 723, 748, 853
BstMAI	GTCTC	4 cut(s)	6, 51, 365, 675
BstMBI	GATC	6 cut(s)	351, 496, 595, 720, 745, 850
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 73, 322, 471, 611
BstNI	CCWGG	2 cut(s)	51, 94
BstNSI	RCATGY	2 cut(s)	19, 393
BstSCI	CCNGG	5 cut(s)	49, 57, 92, 221, 734
BstSLI	GKGCMC	1 cut(s)	219
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	18, 112
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	176, 693
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	658
BtuMI	TCGCGA	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	6 cut(s)	21, 105, 219, 571, 607, 705
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	691
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	412
CspAI	ACCGGT	1 cut(s)	356
CviAII	CATG	7 cut(s)	16, 178, 287, 390, 461, 649, 813
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	3 cut(s)	229, 362, 479
DpnI	GATC	6 cut(s)	353, 498, 597, 722, 747, 852
DpnII	GATC	6 cut(s)	351, 496, 595, 720, 745, 850
DraI	TTTAAA	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Ecl136II	GAGCTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	3 cut(s)	57, 69, 230
Eco31I	GGTCTC	2 cut(s)	365, 675
Eco53kI	GAGCTC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	846
EcoICRI	GAGCTC	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRII	CCWGG	2 cut(s)	49, 92
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	3 cut(s)	57, 69, 230
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	7 cut(s)	19, 181, 290, 393, 464, 652, 816
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	7 cut(s)	15, 177, 286, 389, 460, 648, 812
FauNDI	CATATG	1 cut(s)	751
Fnu4HI	GCNGC	4 cut(s)	32, 42, 77, 101
FokI	GGATG	1 cut(s)	665
FriOI	GRGCYC	3 cut(s)	57, 69, 230
Fsp4HI	GCNGC	4 cut(s)	32, 42, 77, 101
FspBI	CTAG	2 cut(s)	570, 678
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	4 cut(s)	32, 42, 77, 101
GsuI	CTGGAG	2 cut(s)	573, 648
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	176, 693
HapII	CCGG	4 cut(s)	58, 222, 357, 735
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	7 cut(s)	19, 181, 290, 393, 464, 652, 816
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	2 cut(s)	205, 469
HpaII	CCGG	4 cut(s)	58, 222, 357, 735
HphI	GGTGA	2 cut(s)	346, 536
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	4 cut(s)	210, 232, 516, 547
Hpy188III	TCNNGA	4 cut(s)	112, 440, 473, 599
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	682, 816
HpyCH4III	ACNGT	2 cut(s)	125, 385
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	6 cut(s)	19, 34, 121, 503, 614, 713
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 73, 322, 471, 611
HpyF3I	CTNAG	3 cut(s)	229, 362, 479
HpySE526I	ACGT	1 cut(s)	435
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	7 cut(s)	19, 181, 290, 393, 464, 652, 816
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	6 cut(s)	351, 496, 595, 720, 745, 850
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	3 cut(s)	60, 225, 797
Lsp1109I	GCAGC	2 cut(s)	18, 112
LweI	GCATC	2 cut(s)	538, 592
MaeI	CTAG	2 cut(s)	570, 678
MaeII	ACGT	1 cut(s)	435
MalI	GATC	6 cut(s)	353, 498, 597, 722, 747, 852
MboI	GATC	6 cut(s)	351, 496, 595, 720, 745, 850
MboII	GAAGA	5 cut(s)	388, 506, 730, 839, 860
MhlI	GDGCHC	6 cut(s)	57, 69, 219, 230, 296, 383
MluCI	AATT	3 cut(s)	265, 536, 766
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	9 cut(s)	97, 149, 175, 181, 510, 520, 634, 788, 872
MseI	TTAA	4 cut(s)	279, 327, 486, 782
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	2 cut(s)	103, 366
MspI	CCGG	4 cut(s)	58, 222, 357, 735
MspR9I	CCNGG	5 cut(s)	51, 59, 94, 223, 736
MvaI	CCWGG	2 cut(s)	51, 94
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	5 cut(s)	16, 73, 322, 471, 611
NciI	CCSGG	3 cut(s)	59, 223, 736
NcoI	CCATGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	6 cut(s)	351, 496, 595, 720, 745, 850
NheI	GCTAGC	1 cut(s)	569
NlaIII	CATG	7 cut(s)	19, 181, 290, 393, 464, 652, 816
NlaIV	GGNNCC	3 cut(s)	56, 193, 860
NruI	TCGCGA	1 cut(s)	474
NspI	RCATGY	2 cut(s)	19, 393
PciSI	GCTCTTC	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	469
PflFI	GACNNNGTC	1 cut(s)	452
PinAI	ACCGGT	1 cut(s)	356
PkrI	GCNGC	4 cut(s)	33, 43, 78, 102
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	49, 92
PspGI	CCWGG	2 cut(s)	49, 92
PspN4I	GGNNCC	3 cut(s)	56, 193, 860
PspPI	GGNCC	1 cut(s)	691
PsyI	GACNNNGTC	1 cut(s)	452
PvuII	CAGCTG	1 cut(s)	103
RruI	TCGCGA	1 cut(s)	474
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	230
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	4 cut(s)	279, 327, 486, 782
SatI	GCNGC	4 cut(s)	32, 42, 77, 101
Sau3AI	GATC	6 cut(s)	351, 496, 595, 720, 745, 850
Sau96I	GGNCC	1 cut(s)	691
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	5 cut(s)	51, 59, 94, 223, 736
SduI	GDGCHC	6 cut(s)	57, 69, 219, 230, 296, 383
SfaNI	GCATC	2 cut(s)	538, 592
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	265, 536, 766
SsiI	CCGC	5 cut(s)	41, 77, 107, 366, 415
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	2 cut(s)	570, 678
SstI	GAGCTC	1 cut(s)	230
StyD4I	CCNGG	5 cut(s)	49, 57, 92, 221, 734
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	125, 385
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	1 cut(s)	69
TasI	AATT	3 cut(s)	265, 536, 766
TauI	GCSGC	2 cut(s)	44, 79
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	4 cut(s)	279, 327, 486, 782
Tru9I	TTAA	4 cut(s)	279, 327, 486, 782
TseI	GCWGC	2 cut(s)	31, 100
TspDTI	ATGAA	1 cut(s)	637
Tth111I	GACNNNGTC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	2 cut(s)	19, 393
XspI	CTAG	2 cut(s)	570, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.