Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008976

Physical Location & Seq

Genomic Coordinates Forward (+)

9412103 .. 9415281

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG063600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAATGCCAGCCGGTTGCAATGGGCATCTTCCTCGCCTGCGCTGAGCACAGGGCTCGAAACGTCGTCGTCTTGTTCGAAGCTGGGTTTTGTGAACTTTCGCGGCGGCGGTTGTGGAGATAGCTTGAAGACGAAGAAGGGTTTGTTTGTGATAAAGGCGATGGATGTGGAGGGTTCGAGAACCGTGAATTTGAATGGGCACGCTGGGGATTCAGATAAAAATGGGAGCTTGTTGTCTTCGATTGGAAATTCGACCAACATTCAGTGGCACCAGTGCTCGGTGAAGAAAGAAGATAGGGAAAATATGCTGAAACAAAAAGGGTGTGTTATATGGATCACTGGGCTTAGTGGATCAGGGAAGAGCACTGTGGCTTGTGCTTTGAGTGGGATCTTGTACCGCAGGGGAAAGCTGGCTTATGTTCTAGATGGGGACAATGTCAGGCATGGCTTGAATCGTGACCTTGGTTTTAAAGCAGAAGACCGTGCAGAGAACATAAGGAGGATTGGGGAGGTGGCGAAGCTGTTTGCCGATGCTGGAGTCATTTGTATTGCTAGCTTGATTTCTCCGTATAGAAGGGATCGTGATGCCTGTCGTGCATTATTGCCTGCTGGAGAGTTTATTGAGGTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004020 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase

Protein Analysis

210

Amino Acids

22.48

Weight (kDa)

