Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008976

Physical Location & Seq

Genomic Coordinates Forward (+)

22953653 .. 22962581

Gene Structure 8929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG196500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGAATCACAAGCAGAAGCTCTTAGGCAGTTAACTACAGATGATCTGGAAGCAAAGATTCACACCTTCAGAAATTTCCTCCACCTAAGGACTGAGGCACAAGGGAATACCTCCAGTGGTGCAGATTGTACACGTTCCAGAACCGTGAATTTGAATGGGCATGCTGGACTTCGATATAGCACTGTGGCTTGTGCTTTGAGTGGGAGTTTGTACCGCAGGGGAAAGCGAAGCGTAAATGAGGCTGCAGTTTCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.33

Weight (kDa)

9.23

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14750
fragaria_vesca	FvH4_2g04460
malus_domestica	MD05G1100600.v1.1 MD10G1105800.v1.1
prunus_persica	Prupe.8G145000_v2.0.a1 Prupe.8G145000_v2.0.a1
pyrus_communis	pycom05g09920 pycom10g09120
rosa_chinensis	RchiOBHm_Chr6g0253831
rosa_laevigata	RLG00000014962
rosa_multiflora	Rmu_co7978700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211480
rosa_rugosa	Rorug05G0548000 Rorug05G0548100 Rorug07G0194700
rosa_samantha	Rh4AG288600 Rh5AG196500 Rh6AG063600 Rh6BG057100 Rh6CG057100 Rh6DG054300
rosa_wichuraiana	Rw6G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	73, 148
AcuI	CTGAAG	1 cut(s)	52
AfaI	GTAC	2 cut(s)	130, 212
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	2 cut(s)	73, 148
AxyI	CCTNAGG	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	256
BfmI	CTRYAG	2 cut(s)	36, 243
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	114
Bse21I	CCTNAGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	145, 184
BstAUI	TGTACA	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	3 cut(s)	23, 86, 93
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	164
BstSFI	CTRYAG	2 cut(s)	36, 243
BstV1I	GCAGC	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	121, 180
Cac8I	GCNNGC	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	129, 211
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	3 cut(s)	20, 188, 242
CviKI_1	RGCY	3 cut(s)	20, 188, 242
CviQI	GTAC	2 cut(s)	129, 211
DdeI	CTNAG	3 cut(s)	23, 86, 93
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	52
Eco81I	CCTNAGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	164
FaiI	YATR	3 cut(s)	162, 177, 253
FatI	CATG	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	256
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	97
Hin1II	CATG	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	5, 58
HpaI	GTTAAC	1 cut(s)	33
Hpy166II	GTNNAC	2 cut(s)	33, 131
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	2 cut(s)	47, 138
Hpy8I	GTNNAC	2 cut(s)	33, 131
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	145, 184
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	122, 245
HpyF3I	CTNAG	3 cut(s)	23, 86, 93
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	1 cut(s)	164
KspAI	GTTAAC	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	5 cut(s)	32, 127, 150, 151, 202
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	256
MaeII	ACGT	1 cut(s)	133
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MluCI	AATT	2 cut(s)	73, 148
MnlI	CCTC	4 cut(s)	88, 89, 121, 232
MseI	TTAA	1 cut(s)	32
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	164
NspI	RCATGY	1 cut(s)	164
PaeI	GCATGC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	5, 58
PkrI	GCNGC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	130, 212
RsaNI	GTAC	2 cut(s)	129, 211
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	1 cut(s)	43
SetI	ASST	5 cut(s)	22, 68, 87, 113, 136
SfcI	CTRYAG	2 cut(s)	36, 243
SphI	GCATGC	1 cut(s)	164
Sse9I	AATT	2 cut(s)	73, 148
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	145, 184
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	73, 148
TatI	WGTACW	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	5, 58
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	2 cut(s)	121, 187
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	121, 187
XapI	RAATTY	2 cut(s)	73, 148
XceI	RCATGY	1 cut(s)	164
XspI	CTAG	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.