9.24

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	106 - 209	5.2e-44	Adenylylsulphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14750
fragaria_vesca	FvH4_2g04460
malus_domestica	MD05G1100600.v1.1 MD10G1105800.v1.1
prunus_persica	Prupe.8G145000_v2.0.a1 Prupe.8G145000_v2.0.a1
pyrus_communis	pycom05g09920 pycom10g09120
rosa_chinensis	RchiOBHm_Chr6g0253831
rosa_laevigata	RLG00000014962
rosa_multiflora	Rmu_co7978700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211480
rosa_rugosa	Rorug05G0548000 Rorug05G0548100 Rorug07G0194700
rosa_samantha	Rh4AG288600 Rh5AG196500 Rh6AG063600 Rh6BG057100 Rh6CG057100 Rh6DG054300
rosa_wichuraiana	Rw6G005640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	267
AccII	CGCG	1 cut(s)	102
AciI	CCGC	4 cut(s)	102, 105, 108, 397
AclWI	GGATC	4 cut(s)	341, 358, 395, 585
AcsI	RAATTY	2 cut(s)	187, 247
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	127, 193, 451
AluBI	AGCT	6 cut(s)	82, 123, 228, 409, 520, 555
AluI	AGCT	6 cut(s)	82, 123, 228, 409, 520, 555
Alw21I	GWGCWC	3 cut(s)	50, 278, 365
AlwI	GGATC	4 cut(s)	341, 358, 395, 585
ApoI	RAATTY	2 cut(s)	187, 247
AspLEI	GCGC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	292
AsuII	TTCGAA	1 cut(s)	77
AsuNHI	GCTAGC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	3 cut(s)	134, 228, 483
Bbv12I	GWGCWC	3 cut(s)	50, 278, 365
BccI	CCATC	2 cut(s)	154, 419
BcgI	CGANNNNNNTGC	4 cut(s)	15, 37, 49, 71
BfaI	CTAG	2 cut(s)	422, 552
BisI	GCNGC	2 cut(s)	103, 106
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	2 cut(s)	104, 107
BmiI	GGNNCC	1 cut(s)	269
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	3 cut(s)	35, 520, 574
BmtI	GCTAGC	1 cut(s)	555
BmuI	ACTGGG	1 cut(s)	348
BpiI	GAAGAC	3 cut(s)	134, 228, 483
BpmI	CTGGAG	2 cut(s)	555, 630
Bpu1102I	GCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	12
Bse1I	ACTGG	2 cut(s)	271, 343
Bse3DI	GCAATG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	460
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	271, 343
BseSI	GKGCMC	1 cut(s)	201
BseYI	CCCAGC	2 cut(s)	82, 203
BsgI	GTGCAG	1 cut(s)	504
Bsh1236I	CGCG	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	267
BsiHKAI	GWGCWC	3 cut(s)	50, 278, 365
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	10
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	5 cut(s)	50, 57, 201, 278, 365
Bsp143I	GATC	4 cut(s)	333, 350, 387, 577
Bsp1720I	GCTNAGC	1 cut(s)	44
BspACI	CCGC	4 cut(s)	102, 105, 108, 397
BspCNI	CTCAG	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	269
BspOI	GCTAGC	1 cut(s)	555
BspPI	GGATC	4 cut(s)	341, 358, 395, 585
BspQI	GCTCTTC	1 cut(s)	353
BspT104I	TTCGAA	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	271, 343
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	460
BssMI	GATC	4 cut(s)	333, 350, 387, 577
BssT1I	CCWWGG	1 cut(s)	460
Bst4CI	ACNGT	3 cut(s)	184, 367, 482
Bst6I	CTCTTC	1 cut(s)	353
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	6 cut(s)	10, 39, 201, 411, 553, 606
BstDEI	CTNAG	2 cut(s)	44, 344
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	4 cut(s)	336, 353, 390, 580
BstMBI	GATC	4 cut(s)	333, 350, 387, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstSLI	GKGCMC	1 cut(s)	201
BstUI	CGCG	1 cut(s)	102
BstV2I	GAAGAC	3 cut(s)	134, 228, 483
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	4 cut(s)	269, 278, 336, 363
Cac8I	GCNNGC	6 cut(s)	10, 39, 201, 411, 553, 606
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	1 cut(s)	443
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	44, 344
DpnI	GATC	4 cut(s)	335, 352, 389, 579
DpnII	GATC	4 cut(s)	333, 350, 387, 577
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	1 cut(s)	446
FaiI	YATR	7 cut(s)	305, 329, 331, 417, 444, 494, 570
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	1 cut(s)	442
Fnu4HI	GCNGC	2 cut(s)	103, 106
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	103, 106
FspBI	CTAG	2 cut(s)	422, 552
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	2 cut(s)	103, 106
GsaI	CCCAGC	2 cut(s)	86, 207
GsuI	CTGGAG	2 cut(s)	555, 630
HapII	CCGG	1 cut(s)	13
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	446
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	3 cut(s)	209, 451, 537
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	4 cut(s)	177, 422, 455, 581
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	67, 70
HpyAV	CCTTC	2 cut(s)	130, 567
HpyCH4III	ACNGT	3 cut(s)	184, 367, 482
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	19, 485, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	2 cut(s)	44, 344
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	446
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	4 cut(s)	333, 350, 387, 577
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	225
LweI	GCATC	3 cut(s)	35, 520, 574
MaeI	CTAG	2 cut(s)	422, 552
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	4 cut(s)	335, 352, 389, 579
MboI	GATC	4 cut(s)	333, 350, 387, 577
MboII	GAAGA	8 cut(s)	21, 139, 145, 228, 295, 302, 370, 488
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	5 cut(s)	50, 57, 201, 278, 365
MluCI	AATT	2 cut(s)	187, 247
MlyI	GAGTC	1 cut(s)	546
MnlI	CCTC	5 cut(s)	43, 163, 492, 502, 616
MseI	TTAA	1 cut(s)	468
MspI	CCGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	10
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	593
NdeII	GATC	4 cut(s)	333, 350, 387, 577
NheI	GCTAGC	1 cut(s)	551
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	455
NspV	TTCGAA	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	209, 451
PflFI	GACNNNGTC	1 cut(s)	434
PkrI	GCNGC	2 cut(s)	104, 107
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
PspFI	CCCAGC	2 cut(s)	82, 203
PspN4I	GGNNCC	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	2 cut(s)	103, 106
Sau3AI	GATC	4 cut(s)	333, 350, 387, 577
SchI	GAGTC	1 cut(s)	546
SduI	GDGCHC	5 cut(s)	50, 57, 201, 278, 365
SfaNI	GCATC	3 cut(s)	35, 520, 574
SfuI	TTCGAA	1 cut(s)	77
Sse9I	AATT	2 cut(s)	187, 247
SsiI	CCGC	4 cut(s)	102, 105, 108, 397
SspMI	CTAG	2 cut(s)	422, 552
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	3 cut(s)	184, 367, 482
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	5 cut(s)	57, 77, 176, 239, 251
TasI	AATT	2 cut(s)	187, 247
TauI	GCSGC	2 cut(s)	105, 108
TfiI	GAWTC	2 cut(s)	209, 451
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	4 cut(s)	269, 278, 343, 370
TseFI	GTSAC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	4 cut(s)	269, 278, 343, 370
Tth111I	GACNNNGTC	1 cut(s)	434
XapI	RAATTY	2 cut(s)	187, 247
XbaI	TCTAGA	1 cut(s)	421
XspI	CTAG	2 cut(s)	422, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.